RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 TINCRA0A1B0GVN0 87 aa11.03□□□□□ -0.64
SHKBP1-204ENST00000594862 LINC00469Q8N7U9 141 aa11.03□□□□□ -0.64
SHKBP1-204ENST00000594862 PKHD1L1Q86WI1 4243 aa11.03□□□□□ -0.64
SHKBP1-204ENST00000594862 PMVKQ15126 192 aa11.02□□□□□ -0.65
SHKBP1-204ENST00000594862 C2orf82Q6UX34 121 aa11.02□□□□□ -0.65
SHKBP1-204ENST00000594862 IGLV5-45A0A087WSX0 123 aa11.01□□□□□ -0.65
SHKBP1-204ENST00000594862 RAB5BP61020 215 aa11.01□□□□□ -0.65
SHKBP1-204ENST00000594862 GAGE2EQ4V326 116 aa11.01□□□□□ -0.65
SHKBP1-204ENST00000594862 REG3GQ6UW15 175 aa11.01□□□□□ -0.65
SHKBP1-204ENST00000594862 CST9LQ9H4G1 147 aa11.01□□□□□ -0.65
SHKBP1-204ENST00000594862 GAGE2DQ9UEU5 116 aa11.01□□□□□ -0.65
SHKBP1-204ENST00000594862 F8VRH5 84 aa11□□□□□ -0.65
SHKBP1-204ENST00000594862 PDZD11Q5EBL8 140 aa11□□□□□ -0.65
SHKBP1-204ENST00000594862 C18orf32Q8TCD1 76 aa11□□□□□ -0.65
SHKBP1-204ENST00000594862 LINC00614P0C842 121 aa10.99□□□□□ -0.65
SHKBP1-204ENST00000594862 SMIM1B2RUZ4 78 aa10.98□□□□□ -0.65
SHKBP1-204ENST00000594862 H3BRM9 83 aa10.98□□□□□ -0.65
SHKBP1-204ENST00000594862 HBDP02042 147 aa10.98□□□□□ -0.65
SHKBP1-204ENST00000594862 PHF5AQ7RTV0 110 aaKnown RBP10.97□□□□□ -0.65
SHKBP1-204ENST00000594862 FAM19A5Q7Z5A7 132 aaPredicted RBP10.97□□□□□ -0.65
SHKBP1-204ENST00000594862 PSORS1C2Q9UIG4 136 aa10.97□□□□□ -0.65
SHKBP1-204ENST00000594862 HMCN2Q8NDA2 5059 aa10.96□□□□□ -0.65
SHKBP1-204ENST00000594862 UBR4Q5T4S7 5183 aa10.96□□□□□ -0.65
SHKBP1-204ENST00000594862 FAT3Q8TDW7 4589 aa10.96□□□□□ -0.65
SHKBP1-204ENST00000594862 ODF1Q14990 250 aa10.96□□□□□ -0.65
SHKBP1-204ENST00000594862 FAM168BA1KXE4 195 aa10.95□□□□□ -0.66
SHKBP1-204ENST00000594862 M0QXV9 152 aa10.95□□□□□ -0.66
SHKBP1-204ENST00000594862 ATP5LO75964 103 aa10.95□□□□□ -0.66
SHKBP1-204ENST00000594862 SRSF9Q13242 221 aaKnown RBP eCLIP10.95□□□□□ -0.66
SHKBP1-204ENST00000594862 COX7B2Q8TF08 81 aa10.95□□□□□ -0.66
SHKBP1-204ENST00000594862 LINC01600Q96MT4 127 aa10.95□□□□□ -0.66
SHKBP1-204ENST00000594862 MT1HL1P0DM35 61 aa10.94□□□□□ -0.66
SHKBP1-204ENST00000594862 C1orf137Q5JT78 98 aa10.94□□□□□ -0.66
SHKBP1-204ENST00000594862 IGLC3P0DOY3 106 aa10.93□□□□□ -0.66
SHKBP1-204ENST00000594862 A0A096LNJ9 63 aa10.92□□□□□ -0.66
SHKBP1-204ENST00000594862 NDUFA6P56556 154 aa10.92□□□□□ -0.66
SHKBP1-204ENST00000594862 UBE2BP63146 152 aa10.92□□□□□ -0.66
SHKBP1-204ENST00000594862 C9orf129Q5T035 196 aaKnown RBP10.92□□□□□ -0.66
SHKBP1-204ENST00000594862 URB1-AS1Q96HZ7 61 aa10.92□□□□□ -0.66
SHKBP1-204ENST00000594862 CHCHD1Q96BP2 118 aaKnown RBP10.91□□□□□ -0.66
SHKBP1-204ENST00000594862 YPEL4Q96NS1 127 aa10.91□□□□□ -0.66
SHKBP1-204ENST00000594862 SPINK8P0C7L1 97 aa10.9□□□□□ -0.66
SHKBP1-204ENST00000594862 IGLV7-43P04211 117 aa10.89□□□□□ -0.67
SHKBP1-204ENST00000594862 LBHQ53QV2 105 aaPredicted RBP10.89□□□□□ -0.67
SHKBP1-204ENST00000594862 DIRC1Q969H9 104 aa10.89□□□□□ -0.67
SHKBP1-204ENST00000594862 PLA2G2DQ9UNK4 145 aa10.89□□□□□ -0.67
SHKBP1-204ENST00000594862 SFTA2Q6UW10 78 aa10.88□□□□□ -0.67
SHKBP1-204ENST00000594862 KRTAP7-1Q8IUC3 87 aa10.88□□□□□ -0.67
SHKBP1-204ENST00000594862 TP73-AS1Q9UF72 201 aa10.88□□□□□ -0.67
SHKBP1-204ENST00000594862 PMCHL1Q16048 86 aa10.87□□□□□ -0.67
SHKBP1-204ENST00000594862 XAGE1AQ9HD64 81 aa10.87□□□□□ -0.67
SHKBP1-204ENST00000594862 IGLV5-39A0A0G2JS06 123 aa10.86□□□□□ -0.67
SHKBP1-204ENST00000594862 ZNF22P17026 224 aaPredicted RBP10.86□□□□□ -0.67
SHKBP1-204ENST00000594862 BAGE3Q86Y29 109 aa10.86□□□□□ -0.67
SHKBP1-204ENST00000594862 NUPR1O60356 82 aa10.85□□□□□ -0.67
SHKBP1-204ENST00000594862 CBLN2Q8IUK8 224 aa10.85□□□□□ -0.67
SHKBP1-204ENST00000594862 C22orf24Q9Y442 160 aa10.84□□□□□ -0.67
SHKBP1-204ENST00000594862 HSBP1O75506 76 aa10.83□□□□□ -0.68
SHKBP1-204ENST00000594862 CHTOPQ9Y3Y2 248 aaKnown RBP10.83□□□□□ -0.68
SHKBP1-204ENST00000594862 TRAV12-1A0A0B4J245 112 aa10.82□□□□□ -0.68
SHKBP1-204ENST00000594862 C11orf86A6NJI1 115 aa10.82□□□□□ -0.68
SHKBP1-204ENST00000594862 H0Y9J4 135 aa10.82□□□□□ -0.68
SHKBP1-204ENST00000594862 TMEM170BQ5T4T1 132 aa10.82□□□□□ -0.68
SHKBP1-204ENST00000594862 MRPL55Q7Z7F7 128 aaKnown RBP10.82□□□□□ -0.68
SHKBP1-204ENST00000594862 KRTAP11-1Q8IUC1 163 aa10.82□□□□□ -0.68
SHKBP1-204ENST00000594862 IFI27L1Q96BM0 104 aa10.82□□□□□ -0.68
SHKBP1-204ENST00000594862 KRTAP10-8P60410 259 aa10.81□□□□□ -0.68
SHKBP1-204ENST00000594862 COX17Q14061 63 aa10.81□□□□□ -0.68
SHKBP1-204ENST00000594862 IGLV5-37A0A075B6J1 123 aa10.79□□□□□ -0.68
SHKBP1-204ENST00000594862 NKAPP1Q8N9T2 125 aa10.79□□□□□ -0.68
SHKBP1-204ENST00000594862 ERG28Q9UKR5 140 aa10.78□□□□□ -0.68
SHKBP1-204ENST00000594862 TRGC2P03986 189 aa10.77□□□□□ -0.69
SHKBP1-204ENST00000594862 ZNF861PO60384 105 aa10.76□□□□□ -0.69
SHKBP1-204ENST00000594862 PFN2P35080 140 aa10.76□□□□□ -0.69
SHKBP1-204ENST00000594862 SLC7A5P1Q8MH63 180 aa10.76□□□□□ -0.69
SHKBP1-204ENST00000594862 IGLV1-50A0A075B6I6 118 aa10.75□□□□□ -0.69
SHKBP1-204ENST00000594862 TMEM223A0PJW6 202 aa10.74□□□□□ -0.69
SHKBP1-204ENST00000594862 RPL28P46779 137 aaKnown RBP10.74□□□□□ -0.69
SHKBP1-204ENST00000594862 ZNF625Q96I27 306 aaPredicted RBP10.74□□□□□ -0.69
SHKBP1-204ENST00000594862 LINC00167Q96N53 147 aa10.74□□□□□ -0.69
SHKBP1-204ENST00000594862 BCE1O60756 84 aa10.73□□□□□ -0.69
SHKBP1-204ENST00000594862 LEPROTL1O95214 131 aa10.73□□□□□ -0.69
SHKBP1-204ENST00000594862 RPL24P83731 157 aaKnown RBP10.73□□□□□ -0.69
SHKBP1-204ENST00000594862 FAM19A2Q8N3H0 131 aa10.73□□□□□ -0.69
SHKBP1-204ENST00000594862 SND1-IT1Q9HBX3 110 aa10.73□□□□□ -0.69
SHKBP1-204ENST00000594862 RPL13AP40429 203 aaKnown RBP10.72□□□□□ -0.69
SHKBP1-204ENST00000594862 HSPB8Q9UJY1 196 aa10.72□□□□□ -0.69
SHKBP1-204ENST00000594862 SERF1AO75920 110 aa10.71□□□□□ -0.69
SHKBP1-204ENST00000594862 TNXBP22105 4242 aa10.69□□□□□ -0.7
SHKBP1-204ENST00000594862 GAGE10A6NGK3 116 aa10.69□□□□□ -0.7
SHKBP1-204ENST00000594862 RPL37AP8A6NKH3 93 aa10.69□□□□□ -0.7
SHKBP1-204ENST00000594862 COLCA2A8K830 154 aa10.69□□□□□ -0.7
SHKBP1-204ENST00000594862 LINC00587B1AMM8 73 aa10.69□□□□□ -0.7
SHKBP1-204ENST00000594862 PLNP26678 52 aa10.69□□□□□ -0.7
SHKBP1-204ENST00000594862 HERV-K104P63124 156 aa10.69□□□□□ -0.7
SHKBP1-204ENST00000594862 KRTAP1-4P0C5Y4 121 aa10.68□□□□□ -0.7
SHKBP1-204ENST00000594862 VPREB1P12018 145 aa10.68□□□□□ -0.7
SHKBP1-204ENST00000594862 PRR26Q8N8Z3 221 aa10.68□□□□□ -0.7
SHKBP1-204ENST00000594862 ATP6V1G1O75348 118 aa10.67□□□□□ -0.7
SHKBP1-204ENST00000594862 LINC00158P58513 81 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms