RNA–Protein interactions for RNA: ENST00000598309.1

USHBP1-208, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-208ENST00000598309 CKS1BP61024 79 aa10.34□□□□□ -0.75
USHBP1-208ENST00000598309 PMVKQ15126 192 aa10.34□□□□□ -0.75
USHBP1-208ENST00000598309 LINC00469Q8N7U9 141 aa10.34□□□□□ -0.75
USHBP1-208ENST00000598309 CST9LQ9H4G1 147 aa10.34□□□□□ -0.75
USHBP1-208ENST00000598309 TOMM7Q9P0U1 55 aa10.34□□□□□ -0.75
USHBP1-208ENST00000598309 GAGE2EQ4V326 116 aa10.33□□□□□ -0.76
USHBP1-208ENST00000598309 C6orf226Q5I0X4 101 aa10.33□□□□□ -0.76
USHBP1-208ENST00000598309 GAGE2DQ9UEU5 116 aa10.33□□□□□ -0.76
USHBP1-208ENST00000598309 LINC00614P0C842 121 aa10.32□□□□□ -0.76
USHBP1-208ENST00000598309 CXCL5P42830 114 aa10.32□□□□□ -0.76
USHBP1-208ENST00000598309 A0A096LNJ9 63 aa10.31□□□□□ -0.76
USHBP1-208ENST00000598309 SMIM1B2RUZ4 78 aa10.31□□□□□ -0.76
USHBP1-208ENST00000598309 PDZD11Q5EBL8 140 aa10.31□□□□□ -0.76
USHBP1-208ENST00000598309 SPINK6Q6UWN8 80 aa10.31□□□□□ -0.76
USHBP1-208ENST00000598309 PHF5AQ7RTV0 110 aaKnown RBP10.31□□□□□ -0.76
USHBP1-208ENST00000598309 URB1-AS1Q96HZ7 61 aa10.31□□□□□ -0.76
USHBP1-208ENST00000598309 YPEL4Q96NS1 127 aa10.31□□□□□ -0.76
USHBP1-208ENST00000598309 F8VRH5 84 aa10.3□□□□□ -0.76
USHBP1-208ENST00000598309 HBDP02042 147 aa10.3□□□□□ -0.76
USHBP1-208ENST00000598309 MT1HL1P0DM35 61 aa10.3□□□□□ -0.76
USHBP1-208ENST00000598309 RAB5BP61020 215 aa10.3□□□□□ -0.76
USHBP1-208ENST00000598309 FAM168BA1KXE4 195 aa10.29□□□□□ -0.76
USHBP1-208ENST00000598309 SRSF9Q13242 221 aaKnown RBP eCLIP10.29□□□□□ -0.76
USHBP1-208ENST00000598309 SERTAD4-AS1Q5TG53 156 aa10.29□□□□□ -0.76
USHBP1-208ENST00000598309 PSORS1C2Q9UIG4 136 aa10.29□□□□□ -0.76
USHBP1-208ENST00000598309 FAM19A5Q7Z5A7 132 aaPredicted RBP10.28□□□□□ -0.76
USHBP1-208ENST00000598309 H3BRM9 83 aa10.27□□□□□ -0.77
USHBP1-208ENST00000598309 IGLC3P0DOY3 106 aa10.27□□□□□ -0.77
USHBP1-208ENST00000598309 C9orf129Q5T035 196 aaKnown RBP10.27□□□□□ -0.77
USHBP1-208ENST00000598309 COX7B2Q8TF08 81 aa10.27□□□□□ -0.77
USHBP1-208ENST00000598309 ATP5LO75964 103 aa10.26□□□□□ -0.77
USHBP1-208ENST00000598309 REG3GQ6UW15 175 aa10.26□□□□□ -0.77
USHBP1-208ENST00000598309 KRTAP7-1Q8IUC3 87 aa10.26□□□□□ -0.77
USHBP1-208ENST00000598309 M0QXV9 152 aa10.25□□□□□ -0.77
USHBP1-208ENST00000598309 LINC01600Q96MT4 127 aa10.25□□□□□ -0.77
USHBP1-208ENST00000598309 SPINK8P0C7L1 97 aa10.24□□□□□ -0.77
USHBP1-208ENST00000598309 ODF1Q14990 250 aa10.24□□□□□ -0.77
USHBP1-208ENST00000598309 PMCHL1Q16048 86 aa10.24□□□□□ -0.77
USHBP1-208ENST00000598309 C1orf137Q5JT78 98 aa10.24□□□□□ -0.77
USHBP1-208ENST00000598309 NDUFA6P56556 154 aa10.23□□□□□ -0.77
USHBP1-208ENST00000598309 CBLN2Q8IUK8 224 aa10.23□□□□□ -0.77
USHBP1-208ENST00000598309 CHCHD1Q96BP2 118 aaKnown RBP10.23□□□□□ -0.77
USHBP1-208ENST00000598309 IGLV5-39A0A0G2JS06 123 aa10.21□□□□□ -0.77
USHBP1-208ENST00000598309 ZNF22P17026 224 aaPredicted RBP10.21□□□□□ -0.77
USHBP1-208ENST00000598309 KRTAP11-1Q8IUC1 163 aa10.21□□□□□ -0.77
USHBP1-208ENST00000598309 XAGE1AQ9HD64 81 aa10.21□□□□□ -0.77
USHBP1-208ENST00000598309 IGLV7-43P04211 117 aa10.2□□□□□ -0.78
USHBP1-208ENST00000598309 UBE2BP63146 152 aa10.2□□□□□ -0.78
USHBP1-208ENST00000598309 BAGE3Q86Y29 109 aa10.19□□□□□ -0.78
USHBP1-208ENST00000598309 TP73-AS1Q9UF72 201 aa10.18□□□□□ -0.78
USHBP1-208ENST00000598309 C11orf86A6NJI1 115 aa10.17□□□□□ -0.78
USHBP1-208ENST00000598309 LBHQ53QV2 105 aaPredicted RBP10.17□□□□□ -0.78
USHBP1-208ENST00000598309 SLC7A5P1Q8MH63 180 aa10.17□□□□□ -0.78
USHBP1-208ENST00000598309 DIRC1Q969H9 104 aa10.17□□□□□ -0.78
USHBP1-208ENST00000598309 C22orf24Q9Y442 160 aa10.17□□□□□ -0.78
USHBP1-208ENST00000598309 TRAV12-1A0A0B4J245 112 aa10.16□□□□□ -0.78
USHBP1-208ENST00000598309 IFI27L1Q96BM0 104 aa10.16□□□□□ -0.78
USHBP1-208ENST00000598309 PLA2G2DQ9UNK4 145 aa10.16□□□□□ -0.78
USHBP1-208ENST00000598309 CHTOPQ9Y3Y2 248 aaKnown RBP10.16□□□□□ -0.78
USHBP1-208ENST00000598309 HSBP1O75506 76 aa10.15□□□□□ -0.78
USHBP1-208ENST00000598309 KRTAP10-8P60410 259 aa10.15□□□□□ -0.78
USHBP1-208ENST00000598309 SFTA2Q6UW10 78 aa10.15□□□□□ -0.78
USHBP1-208ENST00000598309 TNXBP22105 4242 aa10.14□□□□□ -0.79
USHBP1-208ENST00000598309 TRGC2P03986 189 aa10.14□□□□□ -0.79
USHBP1-208ENST00000598309 TMEM170BQ5T4T1 132 aa10.14□□□□□ -0.79
USHBP1-208ENST00000598309 MRPL55Q7Z7F7 128 aaKnown RBP10.14□□□□□ -0.79
USHBP1-208ENST00000598309 HMCN2Q8NDA2 5059 aa10.13□□□□□ -0.79
USHBP1-208ENST00000598309 H0Y9J4 135 aa10.13□□□□□ -0.79
USHBP1-208ENST00000598309 NUPR1O60356 82 aa10.13□□□□□ -0.79
USHBP1-208ENST00000598309 IGLV5-37A0A075B6J1 123 aa10.12□□□□□ -0.79
USHBP1-208ENST00000598309 COX17Q14061 63 aa10.11□□□□□ -0.79
USHBP1-208ENST00000598309 ERG28Q9UKR5 140 aa10.11□□□□□ -0.79
USHBP1-208ENST00000598309 FAM19A2Q8N3H0 131 aa10.1□□□□□ -0.79
USHBP1-208ENST00000598309 TMEM223A0PJW6 202 aa10.09□□□□□ -0.79
USHBP1-208ENST00000598309 COLCA2A8K830 154 aa10.09□□□□□ -0.79
USHBP1-208ENST00000598309 PFN2P35080 140 aa10.09□□□□□ -0.79
USHBP1-208ENST00000598309 ZNF625Q96I27 306 aaPredicted RBP10.09□□□□□ -0.79
USHBP1-208ENST00000598309 SERF1AO75920 110 aa10.08□□□□□ -0.8
USHBP1-208ENST00000598309 LINC00310P59036 64 aa10.08□□□□□ -0.8
USHBP1-208ENST00000598309 NKAPP1Q8N9T2 125 aa10.08□□□□□ -0.8
USHBP1-208ENST00000598309 ZNF861PO60384 105 aa10.07□□□□□ -0.8
USHBP1-208ENST00000598309 LINC00167Q96N53 147 aa10.07□□□□□ -0.8
USHBP1-208ENST00000598309 SND1-IT1Q9HBX3 110 aa10.07□□□□□ -0.8
USHBP1-208ENST00000598309 LEPROTL1O95214 131 aa10.06□□□□□ -0.8
USHBP1-208ENST00000598309 BCE1O60756 84 aa10.05□□□□□ -0.8
USHBP1-208ENST00000598309 KRTAP1-4P0C5Y4 121 aa10.05□□□□□ -0.8
USHBP1-208ENST00000598309 IGLV1-50A0A075B6I6 118 aa10.04□□□□□ -0.8
USHBP1-208ENST00000598309 RPL37AP8A6NKH3 93 aa10.04□□□□□ -0.8
USHBP1-208ENST00000598309 HSPB8Q9UJY1 196 aa10.04□□□□□ -0.8
USHBP1-208ENST00000598309 GAGE10A6NGK3 116 aa10.03□□□□□ -0.8
USHBP1-208ENST00000598309 VPREB1P12018 145 aa10.03□□□□□ -0.8
USHBP1-208ENST00000598309 RPL28P46779 137 aaKnown RBP10.03□□□□□ -0.8
USHBP1-208ENST00000598309 RPL24P83731 157 aaKnown RBP10.03□□□□□ -0.8
USHBP1-208ENST00000598309 PRR26Q8N8Z3 221 aa10.02□□□□□ -0.81
USHBP1-208ENST00000598309 H0Y8G0 127 aa10.01□□□□□ -0.81
USHBP1-208ENST00000598309 PLNP26678 52 aa10.01□□□□□ -0.81
USHBP1-208ENST00000598309 LINC00158P58513 81 aa10□□□□□ -0.81
USHBP1-208ENST00000598309 HERV-K104P63124 156 aa10□□□□□ -0.81
USHBP1-208ENST00000598309 RPL13AP40429 203 aaKnown RBP9.99□□□□□ -0.81
USHBP1-208ENST00000598309 LINC00587B1AMM8 73 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms