RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 C2orf91Q6ZV80 131 aa16.5■□□□□ 0.23
SHMT1-207ENST00000580002 UQCR10Q9UDW1 63 aa16.5■□□□□ 0.23
SHMT1-207ENST00000580002 NDUFA1O15239 70 aa16.49■□□□□ 0.23
SHMT1-207ENST00000580002 UNQ6190/PRO20217Q6UXQ8 127 aa16.49■□□□□ 0.23
SHMT1-207ENST00000580002 LCE6AA0A183 80 aa16.47■□□□□ 0.23
SHMT1-207ENST00000580002 DLEU1O43261 78 aa16.47■□□□□ 0.23
SHMT1-207ENST00000580002 DDTP30046 118 aa16.47■□□□□ 0.23
SHMT1-207ENST00000580002 CFAP161Q6P656 301 aa16.47■□□□□ 0.23
SHMT1-207ENST00000580002 NTN5Q8WTR8 489 aaPredicted RBP16.47■□□□□ 0.23
SHMT1-207ENST00000580002 A0A0J9YXY3 114 aa16.46■□□□□ 0.23
SHMT1-207ENST00000580002 LRCOL1A6NCL2 159 aa16.46■□□□□ 0.23
SHMT1-207ENST00000580002 SLPIP03973 132 aa16.46■□□□□ 0.23
SHMT1-207ENST00000580002 FRAS1Q86XX4 4008 aa16.46■□□□□ 0.23
SHMT1-207ENST00000580002 GVQW2A0A096LPI5 108 aaPredicted RBP16.46■□□□□ 0.22
SHMT1-207ENST00000580002 C1orf134Q5TEV5 83 aa16.46■□□□□ 0.22
SHMT1-207ENST00000580002 A0A0U1RRA0 63 aa16.45■□□□□ 0.22
SHMT1-207ENST00000580002 ZNF561-AS1K7EIQ3 104 aa16.45■□□□□ 0.22
SHMT1-207ENST00000580002 C9orf116Q5BN46 136 aaPredicted RBP16.45■□□□□ 0.22
SHMT1-207ENST00000580002 CKS1BP61024 79 aa16.44■□□□□ 0.22
SHMT1-207ENST00000580002 LINC00587B1AMM8 73 aa16.43■□□□□ 0.22
SHMT1-207ENST00000580002 SCGB1D4Q6XE38 83 aa16.43■□□□□ 0.22
SHMT1-207ENST00000580002 RYR2Q92736 4967 aa16.42■□□□□ 0.22
SHMT1-207ENST00000580002 ADAMTSL4-AS1Q5T5F5 129 aa16.41■□□□□ 0.22
SHMT1-207ENST00000580002 Q6ZRU5 148 aa16.41■□□□□ 0.22
SHMT1-207ENST00000580002 HNRNPA3P51991 378 aaKnown RBP16.4■□□□□ 0.22
SHMT1-207ENST00000580002 CAMK2N2Q96S95 79 aa16.4■□□□□ 0.22
SHMT1-207ENST00000580002 LITAFQ99732 161 aa16.4■□□□□ 0.22
SHMT1-207ENST00000580002 DAND5Q8N907 189 aa16.39■□□□□ 0.21
SHMT1-207ENST00000580002 C6orf48Q9UBA6 75 aa16.39■□□□□ 0.21
SHMT1-207ENST00000580002 RTL8CO15255 209 aa16.38■□□□□ 0.21
SHMT1-207ENST00000580002 SMIM13P0DJ93 91 aa16.38■□□□□ 0.21
SHMT1-207ENST00000580002 PFN2P35080 140 aa16.37■□□□□ 0.21
SHMT1-207ENST00000580002 CTAG1AP78358 180 aa16.37■□□□□ 0.21
SHMT1-207ENST00000580002 IGLV2-33A0A075B6J2 118 aaPredicted RBP16.36■□□□□ 0.21
SHMT1-207ENST00000580002 FUSP35637 526 aaKnown RBP eCLIP16.36■□□□□ 0.21
SHMT1-207ENST00000580002 MEIG1Q5JSS6 88 aa16.36■□□□□ 0.21
SHMT1-207ENST00000580002 C2orf48Q96LS8 159 aa16.36■□□□□ 0.21
SHMT1-207ENST00000580002 FAT2Q9NYQ8 4349 aa16.36■□□□□ 0.21
SHMT1-207ENST00000580002 CXCL5P42830 114 aa16.36■□□□□ 0.21
SHMT1-207ENST00000580002 HERV-K104P63124 156 aa16.36■□□□□ 0.21
SHMT1-207ENST00000580002 A0A087WTM6 91 aa16.35■□□□□ 0.21
SHMT1-207ENST00000580002 DNAH11Q96DT5 4516 aa16.35■□□□□ 0.21
SHMT1-207ENST00000580002 EIF4EBP3O60516 100 aaPredicted RBP16.34■□□□□ 0.21
SHMT1-207ENST00000580002 TNP2Q05952 138 aa16.34■□□□□ 0.21
SHMT1-207ENST00000580002 SYCNQ0VAF6 134 aa16.34■□□□□ 0.21
SHMT1-207ENST00000580002 ERG28Q9UKR5 140 aa16.34■□□□□ 0.21
SHMT1-207ENST00000580002 HIGD1BQ9P298 99 aa16.33■□□□□ 0.21
SHMT1-207ENST00000580002 NPC2P61916 151 aa16.33■□□□□ 0.2
SHMT1-207ENST00000580002 LINC00158P58513 81 aa16.31■□□□□ 0.2
SHMT1-207ENST00000580002 HECTD4Q9Y4D8 3996 aa16.31■□□□□ 0.2
SHMT1-207ENST00000580002 Q8N814 137 aa16.29■□□□□ 0.2
SHMT1-207ENST00000580002 CARD19Q96LW7 228 aa16.29■□□□□ 0.2
SHMT1-207ENST00000580002 MIR7-3HGQ8N6C7 128 aa16.28■□□□□ 0.2
SHMT1-207ENST00000580002 SFTA2Q6UW10 78 aa16.28■□□□□ 0.2
SHMT1-207ENST00000580002 HIST1H4GQ99525 98 aa16.28■□□□□ 0.2
SHMT1-207ENST00000580002 SRSF9Q13242 221 aaKnown RBP eCLIP16.27■□□□□ 0.2
SHMT1-207ENST00000580002 TRBV30A0A0K0K1B3 111 aa16.26■□□□□ 0.19
SHMT1-207ENST00000580002 TIMM17BO60830 172 aa16.26■□□□□ 0.19
SHMT1-207ENST00000580002 LINC01620Q4KN68 170 aa16.26■□□□□ 0.19
SHMT1-207ENST00000580002 SOSTDC1Q6X4U4 206 aa16.26■□□□□ 0.19
SHMT1-207ENST00000580002 SPANXB1Q9NS25 103 aaPredicted RBP16.26■□□□□ 0.19
SHMT1-207ENST00000580002 TMEM238C9JI98 176 aa16.26■□□□□ 0.19
SHMT1-207ENST00000580002 HINT1P49773 126 aaPredicted RBP16.25■□□□□ 0.19
SHMT1-207ENST00000580002 CIRBPQ14011 172 aaKnown RBP16.25■□□□□ 0.19
SHMT1-207ENST00000580002 C14orf177Q52M58 125 aa16.25■□□□□ 0.19
SHMT1-207ENST00000580002 MUSTN1Q8IVN3 82 aa16.25■□□□□ 0.19
SHMT1-207ENST00000580002 F8WDY8 70 aa16.23■□□□□ 0.19
SHMT1-207ENST00000580002 SPANXDQ9BXN6 97 aa16.23■□□□□ 0.19
SHMT1-207ENST00000580002 SPANXCQ9NY87 97 aa16.23■□□□□ 0.19
SHMT1-207ENST00000580002 CNBPP62633 177 aaKnown RBP16.23■□□□□ 0.19
SHMT1-207ENST00000580002 RYR3Q15413 4870 aa16.23■□□□□ 0.19
SHMT1-207ENST00000580002 GCSHP23434 173 aa16.22■□□□□ 0.19
SHMT1-207ENST00000580002 HSD52Q0P140 79 aa16.22■□□□□ 0.19
SHMT1-207ENST00000580002 Q6ZRP5 223 aa16.21■□□□□ 0.19
SHMT1-207ENST00000580002 FXYD2P54710 66 aa16.21■□□□□ 0.18
SHMT1-207ENST00000580002 LINC00308Q8TCZ7 52 aa16.21■□□□□ 0.18
SHMT1-207ENST00000580002 CEND1Q8N111 149 aa16.2■□□□□ 0.18
SHMT1-207ENST00000580002 DNAH5Q8TE73 4624 aa16.2■□□□□ 0.18
SHMT1-207ENST00000580002 PKD1P98161 4303 aa16.2■□□□□ 0.18
SHMT1-207ENST00000580002 COX17Q14061 63 aa16.19■□□□□ 0.18
SHMT1-207ENST00000580002 GAGE2EQ4V326 116 aa16.19■□□□□ 0.18
SHMT1-207ENST00000580002 SND1-IT1Q9HBX3 110 aa16.19■□□□□ 0.18
SHMT1-207ENST00000580002 XAGE1AQ9HD64 81 aa16.19■□□□□ 0.18
SHMT1-207ENST00000580002 GAGE2DQ9UEU5 116 aa16.19■□□□□ 0.18
SHMT1-207ENST00000580002 BVES-AS1Q5T3Y7 98 aa16.18■□□□□ 0.18
SHMT1-207ENST00000580002 RNF151Q2KHN1 245 aa16.18■□□□□ 0.18
SHMT1-207ENST00000580002 NDUFC2-KCTD14E9PQ53 114 aa16.17■□□□□ 0.18
SHMT1-207ENST00000580002 BATFQ16520 125 aa16.16■□□□□ 0.18
SHMT1-207ENST00000580002 TAL2Q16559 108 aa16.16■□□□□ 0.18
SHMT1-207ENST00000580002 Q8NDZ9 215 aa16.16■□□□□ 0.18
SHMT1-207ENST00000580002 M0R143 59 aa16.15■□□□□ 0.18
SHMT1-207ENST00000580002 KRTAP10-2P60368 255 aa16.15■□□□□ 0.18
SHMT1-207ENST00000580002 RPL18AQ02543 176 aaKnown RBP16.15■□□□□ 0.18
SHMT1-207ENST00000580002 TRAV16A0A0A6YYK6 109 aaPredicted RBP16.15■□□□□ 0.18
SHMT1-207ENST00000580002 LBHQ53QV2 105 aaPredicted RBP16.15■□□□□ 0.18
SHMT1-207ENST00000580002 SNHG12Q9BXW3 62 aa16.15■□□□□ 0.18
SHMT1-207ENST00000580002 EREGO14944 169 aa16.14■□□□□ 0.17
SHMT1-207ENST00000580002 C9orf163Q8N9P6 203 aa16.14■□□□□ 0.17
SHMT1-207ENST00000580002 A4D1N5 150 aa16.13■□□□□ 0.17
SHMT1-207ENST00000580002 GAGE2BQ13066 116 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms