RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 TRGV1A0A0A0MS02 117 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 TRBV30A0A0K0K1B3 111 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 SMIM31A0A1B0GVY4 71 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 KANTRA0A1W2PQU2 76 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 H3BUT2 72 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 M0R3E3 92 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 UQCR11O14957 56 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 HMGN2P05204 90 aaKnown RBP0.46□□□□□ -2.34
VPS35-207ENST00000568191 IGLC2P0DOY2 106 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 IGLC3P0DOY3 106 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 ACYP2P14621 99 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 ZNF137PP52743 207 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 SMIM11AP58511 58 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 COX17Q14061 63 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 BVES-AS1Q5T3Y7 98 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 CFAP126Q5VTH2 177 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 C10orf99Q6UWK7 81 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 LINC00643Q86TS7 51 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 LINC01600Q96MT4 127 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 PRR15LQ9BU68 103 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 SMCO4Q9NRQ5 59 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 PSENENQ9NZ42 101 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 LINC01558Q9Y6Z2 57 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 ABCC1P33527 1531 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 CUX1P39880 1505 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 PKDREJQ9NTG1 2253 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 TTC28Q96AY4 2481 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 RGPD1P0DJD0 1748 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 CREBBPQ92793 2442 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 PTPRQQ9UMZ3 2332 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 TARBP1Q13395 1621 aaKnown RBP0.46□□□□□ -2.34
VPS35-207ENST00000568191 NHSL1Q5SYE7 1610 aa0.46□□□□□ -2.34
VPS35-207ENST00000568191 SSC5DA1L4H1 1573 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 INO80Q9ULG1 1556 aaPredicted RBP0.45□□□□□ -2.34
VPS35-207ENST00000568191 USF3Q68DE3 2245 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 BDP1A6H8Y1 2624 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 MAGI3Q5TCQ9 1506 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 XRN1Q8IZH2 1706 aaKnown RBP0.45□□□□□ -2.34
VPS35-207ENST00000568191 PIEZO2Q9H5I5 2752 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 A0A087WVE0 104 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 A0A096LNT2 108 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 A0A1B0GWA3 101 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 C7orf77A4D0Y5 90 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 IQCF6A8MYZ5 107 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 PDCD5O14737 125 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 LY6G6CO95867 125 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 CFDP00746 253 aaPredicted RBP0.45□□□□□ -2.34
VPS35-207ENST00000568191 ACYP1P07311 99 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 MGPP08493 103 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 ARMS2P0C7Q2 107 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 DEFA5Q01523 94 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 HMGN3Q15651 99 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 Q5BKY6 102 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 FDCSPQ8NFU4 85 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 SMIM11BQ8TCY0 68 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 SMIM4Q8WVI0 70 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 PLCH1Q4KWH8 1693 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 UBR3Q6ZT12 1888 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 ZFHX3Q15911 3703 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 PIK3C2BO00750 1634 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 NCOR1O75376 2440 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 COL14A1Q05707 1796 aaKnown RBP0.45□□□□□ -2.34
VPS35-207ENST00000568191 CEP170BQ9Y4F5 1589 aaPredicted RBP0.45□□□□□ -2.34
VPS35-207ENST00000568191 SETBP1Q9Y6X0 1596 aa0.45□□□□□ -2.34
VPS35-207ENST00000568191 ZNF831Q5JPB2 1677 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 C1orf167Q5SNV9 1468 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 GVQW2A0A096LPI5 108 aaPredicted RBP0.44□□□□□ -2.34
VPS35-207ENST00000568191 MYMXA0A1B0GTQ4 84 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 D6R8Y8 96 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 G3V318 75 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 LEPROTL1O95214 131 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 SPINT3P49223 89 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 RPL37P61927 97 aaKnown RBP0.44□□□□□ -2.34
VPS35-207ENST00000568191 PLGLAQ15195 96 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 SPINK13Q1W4C9 94 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 MUSTN1Q8IVN3 82 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 C18orf32Q8TCD1 76 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 PLAC4Q8WY50 150 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 SPRR4Q96PI1 79 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 LINC00472Q9H8W2 130 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 LINC00846Q9NV44 126 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 MADDQ8WXG6 1647 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 MUC5BQ9HC84 5762 aaPredicted RBP0.44□□□□□ -2.34
VPS35-207ENST00000568191 BCORQ6W2J9 1755 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 THOC2Q8NI27 1593 aaKnown RBP0.44□□□□□ -2.34
VPS35-207ENST00000568191 TIAM2Q8IVF5 1701 aa0.44□□□□□ -2.34
VPS35-207ENST00000568191 PARP4Q9UKK3 1724 aaKnown RBP0.44□□□□□ -2.34
VPS35-207ENST00000568191 EFCAB5A4FU69 1503 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 DUOX2Q9NRD8 1548 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 WIZO95785 1651 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 CFAP43Q8NDM7 1665 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 IGF2RP11717 2491 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 ATP7BP35670 1465 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 KIAA0556O60303 1618 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 CICQ96RK0 1608 aaPredicted RBP0.43□□□□□ -2.34
VPS35-207ENST00000568191 CCDC180Q9P1Z9 1646 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 CEBPZOSA8MTT3 80 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 H0Y9P7 68 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 GCHFRP30047 84 aa0.43□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms