RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 H3BVH4 76 aa7.29□□□□□ -1.24
CDH3-208ENST00000569036 VCYO14598 125 aa7.29□□□□□ -1.24
CDH3-208ENST00000569036 S100A4P26447 101 aaKnown RBP7.29□□□□□ -1.24
CDH3-208ENST00000569036 KIR2DL4Q99706 377 aa7.29□□□□□ -1.24
CDH3-208ENST00000569036 PRO1854Q9UHT4 67 aa7.29□□□□□ -1.24
CDH3-208ENST00000569036 IGHV3-30P01768 117 aa7.28□□□□□ -1.24
CDH3-208ENST00000569036 SCGB1C2P0DMR2 95 aa7.28□□□□□ -1.24
CDH3-208ENST00000569036 IGHV3-30-5P0DP03 117 aa7.28□□□□□ -1.24
CDH3-208ENST00000569036 RPL13AP40429 203 aaKnown RBP7.28□□□□□ -1.24
CDH3-208ENST00000569036 SMCPP49901 116 aaPredicted RBP7.28□□□□□ -1.24
CDH3-208ENST00000569036 DAZ2Q13117 558 aaKnown RBP7.28□□□□□ -1.24
CDH3-208ENST00000569036 ZFAND2AQ8N6M9 145 aa7.28□□□□□ -1.24
CDH3-208ENST00000569036 PLEKHB2Q96CS7 222 aa7.28□□□□□ -1.24
CDH3-208ENST00000569036 IGLV4-69A0A075B6H9 119 aa7.27□□□□□ -1.25
CDH3-208ENST00000569036 LOC107984156A0A0G2JMH3 177 aa7.27□□□□□ -1.25
CDH3-208ENST00000569036 TRBV27A0A0K0K1C4 114 aa7.27□□□□□ -1.25
CDH3-208ENST00000569036 IGIPA6NJ69 53 aa7.27□□□□□ -1.25
CDH3-208ENST00000569036 LEPROTO15243 131 aa7.27□□□□□ -1.25
CDH3-208ENST00000569036 PSMB2P49721 201 aa7.27□□□□□ -1.25
CDH3-208ENST00000569036 POLR2KP53803 58 aaKnown RBP7.27□□□□□ -1.25
CDH3-208ENST00000569036 ZNF876PQ49A33 203 aa7.27□□□□□ -1.25
CDH3-208ENST00000569036 IGFL4Q6B9Z1 124 aa7.27□□□□□ -1.25
CDH3-208ENST00000569036 ARL17AQ8IVW1 177 aa7.27□□□□□ -1.25
CDH3-208ENST00000569036 RNF182Q8N6D2 247 aa7.27□□□□□ -1.25
CDH3-208ENST00000569036 PRO0255Q9UI72 69 aa7.27□□□□□ -1.25
CDH3-208ENST00000569036 TRAV26-2A0A0B4J265 109 aa7.26□□□□□ -1.25
CDH3-208ENST00000569036 FAM240AA0A1B0GVK7 77 aa7.26□□□□□ -1.25
CDH3-208ENST00000569036 LGALS3P17931 250 aaKnown RBP7.26□□□□□ -1.25
CDH3-208ENST00000569036 ATXN8Q156A1 80 aa7.26□□□□□ -1.25
CDH3-208ENST00000569036 LINC01556Q5JQF7 62 aa7.26□□□□□ -1.25
CDH3-208ENST00000569036 IGHV3-38A0A0C4DH36 116 aa7.25□□□□□ -1.25
CDH3-208ENST00000569036 J3QQQ9 107 aa7.25□□□□□ -1.25
CDH3-208ENST00000569036 TCL1BO95988 128 aa7.25□□□□□ -1.25
CDH3-208ENST00000569036 IGHV3-53P01767 116 aa7.25□□□□□ -1.25
CDH3-208ENST00000569036 GYPEP15421 78 aa7.25□□□□□ -1.25
CDH3-208ENST00000569036 ZNF415Q09FC8 603 aa7.25□□□□□ -1.25
CDH3-208ENST00000569036 GAGE5Q13069 117 aa7.25□□□□□ -1.25
CDH3-208ENST00000569036 GAGE6Q13070 117 aa7.25□□□□□ -1.25
CDH3-208ENST00000569036 ZFP2Q6ZN57 461 aa7.25□□□□□ -1.25
CDH3-208ENST00000569036 KIF25-AS1Q9Y6Z4 181 aa7.25□□□□□ -1.25
CDH3-208ENST00000569036 TRGV1A0A0A0MS02 117 aa7.24□□□□□ -1.25
CDH3-208ENST00000569036 KLLNB2CW77 178 aa7.24□□□□□ -1.25
CDH3-208ENST00000569036 H3BT86 120 aa7.24□□□□□ -1.25
CDH3-208ENST00000569036 K7EQD1 137 aa7.24□□□□□ -1.25
CDH3-208ENST00000569036 SLC25A20O43772 301 aa7.24□□□□□ -1.25
CDH3-208ENST00000569036 CFC1BP0CG36 223 aa7.24□□□□□ -1.25
CDH3-208ENST00000569036 CFC1P0CG37 223 aa7.24□□□□□ -1.25
CDH3-208ENST00000569036 ANAPC13Q9BS18 74 aa7.24□□□□□ -1.25
CDH3-208ENST00000569036 TRBV30A0A0K0K1B3 111 aa7.23□□□□□ -1.25
CDH3-208ENST00000569036 RHODO00212 210 aa7.23□□□□□ -1.25
CDH3-208ENST00000569036 SNCGO76070 127 aa7.23□□□□□ -1.25
CDH3-208ENST00000569036 IGHV3-33P01772 117 aa7.23□□□□□ -1.25
CDH3-208ENST00000569036 MT-ATP8P03928 68 aa7.23□□□□□ -1.25
CDH3-208ENST00000569036 MGPP08493 103 aa7.23□□□□□ -1.25
CDH3-208ENST00000569036 RNASE4P34096 147 aaKnown RBP7.23□□□□□ -1.25
CDH3-208ENST00000569036 ANXA2RQ3ZCQ2 193 aa7.23□□□□□ -1.25
CDH3-208ENST00000569036 ANKRD29Q8N6D5 301 aa7.23□□□□□ -1.25
CDH3-208ENST00000569036 CARD19Q96LW7 228 aa7.23□□□□□ -1.25
CDH3-208ENST00000569036 TMEM223A0PJW6 202 aa7.22□□□□□ -1.25
CDH3-208ENST00000569036 M0R2P5 195 aa7.22□□□□□ -1.25
CDH3-208ENST00000569036 RNASE3P12724 160 aaKnown RBP7.22□□□□□ -1.25
CDH3-208ENST00000569036 KRTAP10-8P60410 259 aa7.22□□□□□ -1.25
CDH3-208ENST00000569036 PRR9Q5T870 116 aa7.22□□□□□ -1.25
CDH3-208ENST00000569036 C14orf178Q8N769 122 aaPredicted RBP7.22□□□□□ -1.25
CDH3-208ENST00000569036 RPL39LQ96EH5 51 aaKnown RBP7.22□□□□□ -1.25
CDH3-208ENST00000569036 AMELXQ99217 191 aa7.22□□□□□ -1.25
CDH3-208ENST00000569036 PYGO1Q9Y3Y4 419 aa7.22□□□□□ -1.25
CDH3-208ENST00000569036 A0A0J9YXV3 536 aa7.21□□□□□ -1.26
CDH3-208ENST00000569036 A0A0J9YXY3 114 aa7.21□□□□□ -1.26
CDH3-208ENST00000569036 TRBV10-2A0A0K0K1G8 114 aa7.21□□□□□ -1.26
CDH3-208ENST00000569036 TIMM17BO60830 172 aa7.21□□□□□ -1.26
CDH3-208ENST00000569036 TSHBP01222 138 aa7.21□□□□□ -1.26
CDH3-208ENST00000569036 COX6CP09669 75 aa7.21□□□□□ -1.26
CDH3-208ENST00000569036 GAGE2BQ13066 116 aa7.21□□□□□ -1.26
CDH3-208ENST00000569036 FHL2Q14192 279 aa7.21□□□□□ -1.26
CDH3-208ENST00000569036 GAGE2EQ4V326 116 aa7.21□□□□□ -1.26
CDH3-208ENST00000569036 PIK3CD-AS1Q5SR53 167 aa7.21□□□□□ -1.26
CDH3-208ENST00000569036 FAM159AQ6UWV7 190 aa7.21□□□□□ -1.26
CDH3-208ENST00000569036 C11orf72Q8NBR9 251 aa7.21□□□□□ -1.26
CDH3-208ENST00000569036 PPDPFQ9H3Y8 114 aa7.21□□□□□ -1.26
CDH3-208ENST00000569036 SPANXCQ9NY87 97 aa7.21□□□□□ -1.26
CDH3-208ENST00000569036 GAGE2DQ9UEU5 116 aa7.21□□□□□ -1.26
CDH3-208ENST00000569036 IGHV3-30-3P0DP02 117 aa7.2□□□□□ -1.26
CDH3-208ENST00000569036 IFITM1P13164 125 aa7.2□□□□□ -1.26
CDH3-208ENST00000569036 TMEM170BQ5T4T1 132 aa7.2□□□□□ -1.26
CDH3-208ENST00000569036 SUMO4Q6EEV6 95 aa7.2□□□□□ -1.26
CDH3-208ENST00000569036 COPS9Q8WXC6 57 aa7.2□□□□□ -1.26
CDH3-208ENST00000569036 C9orf85Q96MD7 179 aa7.2□□□□□ -1.26
CDH3-208ENST00000569036 ACYP1P07311 99 aa7.19□□□□□ -1.26
CDH3-208ENST00000569036 TRAV8-4A0A0B4J246 113 aa7.18□□□□□ -1.26
CDH3-208ENST00000569036 A4D1N5 150 aa7.18□□□□□ -1.26
CDH3-208ENST00000569036 C9JAW5 83 aa7.18□□□□□ -1.26
CDH3-208ENST00000569036 UBE2WQ96B02 151 aa7.18□□□□□ -1.26
CDH3-208ENST00000569036 IMUPQ9GZP8 106 aa7.18□□□□□ -1.26
CDH3-208ENST00000569036 GAGE12JA6NER3 117 aa7.17□□□□□ -1.26
CDH3-208ENST00000569036 I3L3M4 83 aa7.17□□□□□ -1.26
CDH3-208ENST00000569036 NDUFV3P56181 108 aaKnown RBP7.17□□□□□ -1.26
CDH3-208ENST00000569036 TSPEAR-AS2P59090 65 aa7.17□□□□□ -1.26
CDH3-208ENST00000569036 GAGE4Q13068 117 aa7.17□□□□□ -1.26
CDH3-208ENST00000569036 C20orf203Q8NBC4 194 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms