RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 PMVKQ15126 192 aa10.11□□□□□ -0.79
TRIM28-206ENST00000595974 Q6ZRP5 223 aa10.11□□□□□ -0.79
TRIM28-206ENST00000595974 LINC00469Q8N7U9 141 aa10.11□□□□□ -0.79
TRIM28-206ENST00000595974 URB1-AS1Q96HZ7 61 aa10.11□□□□□ -0.79
TRIM28-206ENST00000595974 CST9LQ9H4G1 147 aa10.11□□□□□ -0.79
TRIM28-206ENST00000595974 IGLV5-45A0A087WSX0 123 aa10.1□□□□□ -0.79
TRIM28-206ENST00000595974 A0A096LNJ9 63 aa10.1□□□□□ -0.79
TRIM28-206ENST00000595974 HBDP02042 147 aa10.1□□□□□ -0.79
TRIM28-206ENST00000595974 RAB5BP61020 215 aa10.1□□□□□ -0.79
TRIM28-206ENST00000595974 CKS1BP61024 79 aa10.1□□□□□ -0.79
TRIM28-206ENST00000595974 C6orf226Q5I0X4 101 aa10.1□□□□□ -0.79
TRIM28-206ENST00000595974 NDUFC2-KCTD14E9PQ53 114 aa10.09□□□□□ -0.79
TRIM28-206ENST00000595974 SMIM1B2RUZ4 78 aa10.08□□□□□ -0.8
TRIM28-206ENST00000595974 CXCL5P42830 114 aa10.08□□□□□ -0.8
TRIM28-206ENST00000595974 GAGE2EQ4V326 116 aa10.07□□□□□ -0.8
TRIM28-206ENST00000595974 PDZD11Q5EBL8 140 aa10.07□□□□□ -0.8
TRIM28-206ENST00000595974 CBLN2Q8IUK8 224 aa10.07□□□□□ -0.8
TRIM28-206ENST00000595974 GAGE2DQ9UEU5 116 aa10.07□□□□□ -0.8
TRIM28-206ENST00000595974 F8VRH5 84 aa10.06□□□□□ -0.8
TRIM28-206ENST00000595974 ATP5LO75964 103 aa10.05□□□□□ -0.8
TRIM28-206ENST00000595974 PMCHL1Q16048 86 aa10.05□□□□□ -0.8
TRIM28-206ENST00000595974 FAM168BA1KXE4 195 aa10.04□□□□□ -0.8
TRIM28-206ENST00000595974 H3BRM9 83 aa10.04□□□□□ -0.8
TRIM28-206ENST00000595974 IGLC3P0DOY3 106 aa10.04□□□□□ -0.8
TRIM28-206ENST00000595974 PHF5AQ7RTV0 110 aaKnown RBP10.04□□□□□ -0.8
TRIM28-206ENST00000595974 COX7B2Q8TF08 81 aa10.04□□□□□ -0.8
TRIM28-206ENST00000595974 NDUFA6P56556 154 aa10.03□□□□□ -0.8
TRIM28-206ENST00000595974 FAM19A5Q7Z5A7 132 aaPredicted RBP10.03□□□□□ -0.8
TRIM28-206ENST00000595974 SLC7A5P1Q8MH63 180 aa10.03□□□□□ -0.8
TRIM28-206ENST00000595974 CHCHD1Q96BP2 118 aaKnown RBP10.03□□□□□ -0.8
TRIM28-206ENST00000595974 SPINK8P0C7L1 97 aa10.02□□□□□ -0.81
TRIM28-206ENST00000595974 C9orf129Q5T035 196 aaKnown RBP10.02□□□□□ -0.81
TRIM28-206ENST00000595974 SPINK6Q6UWN8 80 aa10.02□□□□□ -0.81
TRIM28-206ENST00000595974 PSORS1C2Q9UIG4 136 aa10.02□□□□□ -0.81
TRIM28-206ENST00000595974 M0QXV9 152 aa10.01□□□□□ -0.81
TRIM28-206ENST00000595974 ZNF22P17026 224 aaPredicted RBP10□□□□□ -0.81
TRIM28-206ENST00000595974 KRTAP7-1Q8IUC3 87 aa9.99□□□□□ -0.81
TRIM28-206ENST00000595974 IGLV5-39A0A0G2JS06 123 aa9.98□□□□□ -0.81
TRIM28-206ENST00000595974 MT1HL1P0DM35 61 aa9.98□□□□□ -0.81
TRIM28-206ENST00000595974 SRSF9Q13242 221 aaKnown RBP eCLIP9.98□□□□□ -0.81
TRIM28-206ENST00000595974 BAGE3Q86Y29 109 aa9.98□□□□□ -0.81
TRIM28-206ENST00000595974 TRGC2P03986 189 aa9.97□□□□□ -0.81
TRIM28-206ENST00000595974 C1orf137Q5JT78 98 aa9.97□□□□□ -0.81
TRIM28-206ENST00000595974 REG3GQ6UW15 175 aa9.97□□□□□ -0.81
TRIM28-206ENST00000595974 XAGE1AQ9HD64 81 aa9.97□□□□□ -0.81
TRIM28-206ENST00000595974 C11orf86A6NJI1 115 aa9.96□□□□□ -0.82
TRIM28-206ENST00000595974 HSBP1O75506 76 aa9.96□□□□□ -0.82
TRIM28-206ENST00000595974 UBE2BP63146 152 aa9.96□□□□□ -0.82
TRIM28-206ENST00000595974 ODF1Q14990 250 aa9.96□□□□□ -0.82
TRIM28-206ENST00000595974 IFI27L1Q96BM0 104 aa9.96□□□□□ -0.82
TRIM28-206ENST00000595974 TRAV12-1A0A0B4J245 112 aa9.95□□□□□ -0.82
TRIM28-206ENST00000595974 SERTAD4-AS1Q5TG53 156 aa9.95□□□□□ -0.82
TRIM28-206ENST00000595974 LINC01600Q96MT4 127 aa9.95□□□□□ -0.82
TRIM28-206ENST00000595974 CHTOPQ9Y3Y2 248 aaKnown RBP9.95□□□□□ -0.82
TRIM28-206ENST00000595974 TMEM170BQ5T4T1 132 aa9.94□□□□□ -0.82
TRIM28-206ENST00000595974 KRTAP11-1Q8IUC1 163 aa9.94□□□□□ -0.82
TRIM28-206ENST00000595974 TNXBP22105 4242 aa9.93□□□□□ -0.82
TRIM28-206ENST00000595974 IGLV7-43P04211 117 aa9.93□□□□□ -0.82
TRIM28-206ENST00000595974 SFTA2Q6UW10 78 aa9.92□□□□□ -0.82
TRIM28-206ENST00000595974 TP73-AS1Q9UF72 201 aa9.92□□□□□ -0.82
TRIM28-206ENST00000595974 COLCA2A8K830 154 aa9.91□□□□□ -0.82
TRIM28-206ENST00000595974 LBHQ53QV2 105 aaPredicted RBP9.91□□□□□ -0.82
TRIM28-206ENST00000595974 FAM19A2Q8N3H0 131 aa9.91□□□□□ -0.82
TRIM28-206ENST00000595974 C22orf24Q9Y442 160 aa9.91□□□□□ -0.82
TRIM28-206ENST00000595974 SERF1AO75920 110 aa9.9□□□□□ -0.82
TRIM28-206ENST00000595974 PLA2G2DQ9UNK4 145 aa9.9□□□□□ -0.82
TRIM28-206ENST00000595974 LINC00310P59036 64 aa9.89□□□□□ -0.83
TRIM28-206ENST00000595974 MRPL55Q7Z7F7 128 aaKnown RBP9.89□□□□□ -0.83
TRIM28-206ENST00000595974 DIRC1Q969H9 104 aa9.89□□□□□ -0.83
TRIM28-206ENST00000595974 HMCN2Q8NDA2 5059 aa9.88□□□□□ -0.83
TRIM28-206ENST00000595974 LEPROTL1O95214 131 aa9.88□□□□□ -0.83
TRIM28-206ENST00000595974 COX17Q14061 63 aa9.88□□□□□ -0.83
TRIM28-206ENST00000595974 ERG28Q9UKR5 140 aa9.88□□□□□ -0.83
TRIM28-206ENST00000595974 IGLV5-37A0A075B6J1 123 aa9.87□□□□□ -0.83
TRIM28-206ENST00000595974 TMEM223A0PJW6 202 aa9.87□□□□□ -0.83
TRIM28-206ENST00000595974 NUPR1O60356 82 aa9.87□□□□□ -0.83
TRIM28-206ENST00000595974 PFN2P35080 140 aa9.87□□□□□ -0.83
TRIM28-206ENST00000595974 H0Y9J4 135 aa9.86□□□□□ -0.83
TRIM28-206ENST00000595974 ZNF625Q96I27 306 aaPredicted RBP9.86□□□□□ -0.83
TRIM28-206ENST00000595974 HSPB8Q9UJY1 196 aa9.85□□□□□ -0.83
TRIM28-206ENST00000595974 KRTAP10-8P60410 259 aa9.84□□□□□ -0.83
TRIM28-206ENST00000595974 NKAPP1Q8N9T2 125 aa9.84□□□□□ -0.83
TRIM28-206ENST00000595974 H0Y8G0 127 aa9.83□□□□□ -0.84
TRIM28-206ENST00000595974 LINC00167Q96N53 147 aa9.83□□□□□ -0.84
TRIM28-206ENST00000595974 SND1-IT1Q9HBX3 110 aa9.83□□□□□ -0.84
TRIM28-206ENST00000595974 SCO1O75880 301 aa9.82□□□□□ -0.84
TRIM28-206ENST00000595974 PLNP26678 52 aa9.81□□□□□ -0.84
TRIM28-206ENST00000595974 GAGE10A6NGK3 116 aa9.8□□□□□ -0.84
TRIM28-206ENST00000595974 ZNF861PO60384 105 aa9.8□□□□□ -0.84
TRIM28-206ENST00000595974 BCE1O60756 84 aa9.8□□□□□ -0.84
TRIM28-206ENST00000595974 FABP4P15090 132 aa9.8□□□□□ -0.84
TRIM28-206ENST00000595974 RPL37AP8A6NKH3 93 aa9.79□□□□□ -0.84
TRIM28-206ENST00000595974 VPREB1P12018 145 aa9.79□□□□□ -0.84
TRIM28-206ENST00000595974 HERV-K104P63124 156 aa9.79□□□□□ -0.84
TRIM28-206ENST00000595974 RPL24P83731 157 aaKnown RBP9.79□□□□□ -0.84
TRIM28-206ENST00000595974 HIST1H2BKO60814 126 aa9.78□□□□□ -0.84
TRIM28-206ENST00000595974 HIST1H2BJP06899 126 aa9.78□□□□□ -0.84
TRIM28-206ENST00000595974 HIST1H2BOP23527 126 aa9.78□□□□□ -0.84
TRIM28-206ENST00000595974 HIST1H2BBP33778 126 aa9.78□□□□□ -0.84
TRIM28-206ENST00000595974 LINC00158P58513 81 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms