RNA–Protein interactions for RNA: ENST00000596726.3

PNKP-209, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 637 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-209ENST00000596726 RAB5BP61020 215 aa13.18□□□□□ -0.3
PNKP-209ENST00000596726 Q8IZM0 81 aa13.18□□□□□ -0.3
PNKP-209ENST00000596726 HERC1Q15751 4861 aa13.17□□□□□ -0.3
PNKP-209ENST00000596726 HBDP02042 147 aa13.17□□□□□ -0.3
PNKP-209ENST00000596726 Q6ZRP5 223 aa13.17□□□□□ -0.3
PNKP-209ENST00000596726 PRSS2P07478 247 aa13.16□□□□□ -0.3
PNKP-209ENST00000596726 C9orf116Q5BN46 136 aaPredicted RBP13.16□□□□□ -0.3
PNKP-209ENST00000596726 PDZD11Q5EBL8 140 aa13.16□□□□□ -0.3
PNKP-209ENST00000596726 LINC00469Q8N7U9 141 aa13.16□□□□□ -0.3
PNKP-209ENST00000596726 PACRGQ96M98 296 aaPredicted RBP13.16□□□□□ -0.3
PNKP-209ENST00000596726 TOMM7Q9P0U1 55 aa13.16□□□□□ -0.3
PNKP-209ENST00000596726 PMCHL1Q16048 86 aa13.15□□□□□ -0.3
PNKP-209ENST00000596726 C6orf226Q5I0X4 101 aa13.15□□□□□ -0.3
PNKP-209ENST00000596726 SMIM1B2RUZ4 78 aa13.14□□□□□ -0.31
PNKP-209ENST00000596726 CKS1BP61024 79 aa13.13□□□□□ -0.31
PNKP-209ENST00000596726 PRR3P79522 188 aaKnown RBP13.13□□□□□ -0.31
PNKP-209ENST00000596726 NDUFC2-KCTD14E9PQ53 114 aa13.12□□□□□ -0.31
PNKP-209ENST00000596726 OXTP01178 125 aa13.12□□□□□ -0.31
PNKP-209ENST00000596726 J3QL48 77 aa13.11□□□□□ -0.31
PNKP-209ENST00000596726 ATP5LO75964 103 aa13.11□□□□□ -0.31
PNKP-209ENST00000596726 IGLC3P0DOY3 106 aa13.11□□□□□ -0.31
PNKP-209ENST00000596726 CHCHD1Q96BP2 118 aaKnown RBP13.11□□□□□ -0.31
PNKP-209ENST00000596726 GAGE2EQ4V326 116 aa13.1□□□□□ -0.31
PNKP-209ENST00000596726 GAGE2DQ9UEU5 116 aa13.1□□□□□ -0.31
PNKP-209ENST00000596726 TRGC2P03986 189 aa13.09□□□□□ -0.31
PNKP-209ENST00000596726 CXCL5P42830 114 aa13.09□□□□□ -0.31
PNKP-209ENST00000596726 NDUFA6P56556 154 aa13.09□□□□□ -0.31
PNKP-209ENST00000596726 FAM168BA1KXE4 195 aa13.08□□□□□ -0.32
PNKP-209ENST00000596726 F8VRH5 84 aa13.08□□□□□ -0.32
PNKP-209ENST00000596726 SCO1O75880 301 aa13.07□□□□□ -0.32
PNKP-209ENST00000596726 SPINK8P0C7L1 97 aa13.07□□□□□ -0.32
PNKP-209ENST00000596726 PHF5AQ7RTV0 110 aaKnown RBP13.07□□□□□ -0.32
PNKP-209ENST00000596726 COX7B2Q8TF08 81 aa13.07□□□□□ -0.32
PNKP-209ENST00000596726 COLCA2A8K830 154 aa13.06□□□□□ -0.32
PNKP-209ENST00000596726 H3BRM9 83 aa13.06□□□□□ -0.32
PNKP-209ENST00000596726 KRTAP7-1Q8IUC3 87 aa13.06□□□□□ -0.32
PNKP-209ENST00000596726 ZNF22P17026 224 aaPredicted RBP13.05□□□□□ -0.32
PNKP-209ENST00000596726 C9orf129Q5T035 196 aaKnown RBP13.05□□□□□ -0.32
PNKP-209ENST00000596726 BAGE3Q86Y29 109 aa13.05□□□□□ -0.32
PNKP-209ENST00000596726 IGLV5-39A0A0G2JS06 123 aa13.03□□□□□ -0.32
PNKP-209ENST00000596726 FAM19A5Q7Z5A7 132 aaPredicted RBP13.02□□□□□ -0.33
PNKP-209ENST00000596726 IFI27L1Q96BM0 104 aa13.02□□□□□ -0.33
PNKP-209ENST00000596726 PSORS1C2Q9UIG4 136 aa13.02□□□□□ -0.33
PNKP-209ENST00000596726 C11orf86A6NJI1 115 aa13.01□□□□□ -0.33
PNKP-209ENST00000596726 HSBP1O75506 76 aa13.01□□□□□ -0.33
PNKP-209ENST00000596726 SRSF9Q13242 221 aaKnown RBP eCLIP13.01□□□□□ -0.33
PNKP-209ENST00000596726 TRAV12-1A0A0B4J245 112 aa13□□□□□ -0.33
PNKP-209ENST00000596726 LINC00310P59036 64 aa13□□□□□ -0.33
PNKP-209ENST00000596726 SPINK6Q6UWN8 80 aa12.99□□□□□ -0.33
PNKP-209ENST00000596726 FAM19A2Q8N3H0 131 aa12.99□□□□□ -0.33
PNKP-209ENST00000596726 CHTOPQ9Y3Y2 248 aaKnown RBP12.99□□□□□ -0.33
PNKP-209ENST00000596726 KRTAP11-1Q8IUC1 163 aa12.98□□□□□ -0.33
PNKP-209ENST00000596726 M0QXV9 152 aa12.97□□□□□ -0.33
PNKP-209ENST00000596726 XAGE1AQ9HD64 81 aa12.97□□□□□ -0.33
PNKP-209ENST00000596726 SERF1AO75920 110 aa12.96□□□□□ -0.33
PNKP-209ENST00000596726 MT1HL1P0DM35 61 aa12.96□□□□□ -0.33
PNKP-209ENST00000596726 TMEM170BQ5T4T1 132 aa12.96□□□□□ -0.33
PNKP-209ENST00000596726 SERTAD4-AS1Q5TG53 156 aa12.96□□□□□ -0.33
PNKP-209ENST00000596726 ODF1Q14990 250 aa12.95□□□□□ -0.34
PNKP-209ENST00000596726 C1orf137Q5JT78 98 aa12.94□□□□□ -0.34
PNKP-209ENST00000596726 NUPR1O60356 82 aa12.93□□□□□ -0.34
PNKP-209ENST00000596726 C22orf24Q9Y442 160 aa12.92□□□□□ -0.34
PNKP-209ENST00000596726 TMEM223A0PJW6 202 aa12.91□□□□□ -0.34
PNKP-209ENST00000596726 LEPROTL1O95214 131 aa12.9□□□□□ -0.34
PNKP-209ENST00000596726 LINC01600Q96MT4 127 aa12.9□□□□□ -0.34
PNKP-209ENST00000596726 PLA2G2DQ9UNK4 145 aa12.9□□□□□ -0.34
PNKP-209ENST00000596726 TNXBP22105 4242 aa12.89□□□□□ -0.35
PNKP-209ENST00000596726 IGLV7-43P04211 117 aa12.89□□□□□ -0.35
PNKP-209ENST00000596726 UBE2BP63146 152 aa12.89□□□□□ -0.35
PNKP-209ENST00000596726 TP73-AS1Q9UF72 201 aa12.89□□□□□ -0.35
PNKP-209ENST00000596726 SFTA2Q6UW10 78 aa12.88□□□□□ -0.35
PNKP-209ENST00000596726 REG3GQ6UW15 175 aa12.88□□□□□ -0.35
PNKP-209ENST00000596726 ZNF625Q96I27 306 aaPredicted RBP12.88□□□□□ -0.35
PNKP-209ENST00000596726 LBHQ53QV2 105 aaPredicted RBP12.87□□□□□ -0.35
PNKP-209ENST00000596726 ERG28Q9UKR5 140 aa12.87□□□□□ -0.35
PNKP-209ENST00000596726 PFN2P35080 140 aa12.86□□□□□ -0.35
PNKP-209ENST00000596726 COX17Q14061 63 aa12.86□□□□□ -0.35
PNKP-209ENST00000596726 IGLV5-37A0A075B6J1 123 aa12.85□□□□□ -0.35
PNKP-209ENST00000596726 MRPL55Q7Z7F7 128 aaKnown RBP12.85□□□□□ -0.35
PNKP-209ENST00000596726 HSPB8Q9UJY1 196 aa12.85□□□□□ -0.35
PNKP-209ENST00000596726 HIST1H2BKO60814 126 aa12.84□□□□□ -0.35
PNKP-209ENST00000596726 HIST1H2BJP06899 126 aa12.84□□□□□ -0.35
PNKP-209ENST00000596726 FABP4P15090 132 aa12.84□□□□□ -0.35
PNKP-209ENST00000596726 HIST1H2BOP23527 126 aa12.84□□□□□ -0.35
PNKP-209ENST00000596726 HIST1H2BBP33778 126 aa12.84□□□□□ -0.35
PNKP-209ENST00000596726 HIST1H2BDP58876 126 aa12.84□□□□□ -0.35
PNKP-209ENST00000596726 HIST1H2BCP62807 126 aa12.84□□□□□ -0.35
PNKP-209ENST00000596726 HIST2H2BEQ16778 126 aa12.84□□□□□ -0.35
PNKP-209ENST00000596726 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.84□□□□□ -0.35
PNKP-209ENST00000596726 HIST1H2BHQ93079 126 aa12.84□□□□□ -0.35
PNKP-209ENST00000596726 HIST1H2BNQ99877 126 aa12.84□□□□□ -0.35
PNKP-209ENST00000596726 HIST1H2BMQ99879 126 aa12.84□□□□□ -0.35
PNKP-209ENST00000596726 TMA7Q9Y2S6 64 aaKnown RBP12.84□□□□□ -0.35
PNKP-209ENST00000596726 H0Y8G0 127 aa12.83□□□□□ -0.36
PNKP-209ENST00000596726 SND1-IT1Q9HBX3 110 aa12.82□□□□□ -0.36
PNKP-209ENST00000596726 KRTAP10-8P60410 259 aa12.81□□□□□ -0.36
PNKP-209ENST00000596726 DIRC1Q969H9 104 aa12.81□□□□□ -0.36
PNKP-209ENST00000596726 LINC00167Q96N53 147 aa12.81□□□□□ -0.36
PNKP-209ENST00000596726 H0Y9J4 135 aa12.78□□□□□ -0.36
PNKP-209ENST00000596726 PLNP26678 52 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms