RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 NDUFA1O15239 70 aa11.08□□□□□ -0.63
NUP88-210ENST00000574867 C9orf163Q8N9P6 203 aa11.08□□□□□ -0.63
NUP88-210ENST00000574867 COX7B2Q8TF08 81 aa11.08□□□□□ -0.63
NUP88-210ENST00000574867 GCSHP23434 173 aa11.08□□□□□ -0.64
NUP88-210ENST00000574867 CXCL5P42830 114 aa11.08□□□□□ -0.64
NUP88-210ENST00000574867 C6orf226Q5I0X4 101 aa11.08□□□□□ -0.64
NUP88-210ENST00000574867 CKS1BP61024 79 aa11.07□□□□□ -0.64
NUP88-210ENST00000574867 Q6ZRU5 148 aa11.06□□□□□ -0.64
NUP88-210ENST00000574867 PKIGQ9Y2B9 76 aa11.06□□□□□ -0.64
NUP88-210ENST00000574867 HERVK_113P61574 105 aa11.05□□□□□ -0.64
NUP88-210ENST00000574867 PKHD1P08F94 4074 aa11.05□□□□□ -0.64
NUP88-210ENST00000574867 RNF151Q2KHN1 245 aa11.04□□□□□ -0.64
NUP88-210ENST00000574867 C2orf82Q6UX34 121 aa11.04□□□□□ -0.64
NUP88-210ENST00000574867 TRBV30A0A0K0K1B3 111 aa11.03□□□□□ -0.64
NUP88-210ENST00000574867 SFTA2Q6UW10 78 aa11.03□□□□□ -0.64
NUP88-210ENST00000574867 UNQ6190/PRO20217Q6UXQ8 127 aa11.03□□□□□ -0.64
NUP88-210ENST00000574867 LINC01620Q4KN68 170 aa11.02□□□□□ -0.64
NUP88-210ENST00000574867 EPPK1P58107 5090 aaKnown RBP11.02□□□□□ -0.64
NUP88-210ENST00000574867 C10orf25Q5T742 122 aa11.02□□□□□ -0.65
NUP88-210ENST00000574867 KRTAP10-1P60331 282 aa11.01□□□□□ -0.65
NUP88-210ENST00000574867 C6orf48Q9UBA6 75 aa11.01□□□□□ -0.65
NUP88-210ENST00000574867 DNAH5Q8TE73 4624 aa11.01□□□□□ -0.65
NUP88-210ENST00000574867 SDIM1Q6ZPB5 146 aa11□□□□□ -0.65
NUP88-210ENST00000574867 PLEKHB2Q96CS7 222 aa11□□□□□ -0.65
NUP88-210ENST00000574867 LEPROTO15243 131 aa10.99□□□□□ -0.65
NUP88-210ENST00000574867 LOC107984640A0A0U1RRK4 108 aa10.99□□□□□ -0.65
NUP88-210ENST00000574867 E9PLD3 99 aa10.99□□□□□ -0.65
NUP88-210ENST00000574867 ZNF625Q96I27 306 aaPredicted RBP10.97□□□□□ -0.65
NUP88-210ENST00000574867 TLX1NBP0CAT3 122 aa10.97□□□□□ -0.65
NUP88-210ENST00000574867 J3QQQ9 107 aa10.96□□□□□ -0.65
NUP88-210ENST00000574867 Q6ZSA8 131 aa10.96□□□□□ -0.65
NUP88-210ENST00000574867 ATOH7Q8N100 152 aa10.96□□□□□ -0.65
NUP88-210ENST00000574867 STPG4Q8N801 248 aa10.96□□□□□ -0.65
NUP88-210ENST00000574867 SCGB1D1O95968 90 aa10.96□□□□□ -0.66
NUP88-210ENST00000574867 LGALS3P17931 250 aaKnown RBP10.96□□□□□ -0.66
NUP88-210ENST00000574867 PYY3Q5JQD4 70 aa10.96□□□□□ -0.66
NUP88-210ENST00000574867 DYNC1H1Q14204 4646 aaKnown RBP10.95□□□□□ -0.66
NUP88-210ENST00000574867 NMUP48645 174 aa10.95□□□□□ -0.66
NUP88-210ENST00000574867 TSPEAR-AS2P59090 65 aa10.95□□□□□ -0.66
NUP88-210ENST00000574867 NDUFA12Q9UI09 145 aa10.95□□□□□ -0.66
NUP88-210ENST00000574867 NDUFC2-KCTD14E9PQ53 114 aa10.94□□□□□ -0.66
NUP88-210ENST00000574867 RPL18AQ02543 176 aaKnown RBP10.94□□□□□ -0.66
NUP88-210ENST00000574867 LINC00474Q9P2X8 69 aa10.94□□□□□ -0.66
NUP88-210ENST00000574867 HERV-K104P63124 156 aa10.94□□□□□ -0.66
NUP88-210ENST00000574867 C9orf116Q5BN46 136 aaPredicted RBP10.94□□□□□ -0.66
NUP88-210ENST00000574867 A0A096LNI7 61 aa10.93□□□□□ -0.66
NUP88-210ENST00000574867 MYMXA0A1B0GTQ4 84 aa10.93□□□□□ -0.66
NUP88-210ENST00000574867 PTTG1IPP53801 180 aa10.93□□□□□ -0.66
NUP88-210ENST00000574867 CIRBPQ14011 172 aaKnown RBP10.93□□□□□ -0.66
NUP88-210ENST00000574867 HSBP1L1C9JCN9 74 aa10.92□□□□□ -0.66
NUP88-210ENST00000574867 FAM30AQ9NZY2 134 aa10.92□□□□□ -0.66
NUP88-210ENST00000574867 LRP1BQ9NZR2 4599 aa10.92□□□□□ -0.66
NUP88-210ENST00000574867 IGKV2-24A0A0C4DH68 120 aa10.91□□□□□ -0.66
NUP88-210ENST00000574867 GAGE2BQ13066 116 aa10.91□□□□□ -0.66
NUP88-210ENST00000574867 COX17Q14061 63 aa10.91□□□□□ -0.66
NUP88-210ENST00000574867 Q6ZRP5 223 aa10.91□□□□□ -0.66
NUP88-210ENST00000574867 SPACA4Q8TDM5 124 aa10.91□□□□□ -0.66
NUP88-210ENST00000574867 ERG28Q9UKR5 140 aa10.91□□□□□ -0.66
NUP88-210ENST00000574867 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.91□□□□□ -0.66
NUP88-210ENST00000574867 CDK2AP2O75956 126 aa10.91□□□□□ -0.66
NUP88-210ENST00000574867 JOSD1Q15040 202 aaPredicted RBP10.91□□□□□ -0.66
NUP88-210ENST00000574867 CHTF8P0CG12 524 aa10.9□□□□□ -0.66
NUP88-210ENST00000574867 IGKV2D-26A0A0A0MRZ7 120 aa10.89□□□□□ -0.67
NUP88-210ENST00000574867 ANKRD39Q53RE8 183 aa10.89□□□□□ -0.67
NUP88-210ENST00000574867 C14orf144Q96I85 54 aa10.89□□□□□ -0.67
NUP88-210ENST00000574867 PANO1I0J062 215 aa10.88□□□□□ -0.67
NUP88-210ENST00000574867 MAJINQ3KP22 176 aa10.88□□□□□ -0.67
NUP88-210ENST00000574867 PFN2P35080 140 aa10.88□□□□□ -0.67
NUP88-210ENST00000574867 GAGE2EQ4V326 116 aa10.88□□□□□ -0.67
NUP88-210ENST00000574867 GAGE2DQ9UEU5 116 aa10.88□□□□□ -0.67
NUP88-210ENST00000574867 TSTD3H0UI37 97 aa10.87□□□□□ -0.67
NUP88-210ENST00000574867 MEIG1Q5JSS6 88 aa10.87□□□□□ -0.67
NUP88-210ENST00000574867 SCXQ7RTU7 201 aa10.86□□□□□ -0.67
NUP88-210ENST00000574867 DPH3Q96FX2 82 aa10.86□□□□□ -0.67
NUP88-210ENST00000574867 A0A1B0GV90 55 aa10.86□□□□□ -0.67
NUP88-210ENST00000574867 BIRC6Q9NR09 4857 aa10.85□□□□□ -0.67
NUP88-210ENST00000574867 ZNF815PA8K554 130 aa10.85□□□□□ -0.67
NUP88-210ENST00000574867 DDTP30046 118 aa10.85□□□□□ -0.67
NUP88-210ENST00000574867 XGP55808 180 aa10.85□□□□□ -0.67
NUP88-210ENST00000574867 LINC00158P58513 81 aa10.85□□□□□ -0.67
NUP88-210ENST00000574867 CIRBP-AS1Q8TBR5 109 aa10.85□□□□□ -0.67
NUP88-210ENST00000574867 A0A087WYN8 130 aa10.84□□□□□ -0.67
NUP88-210ENST00000574867 DNAH8Q96JB1 4490 aa10.84□□□□□ -0.67
NUP88-210ENST00000574867 A0A0J9YXY3 114 aa10.83□□□□□ -0.68
NUP88-210ENST00000574867 SMIM13P0DJ93 91 aa10.83□□□□□ -0.68
NUP88-210ENST00000574867 PLAC8Q9NZF1 115 aa10.83□□□□□ -0.68
NUP88-210ENST00000574867 LBHQ53QV2 105 aaPredicted RBP10.83□□□□□ -0.68
NUP88-210ENST00000574867 C9orf129Q5T035 196 aaKnown RBP10.83□□□□□ -0.68
NUP88-210ENST00000574867 TTTY13Q9BZ97 58 aa10.83□□□□□ -0.68
NUP88-210ENST00000574867 XAGE1AQ9HD64 81 aa10.83□□□□□ -0.68
NUP88-210ENST00000574867 VAMP8Q9BV40 100 aa10.82□□□□□ -0.68
NUP88-210ENST00000574867 HAMPP81172 84 aa10.81□□□□□ -0.68
NUP88-210ENST00000574867 A0A0U1RRA0 63 aa10.81□□□□□ -0.68
NUP88-210ENST00000574867 PCP2Q8IVA1 136 aa10.81□□□□□ -0.68
NUP88-210ENST00000574867 SND1-IT1Q9HBX3 110 aa10.81□□□□□ -0.68
NUP88-210ENST00000574867 PRO1933Q9H354 126 aa10.8□□□□□ -0.68
NUP88-210ENST00000574867 APOBP04114 4563 aaKnown RBP10.8□□□□□ -0.68
NUP88-210ENST00000574867 TIMM17BO60830 172 aa10.8□□□□□ -0.68
NUP88-210ENST00000574867 MIR7-3HGQ8N6C7 128 aa10.8□□□□□ -0.68
NUP88-210ENST00000574867 EPM2AB3EWF7 344 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms