RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 PACRGQ96M98 296 aaPredicted RBP9.81□□□□□ -0.84
LIG3-215ENST00000592690 IGLV5-45A0A087WSX0 123 aa9.8□□□□□ -0.84
LIG3-215ENST00000592690 TRBV30A0A0K0K1B3 111 aa9.8□□□□□ -0.84
LIG3-215ENST00000592690 KRTAP29-1A8MX34 341 aaPredicted RBP9.8□□□□□ -0.84
LIG3-215ENST00000592690 PRSS2P07478 247 aa9.8□□□□□ -0.84
LIG3-215ENST00000592690 C9orf116Q5BN46 136 aaPredicted RBP9.8□□□□□ -0.84
LIG3-215ENST00000592690 LRP1Q07954 4544 aaKnown RBP9.79□□□□□ -0.84
LIG3-215ENST00000592690 SMIM1B2RUZ4 78 aa9.79□□□□□ -0.84
LIG3-215ENST00000592690 J3QL48 77 aa9.79□□□□□ -0.84
LIG3-215ENST00000592690 RAB5BP61020 215 aa9.79□□□□□ -0.84
LIG3-215ENST00000592690 PRR3P79522 188 aaKnown RBP9.79□□□□□ -0.84
LIG3-215ENST00000592690 GAGE2EQ4V326 116 aa9.79□□□□□ -0.84
LIG3-215ENST00000592690 PDZD11Q5EBL8 140 aa9.79□□□□□ -0.84
LIG3-215ENST00000592690 GAGE2DQ9UEU5 116 aa9.79□□□□□ -0.84
LIG3-215ENST00000592690 FAT3Q8TDW7 4589 aa9.78□□□□□ -0.84
LIG3-215ENST00000592690 FAM168BA1KXE4 195 aa9.78□□□□□ -0.84
LIG3-215ENST00000592690 CKS1BP61024 79 aa9.78□□□□□ -0.84
LIG3-215ENST00000592690 C6orf226Q5I0X4 101 aa9.78□□□□□ -0.84
LIG3-215ENST00000592690 NDUFA6P56556 154 aa9.77□□□□□ -0.85
LIG3-215ENST00000592690 NDUFC2-KCTD14E9PQ53 114 aa9.76□□□□□ -0.85
LIG3-215ENST00000592690 SPINK8P0C7L1 97 aa9.76□□□□□ -0.85
LIG3-215ENST00000592690 PHF5AQ7RTV0 110 aaKnown RBP9.76□□□□□ -0.85
LIG3-215ENST00000592690 OXTP01178 125 aa9.75□□□□□ -0.85
LIG3-215ENST00000592690 TRGC2P03986 189 aa9.75□□□□□ -0.85
LIG3-215ENST00000592690 IGLC3P0DOY3 106 aa9.75□□□□□ -0.85
LIG3-215ENST00000592690 F8VRH5 84 aa9.74□□□□□ -0.85
LIG3-215ENST00000592690 ATP5LO75964 103 aa9.74□□□□□ -0.85
LIG3-215ENST00000592690 C9orf129Q5T035 196 aaKnown RBP9.74□□□□□ -0.85
LIG3-215ENST00000592690 FAM19A5Q7Z5A7 132 aaPredicted RBP9.74□□□□□ -0.85
LIG3-215ENST00000592690 KRTAP7-1Q8IUC3 87 aa9.74□□□□□ -0.85
LIG3-215ENST00000592690 COX7B2Q8TF08 81 aa9.74□□□□□ -0.85
LIG3-215ENST00000592690 CHCHD1Q96BP2 118 aaKnown RBP9.74□□□□□ -0.85
LIG3-215ENST00000592690 CXCL5P42830 114 aa9.73□□□□□ -0.85
LIG3-215ENST00000592690 H3BRM9 83 aa9.72□□□□□ -0.85
LIG3-215ENST00000592690 ZNF22P17026 224 aaPredicted RBP9.72□□□□□ -0.85
LIG3-215ENST00000592690 BAGE3Q86Y29 109 aa9.72□□□□□ -0.85
LIG3-215ENST00000592690 PSORS1C2Q9UIG4 136 aa9.71□□□□□ -0.86
LIG3-215ENST00000592690 C11orf86A6NJI1 115 aa9.7□□□□□ -0.86
LIG3-215ENST00000592690 COLCA2A8K830 154 aa9.7□□□□□ -0.86
LIG3-215ENST00000592690 KRTAP11-1Q8IUC1 163 aa9.7□□□□□ -0.86
LIG3-215ENST00000592690 FAM19A2Q8N3H0 131 aa9.7□□□□□ -0.86
LIG3-215ENST00000592690 IGLV5-39A0A0G2JS06 123 aa9.69□□□□□ -0.86
LIG3-215ENST00000592690 HSBP1O75506 76 aa9.69□□□□□ -0.86
LIG3-215ENST00000592690 LINC00310P59036 64 aa9.69□□□□□ -0.86
LIG3-215ENST00000592690 XAGE1AQ9HD64 81 aa9.69□□□□□ -0.86
LIG3-215ENST00000592690 M0QXV9 152 aa9.68□□□□□ -0.86
LIG3-215ENST00000592690 IFI27L1Q96BM0 104 aa9.68□□□□□ -0.86
LIG3-215ENST00000592690 CHTOPQ9Y3Y2 248 aaKnown RBP9.68□□□□□ -0.86
LIG3-215ENST00000592690 SCO1O75880 301 aa9.67□□□□□ -0.86
LIG3-215ENST00000592690 SERTAD4-AS1Q5TG53 156 aa9.67□□□□□ -0.86
LIG3-215ENST00000592690 SERF1AO75920 110 aa9.66□□□□□ -0.86
LIG3-215ENST00000592690 SRSF9Q13242 221 aaKnown RBP eCLIP9.66□□□□□ -0.86
LIG3-215ENST00000592690 C1orf137Q5JT78 98 aa9.66□□□□□ -0.86
LIG3-215ENST00000592690 TMEM170BQ5T4T1 132 aa9.66□□□□□ -0.86
LIG3-215ENST00000592690 SPINK6Q6UWN8 80 aa9.66□□□□□ -0.86
LIG3-215ENST00000592690 TRAV12-1A0A0B4J245 112 aa9.65□□□□□ -0.86
LIG3-215ENST00000592690 MT1HL1P0DM35 61 aa9.65□□□□□ -0.86
LIG3-215ENST00000592690 NUPR1O60356 82 aa9.64□□□□□ -0.87
LIG3-215ENST00000592690 UBE2BP63146 152 aa9.63□□□□□ -0.87
LIG3-215ENST00000592690 C22orf24Q9Y442 160 aa9.62□□□□□ -0.87
LIG3-215ENST00000592690 TMEM223A0PJW6 202 aa9.61□□□□□ -0.87
LIG3-215ENST00000592690 H0Y8G0 127 aa9.61□□□□□ -0.87
LIG3-215ENST00000592690 LEPROTL1O95214 131 aa9.6□□□□□ -0.87
LIG3-215ENST00000592690 IGLV7-43P04211 117 aa9.6□□□□□ -0.87
LIG3-215ENST00000592690 PFN2P35080 140 aa9.6□□□□□ -0.87
LIG3-215ENST00000592690 ZNF625Q96I27 306 aaPredicted RBP9.6□□□□□ -0.87
LIG3-215ENST00000592690 ODF1Q14990 250 aa9.59□□□□□ -0.87
LIG3-215ENST00000592690 REG3GQ6UW15 175 aa9.59□□□□□ -0.87
LIG3-215ENST00000592690 LINC01600Q96MT4 127 aa9.59□□□□□ -0.87
LIG3-215ENST00000592690 ERG28Q9UKR5 140 aa9.59□□□□□ -0.87
LIG3-215ENST00000592690 HMCN2Q8NDA2 5059 aa9.58□□□□□ -0.88
LIG3-215ENST00000592690 FABP4P15090 132 aa9.58□□□□□ -0.88
LIG3-215ENST00000592690 TNXBP22105 4242 aa9.58□□□□□ -0.88
LIG3-215ENST00000592690 MRPL55Q7Z7F7 128 aaKnown RBP9.57□□□□□ -0.88
LIG3-215ENST00000592690 TP73-AS1Q9UF72 201 aa9.57□□□□□ -0.88
LIG3-215ENST00000592690 PLA2G2DQ9UNK4 145 aa9.57□□□□□ -0.88
LIG3-215ENST00000592690 HIST1H2BKO60814 126 aa9.56□□□□□ -0.88
LIG3-215ENST00000592690 HIST1H2BJP06899 126 aa9.56□□□□□ -0.88
LIG3-215ENST00000592690 HIST1H2BOP23527 126 aa9.56□□□□□ -0.88
LIG3-215ENST00000592690 HIST1H2BBP33778 126 aa9.56□□□□□ -0.88
LIG3-215ENST00000592690 HIST1H2BDP58876 126 aa9.56□□□□□ -0.88
LIG3-215ENST00000592690 HIST1H2BCP62807 126 aa9.56□□□□□ -0.88
LIG3-215ENST00000592690 HIST2H2BEQ16778 126 aa9.56□□□□□ -0.88
LIG3-215ENST00000592690 LBHQ53QV2 105 aaPredicted RBP9.56□□□□□ -0.88
LIG3-215ENST00000592690 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.56□□□□□ -0.88
LIG3-215ENST00000592690 HIST1H2BHQ93079 126 aa9.56□□□□□ -0.88
LIG3-215ENST00000592690 HIST1H2BNQ99877 126 aa9.56□□□□□ -0.88
LIG3-215ENST00000592690 HIST1H2BMQ99879 126 aa9.56□□□□□ -0.88
LIG3-215ENST00000592690 SFTA2Q6UW10 78 aa9.55□□□□□ -0.88
LIG3-215ENST00000592690 SND1-IT1Q9HBX3 110 aa9.55□□□□□ -0.88
LIG3-215ENST00000592690 HSPB8Q9UJY1 196 aa9.55□□□□□ -0.88
LIG3-215ENST00000592690 IGLV5-37A0A075B6J1 123 aa9.54□□□□□ -0.88
LIG3-215ENST00000592690 COX17Q14061 63 aa9.54□□□□□ -0.88
LIG3-215ENST00000592690 LINC00167Q96N53 147 aa9.54□□□□□ -0.88
LIG3-215ENST00000592690 GAGE10A6NGK3 116 aa9.53□□□□□ -0.88
LIG3-215ENST00000592690 RPL37AP8A6NKH3 93 aa9.53□□□□□ -0.88
LIG3-215ENST00000592690 DIRC1Q969H9 104 aa9.53□□□□□ -0.88
LIG3-215ENST00000592690 PMCHL2Q9BQD1 86 aa9.53□□□□□ -0.88
LIG3-215ENST00000592690 H0Y9J4 135 aa9.52□□□□□ -0.89
LIG3-215ENST00000592690 NKAPP1Q8N9T2 125 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms