RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 C6orf223Q8N319 242 aa9.7□□□□□ -0.86
SHKBP1-211ENST00000595945 HERV-K104P63124 156 aa9.69□□□□□ -0.86
SHKBP1-211ENST00000595945 WFDC2Q14508 124 aa9.69□□□□□ -0.86
SHKBP1-211ENST00000595945 SFTA2Q6UW10 78 aa9.69□□□□□ -0.86
SHKBP1-211ENST00000595945 C2orf82Q6UX34 121 aa9.69□□□□□ -0.86
SHKBP1-211ENST00000595945 C2orf48Q96LS8 159 aa9.69□□□□□ -0.86
SHKBP1-211ENST00000595945 F8WDY8 70 aa9.68□□□□□ -0.86
SHKBP1-211ENST00000595945 HNRNPA3P51991 378 aaKnown RBP9.68□□□□□ -0.86
SHKBP1-211ENST00000595945 LINC00526Q96FQ7 95 aa9.68□□□□□ -0.86
SHKBP1-211ENST00000595945 DNAH17Q9UFH2 4485 aa9.67□□□□□ -0.86
SHKBP1-211ENST00000595945 LCE6AA0A183 80 aa9.67□□□□□ -0.86
SHKBP1-211ENST00000595945 LRCOL1A6NCL2 159 aa9.67□□□□□ -0.86
SHKBP1-211ENST00000595945 ZNF561-AS1K7EIQ3 104 aa9.67□□□□□ -0.86
SHKBP1-211ENST00000595945 PSCAO43653 123 aa9.67□□□□□ -0.86
SHKBP1-211ENST00000595945 TIMM17BO60830 172 aa9.67□□□□□ -0.86
SHKBP1-211ENST00000595945 CKS1BP61024 79 aa9.67□□□□□ -0.86
SHKBP1-211ENST00000595945 SCGB1D4Q6XE38 83 aa9.67□□□□□ -0.86
SHKBP1-211ENST00000595945 LITAFQ99732 161 aa9.67□□□□□ -0.86
SHKBP1-211ENST00000595945 C10orf25Q5T742 122 aa9.66□□□□□ -0.86
SHKBP1-211ENST00000595945 UNQ6190/PRO20217Q6UXQ8 127 aa9.66□□□□□ -0.86
SHKBP1-211ENST00000595945 PCP4L1A6NKN8 68 aa9.65□□□□□ -0.86
SHKBP1-211ENST00000595945 C1orf134Q5TEV5 83 aa9.65□□□□□ -0.86
SHKBP1-211ENST00000595945 SPANXB1Q9NS25 103 aaPredicted RBP9.65□□□□□ -0.86
SHKBP1-211ENST00000595945 HYDINQ4G0P3 5121 aa9.65□□□□□ -0.87
SHKBP1-211ENST00000595945 LECT2O14960 151 aa9.64□□□□□ -0.87
SHKBP1-211ENST00000595945 SLPIP03973 132 aa9.64□□□□□ -0.87
SHKBP1-211ENST00000595945 CAMK2N2Q96S95 79 aa9.64□□□□□ -0.87
SHKBP1-211ENST00000595945 C6orf48Q9UBA6 75 aa9.64□□□□□ -0.87
SHKBP1-211ENST00000595945 TRBV30A0A0K0K1B3 111 aa9.63□□□□□ -0.87
SHKBP1-211ENST00000595945 CTAG1AP78358 180 aa9.63□□□□□ -0.87
SHKBP1-211ENST00000595945 C14orf177Q52M58 125 aa9.63□□□□□ -0.87
SHKBP1-211ENST00000595945 ADAMTSL4-AS1Q5T5F5 129 aa9.63□□□□□ -0.87
SHKBP1-211ENST00000595945 Q6ZRU5 148 aa9.63□□□□□ -0.87
SHKBP1-211ENST00000595945 TMEM238C9JI98 176 aa9.62□□□□□ -0.87
SHKBP1-211ENST00000595945 SMIM13P0DJ93 91 aa9.62□□□□□ -0.87
SHKBP1-211ENST00000595945 SYCNQ0VAF6 134 aa9.62□□□□□ -0.87
SHKBP1-211ENST00000595945 TAL2Q16559 108 aa9.62□□□□□ -0.87
SHKBP1-211ENST00000595945 MEIG1Q5JSS6 88 aa9.62□□□□□ -0.87
SHKBP1-211ENST00000595945 SPANXDQ9BXN6 97 aa9.62□□□□□ -0.87
SHKBP1-211ENST00000595945 SPANXCQ9NY87 97 aa9.62□□□□□ -0.87
SHKBP1-211ENST00000595945 ERG28Q9UKR5 140 aa9.62□□□□□ -0.87
SHKBP1-211ENST00000595945 RYR2Q92736 4967 aa9.62□□□□□ -0.87
SHKBP1-211ENST00000595945 LINC00587B1AMM8 73 aa9.61□□□□□ -0.87
SHKBP1-211ENST00000595945 HSD52Q0P140 79 aa9.61□□□□□ -0.87
SHKBP1-211ENST00000595945 RNF151Q2KHN1 245 aa9.61□□□□□ -0.87
SHKBP1-211ENST00000595945 A0A087WTM6 91 aa9.6□□□□□ -0.87
SHKBP1-211ENST00000595945 CIRBPQ14011 172 aaKnown RBP9.6□□□□□ -0.87
SHKBP1-211ENST00000595945 COX17Q14061 63 aa9.6□□□□□ -0.87
SHKBP1-211ENST00000595945 C9orf116Q5BN46 136 aaPredicted RBP9.6□□□□□ -0.87
SHKBP1-211ENST00000595945 Q6ZVH6 145 aa9.6□□□□□ -0.87
SHKBP1-211ENST00000595945 RTL8CO15255 209 aa9.59□□□□□ -0.87
SHKBP1-211ENST00000595945 PTTG1IPP53801 180 aa9.59□□□□□ -0.87
SHKBP1-211ENST00000595945 CNBPP62633 177 aaKnown RBP9.59□□□□□ -0.87
SHKBP1-211ENST00000595945 CARD19Q96LW7 228 aa9.59□□□□□ -0.87
SHKBP1-211ENST00000595945 FRAS1Q86XX4 4008 aa9.59□□□□□ -0.87
SHKBP1-211ENST00000595945 A0A0U1RRA0 63 aa9.58□□□□□ -0.88
SHKBP1-211ENST00000595945 LINC00158P58513 81 aa9.58□□□□□ -0.88
SHKBP1-211ENST00000595945 SRSF9Q13242 221 aaKnown RBP eCLIP9.58□□□□□ -0.88
SHKBP1-211ENST00000595945 HIST1H4GQ99525 98 aa9.58□□□□□ -0.88
SHKBP1-211ENST00000595945 PFN2P35080 140 aa9.57□□□□□ -0.88
SHKBP1-211ENST00000595945 CEND1Q8N111 149 aa9.57□□□□□ -0.88
SHKBP1-211ENST00000595945 Q8N814 137 aa9.57□□□□□ -0.88
SHKBP1-211ENST00000595945 DAND5Q8N907 189 aa9.57□□□□□ -0.88
SHKBP1-211ENST00000595945 PPDPFQ9H3Y8 114 aa9.57□□□□□ -0.88
SHKBP1-211ENST00000595945 KMT2CQ8NEZ4 4911 aaKnown RBP9.56□□□□□ -0.88
SHKBP1-211ENST00000595945 TLX1NBP0CAT3 122 aa9.56□□□□□ -0.88
SHKBP1-211ENST00000595945 IFITM1P13164 125 aa9.56□□□□□ -0.88
SHKBP1-211ENST00000595945 BVES-AS1Q5T3Y7 98 aa9.56□□□□□ -0.88
SHKBP1-211ENST00000595945 MIR7-3HGQ8N6C7 128 aa9.56□□□□□ -0.88
SHKBP1-211ENST00000595945 LINC00308Q8TCZ7 52 aa9.56□□□□□ -0.88
SHKBP1-211ENST00000595945 DNAH11Q96DT5 4516 aa9.55□□□□□ -0.88
SHKBP1-211ENST00000595945 EIF4EBP3O60516 100 aaPredicted RBP9.55□□□□□ -0.88
SHKBP1-211ENST00000595945 SOSTDC1Q6X4U4 206 aa9.55□□□□□ -0.88
SHKBP1-211ENST00000595945 MUSTN1Q8IVN3 82 aa9.55□□□□□ -0.88
SHKBP1-211ENST00000595945 LOC107984156A0A0G2JMH3 177 aa9.54□□□□□ -0.88
SHKBP1-211ENST00000595945 M0R143 59 aa9.54□□□□□ -0.88
SHKBP1-211ENST00000595945 GCSHP23434 173 aa9.54□□□□□ -0.88
SHKBP1-211ENST00000595945 HINT1P49773 126 aaPredicted RBP9.54□□□□□ -0.88
SHKBP1-211ENST00000595945 FXYD2P54710 66 aa9.54□□□□□ -0.88
SHKBP1-211ENST00000595945 TNP2Q05952 138 aa9.54□□□□□ -0.88
SHKBP1-211ENST00000595945 ARL17AQ8IVW1 177 aa9.54□□□□□ -0.88
SHKBP1-211ENST00000595945 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.53□□□□□ -0.88
SHKBP1-211ENST00000595945 NDUFC2-KCTD14E9PQ53 114 aa9.53□□□□□ -0.88
SHKBP1-211ENST00000595945 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.52□□□□□ -0.89
SHKBP1-211ENST00000595945 SNHG12Q9BXW3 62 aa9.52□□□□□ -0.89
SHKBP1-211ENST00000595945 SND1-IT1Q9HBX3 110 aa9.52□□□□□ -0.89
SHKBP1-211ENST00000595945 HECTD4Q9Y4D8 3996 aa9.52□□□□□ -0.89
SHKBP1-211ENST00000595945 FAT2Q9NYQ8 4349 aa9.52□□□□□ -0.89
SHKBP1-211ENST00000595945 EREGO14944 169 aa9.51□□□□□ -0.89
SHKBP1-211ENST00000595945 NPC2P61916 151 aa9.51□□□□□ -0.89
SHKBP1-211ENST00000595945 C9orf163Q8N9P6 203 aa9.51□□□□□ -0.89
SHKBP1-211ENST00000595945 COPS9Q8WXC6 57 aa9.51□□□□□ -0.89
SHKBP1-211ENST00000595945 RPL24P83731 157 aaKnown RBP9.5□□□□□ -0.89
SHKBP1-211ENST00000595945 Q6ZRP5 223 aa9.5□□□□□ -0.89
SHKBP1-211ENST00000595945 LOC107984640A0A0U1RRK4 108 aa9.49□□□□□ -0.89
SHKBP1-211ENST00000595945 A4D1N5 150 aa9.49□□□□□ -0.89
SHKBP1-211ENST00000595945 A0A1B0GWB2 263 aa9.48□□□□□ -0.89
SHKBP1-211ENST00000595945 TMEM238LA0A1B0GVL6 79 aa9.47□□□□□ -0.89
SHKBP1-211ENST00000595945 A6NJY4 79 aa9.47□□□□□ -0.89
SHKBP1-211ENST00000595945 RPL18AQ02543 176 aaKnown RBP9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms