RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 Q6ZN92 141 aa11.09□□□□□ -0.63
NUP88-203ENST00000572019 TMEM136Q6ZRR5 245 aa11.09□□□□□ -0.63
NUP88-203ENST00000572019 ALKBH7Q9BT30 221 aaPredicted RBP11.09□□□□□ -0.63
NUP88-203ENST00000572019 CDIP1Q9H305 208 aa11.08□□□□□ -0.64
NUP88-203ENST00000572019 CDKN2A-AS1Q9UH64 79 aa11.08□□□□□ -0.64
NUP88-203ENST00000572019 C2orf66Q6UXQ4 117 aa11.07□□□□□ -0.64
NUP88-203ENST00000572019 C2orf88Q9BSF0 95 aa11.07□□□□□ -0.64
NUP88-203ENST00000572019 TPRXLQ17RH7 258 aa11.06□□□□□ -0.64
NUP88-203ENST00000572019 LINC00304Q8N9R0 145 aa11.06□□□□□ -0.64
NUP88-203ENST00000572019 IGLV7-46A0A075B6I9 117 aa11.05□□□□□ -0.64
NUP88-203ENST00000572019 IGIPA6NJ69 53 aa11.05□□□□□ -0.64
NUP88-203ENST00000572019 SCO1O75880 301 aa11.05□□□□□ -0.64
NUP88-203ENST00000572019 S100A8P05109 93 aa11.05□□□□□ -0.64
NUP88-203ENST00000572019 FAM19A3Q7Z5A8 133 aa11.05□□□□□ -0.64
NUP88-203ENST00000572019 VCX2Q9H322 139 aa11.05□□□□□ -0.64
NUP88-203ENST00000572019 PRSS47A8MTI9 375 aa11.04□□□□□ -0.64
NUP88-203ENST00000572019 F8VRH5 84 aa11.04□□□□□ -0.64
NUP88-203ENST00000572019 AKAP14Q86UN6 197 aa11.04□□□□□ -0.64
NUP88-203ENST00000572019 CYSLTR1Q9Y271 337 aa11.04□□□□□ -0.64
NUP88-203ENST00000572019 hCG_2014768A0A024R1R8 64 aa11.02□□□□□ -0.65
NUP88-203ENST00000572019 Q8N8P6 123 aa11.01□□□□□ -0.65
NUP88-203ENST00000572019 MAP1LC3AQ9H492 121 aa11.01□□□□□ -0.65
NUP88-203ENST00000572019 UBE2AP49459 152 aa11□□□□□ -0.65
NUP88-203ENST00000572019 PNRC1Q12796 327 aaPredicted RBP11□□□□□ -0.65
NUP88-203ENST00000572019 FAM229BQ4G0N7 80 aa11□□□□□ -0.65
NUP88-203ENST00000572019 PRLHP81277 87 aa10.99□□□□□ -0.65
NUP88-203ENST00000572019 SMIM1B2RUZ4 78 aa10.98□□□□□ -0.65
NUP88-203ENST00000572019 HERVK_113P63121 156 aa10.98□□□□□ -0.65
NUP88-203ENST00000572019 ATP5L2Q7Z4Y8 100 aa10.98□□□□□ -0.65
NUP88-203ENST00000572019 IGLV5-37A0A075B6J1 123 aa10.97□□□□□ -0.65
NUP88-203ENST00000572019 IGKV2-28A0A075B6P5 120 aa10.97□□□□□ -0.65
NUP88-203ENST00000572019 IGKV2D-28P01615 120 aa10.97□□□□□ -0.65
NUP88-203ENST00000572019 C3orf22Q8N5N4 141 aa10.97□□□□□ -0.65
NUP88-203ENST00000572019 KRTAP4-1Q9BYQ7 146 aa10.97□□□□□ -0.65
NUP88-203ENST00000572019 PPDPFQ9H3Y8 114 aa10.97□□□□□ -0.65
NUP88-203ENST00000572019 RAB5BP61020 215 aa10.96□□□□□ -0.65
NUP88-203ENST00000572019 GEMIN7Q9H840 131 aaKnown RBP10.96□□□□□ -0.65
NUP88-203ENST00000572019 LAMTOR2Q9Y2Q5 125 aa10.96□□□□□ -0.65
NUP88-203ENST00000572019 IGKV2D-26A0A0A0MRZ7 120 aa10.94□□□□□ -0.66
NUP88-203ENST00000572019 NPSP0C0P6 89 aa10.94□□□□□ -0.66
NUP88-203ENST00000572019 CXCL5P42830 114 aa10.94□□□□□ -0.66
NUP88-203ENST00000572019 PEA15Q15121 130 aa10.94□□□□□ -0.66
NUP88-203ENST00000572019 ORMDL2Q53FV1 153 aa10.94□□□□□ -0.66
NUP88-203ENST00000572019 COX7B2Q8TF08 81 aa10.94□□□□□ -0.66
NUP88-203ENST00000572019 TMEM238C9JI98 176 aa10.93□□□□□ -0.66
NUP88-203ENST00000572019 FSIP2Q5CZC0 6907 aa10.92□□□□□ -0.66
NUP88-203ENST00000572019 A0A1B0GVG6 124 aa10.92□□□□□ -0.66
NUP88-203ENST00000572019 ADCYAP1P18509 176 aa10.92□□□□□ -0.66
NUP88-203ENST00000572019 NKAPP1Q8N9T2 125 aa10.92□□□□□ -0.66
NUP88-203ENST00000572019 SEC11AP67812 179 aa10.91□□□□□ -0.66
NUP88-203ENST00000572019 SPINK8P0C7L1 97 aa10.9□□□□□ -0.66
NUP88-203ENST00000572019 PDZD11Q5EBL8 140 aa10.9□□□□□ -0.66
NUP88-203ENST00000572019 LCE2DQ5TA82 110 aaPredicted RBP10.9□□□□□ -0.66
NUP88-203ENST00000572019 Q8NDZ9 215 aa10.9□□□□□ -0.66
NUP88-203ENST00000572019 TOMM6Q96B49 74 aa10.9□□□□□ -0.66
NUP88-203ENST00000572019 TIMM17AQ99595 171 aa10.9□□□□□ -0.66
NUP88-203ENST00000572019 IGLV5-45A0A087WSX0 123 aa10.89□□□□□ -0.67
NUP88-203ENST00000572019 FAM19A1Q7Z5A9 133 aa10.89□□□□□ -0.67
NUP88-203ENST00000572019 PLEKHB2Q96CS7 222 aa10.88□□□□□ -0.67
NUP88-203ENST00000572019 TMEM126AQ9H061 195 aa10.88□□□□□ -0.67
NUP88-203ENST00000572019 M0R378 163 aa10.87□□□□□ -0.67
NUP88-203ENST00000572019 VPREB1P12018 145 aa10.87□□□□□ -0.67
NUP88-203ENST00000572019 TINCRA0A1B0GVN0 87 aa10.86□□□□□ -0.67
NUP88-203ENST00000572019 K7EMI3 77 aa10.86□□□□□ -0.67
NUP88-203ENST00000572019 KRTAP13-3Q3SY46 172 aa10.86□□□□□ -0.67
NUP88-203ENST00000572019 NXT2Q9NPJ8 142 aaKnown RBP10.86□□□□□ -0.67
NUP88-203ENST00000572019 PFN2P35080 140 aa10.85□□□□□ -0.67
NUP88-203ENST00000572019 PAPPA-AS1Q5QFB9 102 aa10.85□□□□□ -0.67
NUP88-203ENST00000572019 CRCT1Q9UGL9 99 aa10.85□□□□□ -0.67
NUP88-203ENST00000572019 KIAA1644Q3SXP7 199 aa10.84□□□□□ -0.67
NUP88-203ENST00000572019 ASB16-AS1Q495Z4 193 aa10.84□□□□□ -0.67
NUP88-203ENST00000572019 ERASQ7Z444 233 aa10.84□□□□□ -0.67
NUP88-203ENST00000572019 SCGB3A1Q96QR1 104 aa10.84□□□□□ -0.67
NUP88-203ENST00000572019 CTAG1AP78358 180 aa10.83□□□□□ -0.68
NUP88-203ENST00000572019 SND1-IT1Q9HBX3 110 aa10.83□□□□□ -0.68
NUP88-203ENST00000572019 CST9LQ9H4G1 147 aa10.82□□□□□ -0.68
NUP88-203ENST00000572019 LINC01547P58512 204 aaPredicted RBP10.81□□□□□ -0.68
NUP88-203ENST00000572019 CBLN2Q8IUK8 224 aa10.8□□□□□ -0.68
NUP88-203ENST00000572019 DAND5Q8N907 189 aa10.8□□□□□ -0.68
NUP88-203ENST00000572019 HIGD2AQ9BW72 106 aa10.8□□□□□ -0.68
NUP88-203ENST00000572019 ATP5LO75964 103 aa10.79□□□□□ -0.68
NUP88-203ENST00000572019 FP248Q71RG6 208 aaPredicted RBP10.79□□□□□ -0.68
NUP88-203ENST00000572019 SPRR4Q96PI1 79 aa10.79□□□□□ -0.68
NUP88-203ENST00000572019 RAB14P61106 215 aa10.77□□□□□ -0.69
NUP88-203ENST00000572019 SPAG11AQ6PDA7 123 aa10.77□□□□□ -0.69
NUP88-203ENST00000572019 LINC00337Q8N6G1 96 aa10.77□□□□□ -0.69
NUP88-203ENST00000572019 IGLV5-39A0A0G2JS06 123 aa10.76□□□□□ -0.69
NUP88-203ENST00000572019 G0S2P27469 103 aa10.76□□□□□ -0.69
NUP88-203ENST00000572019 Q8NBF4 154 aa10.76□□□□□ -0.69
NUP88-203ENST00000572019 ANAPC16Q96DE5 110 aa10.76□□□□□ -0.69
NUP88-203ENST00000572019 ZNF625Q96I27 306 aaPredicted RBP10.76□□□□□ -0.69
NUP88-203ENST00000572019 ERG28Q9UKR5 140 aa10.76□□□□□ -0.69
NUP88-203ENST00000572019 MT-ND4LP03901 98 aa10.75□□□□□ -0.69
NUP88-203ENST00000572019 LCE2CQ5TA81 110 aa10.75□□□□□ -0.69
NUP88-203ENST00000572019 PMVKQ15126 192 aa10.74□□□□□ -0.69
NUP88-203ENST00000572019 LINC01546A6NGU7 62 aa10.73□□□□□ -0.69
NUP88-203ENST00000572019 GNB1LQ9BYB4 327 aa10.72□□□□□ -0.69
NUP88-203ENST00000572019 MRPL18Q9H0U6 180 aaKnown RBP10.72□□□□□ -0.69
NUP88-203ENST00000572019 IGLC3P0DOY3 106 aa10.71□□□□□ -0.69
NUP88-203ENST00000572019 ZNF22P17026 224 aaPredicted RBP10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms