RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 C6orf223Q8N319 242 aa20.21■□□□□ 0.83
CTCF-203ENST00000566078 CXCL5P42830 114 aa20.2■□□□□ 0.82
CTCF-203ENST00000566078 HERV-K104P63124 156 aa20.2■□□□□ 0.82
CTCF-203ENST00000566078 USP17L23D6RBM5 183 aa20.2■□□□□ 0.82
CTCF-203ENST00000566078 ZNF561-AS1K7EIQ3 104 aa20.2■□□□□ 0.82
CTCF-203ENST00000566078 CTAG1AP78358 180 aa20.2■□□□□ 0.82
CTCF-203ENST00000566078 SFTA2Q6UW10 78 aa20.2■□□□□ 0.82
CTCF-203ENST00000566078 GVQW2A0A096LPI5 108 aaPredicted RBP20.18■□□□□ 0.82
CTCF-203ENST00000566078 NTN5Q8WTR8 489 aaPredicted RBP20.16■□□□□ 0.82
CTCF-203ENST00000566078 LECT2O14960 151 aa20.16■□□□□ 0.82
CTCF-203ENST00000566078 MEIG1Q5JSS6 88 aa20.15■□□□□ 0.82
CTCF-203ENST00000566078 Q6ZRN7 208 aaPredicted RBP20.15■□□□□ 0.82
CTCF-203ENST00000566078 LINC00587B1AMM8 73 aa20.13■□□□□ 0.81
CTCF-203ENST00000566078 TMEM238C9JI98 176 aa20.13■□□□□ 0.81
CTCF-203ENST00000566078 UNQ6190/PRO20217Q6UXQ8 127 aa20.12■□□□□ 0.81
CTCF-203ENST00000566078 LITAFQ99732 161 aa20.12■□□□□ 0.81
CTCF-203ENST00000566078 WFDC2Q14508 124 aa20.11■□□□□ 0.81
CTCF-203ENST00000566078 C10orf25Q5T742 122 aa20.11■□□□□ 0.81
CTCF-203ENST00000566078 C2orf48Q96LS8 159 aa20.11■□□□□ 0.81
CTCF-203ENST00000566078 CAMK2N2Q96S95 79 aa20.11■□□□□ 0.81
CTCF-203ENST00000566078 TIMM17BO60830 172 aa20.1■□□□□ 0.81
CTCF-203ENST00000566078 HSD52Q0P140 79 aa20.1■□□□□ 0.81
CTCF-203ENST00000566078 HIST1H4GQ99525 98 aa20.1■□□□□ 0.81
CTCF-203ENST00000566078 SPANXB1Q9NS25 103 aaPredicted RBP20.1■□□□□ 0.81
CTCF-203ENST00000566078 A0A0U1RRA0 63 aa20.09■□□□□ 0.81
CTCF-203ENST00000566078 CIRBPQ14011 172 aaKnown RBP20.09■□□□□ 0.81
CTCF-203ENST00000566078 SMIM13P0DJ93 91 aa20.09■□□□□ 0.81
CTCF-203ENST00000566078 SRSF9Q13242 221 aaKnown RBP eCLIP20.08■□□□□ 0.8
CTCF-203ENST00000566078 ADAMTSL4-AS1Q5T5F5 129 aa20.08■□□□□ 0.8
CTCF-203ENST00000566078 ERG28Q9UKR5 140 aa20.08■□□□□ 0.8
CTCF-203ENST00000566078 DNAH2Q9P225 4427 aa20.07■□□□□ 0.8
CTCF-203ENST00000566078 HYDINQ4G0P3 5121 aa20.06■□□□□ 0.8
CTCF-203ENST00000566078 C1orf134Q5TEV5 83 aa20.05■□□□□ 0.8
CTCF-203ENST00000566078 F8WDY8 70 aa20.05■□□□□ 0.8
CTCF-203ENST00000566078 PFN2P35080 140 aa20.05■□□□□ 0.8
CTCF-203ENST00000566078 TAL2Q16559 108 aa20.05■□□□□ 0.8
CTCF-203ENST00000566078 Q6ZRU5 148 aa20.05■□□□□ 0.8
CTCF-203ENST00000566078 DAND5Q8N907 189 aa20.05■□□□□ 0.8
CTCF-203ENST00000566078 HINT1P49773 126 aaPredicted RBP20.04■□□□□ 0.8
CTCF-203ENST00000566078 C9orf116Q5BN46 136 aaPredicted RBP20.04■□□□□ 0.8
CTCF-203ENST00000566078 SPANXDQ9BXN6 97 aa20.04■□□□□ 0.8
CTCF-203ENST00000566078 SPANXCQ9NY87 97 aa20.04■□□□□ 0.8
CTCF-203ENST00000566078 C6orf48Q9UBA6 75 aa20.04■□□□□ 0.8
CTCF-203ENST00000566078 LINC00158P58513 81 aa20.03■□□□□ 0.8
CTCF-203ENST00000566078 LRCOL1A6NCL2 159 aa20.02■□□□□ 0.79
CTCF-203ENST00000566078 GCSHP23434 173 aa20.02■□□□□ 0.79
CTCF-203ENST00000566078 SYCNQ0VAF6 134 aa20.02■□□□□ 0.79
CTCF-203ENST00000566078 TRBV30A0A0K0K1B3 111 aa20.01■□□□□ 0.79
CTCF-203ENST00000566078 C14orf177Q52M58 125 aa20■□□□□ 0.79
CTCF-203ENST00000566078 CEND1Q8N111 149 aa20■□□□□ 0.79
CTCF-203ENST00000566078 NPC2P61916 151 aa19.99■□□□□ 0.79
CTCF-203ENST00000566078 M0R143 59 aa19.98■□□□□ 0.79
CTCF-203ENST00000566078 Q6ZVH6 145 aa19.98■□□□□ 0.79
CTCF-203ENST00000566078 MIR7-3HGQ8N6C7 128 aa19.98■□□□□ 0.79
CTCF-203ENST00000566078 CARD19Q96LW7 228 aa19.98■□□□□ 0.79
CTCF-203ENST00000566078 FRAS1Q86XX4 4008 aa19.98■□□□□ 0.79
CTCF-203ENST00000566078 SACSQ9NZJ4 4579 aa19.98■□□□□ 0.79
CTCF-203ENST00000566078 LCE6AA0A183 80 aa19.98■□□□□ 0.79
CTCF-203ENST00000566078 SLPIP03973 132 aa19.98■□□□□ 0.79
CTCF-203ENST00000566078 COX17Q14061 63 aa19.98■□□□□ 0.79
CTCF-203ENST00000566078 BATFQ16520 125 aa19.98■□□□□ 0.79
CTCF-203ENST00000566078 BVES-AS1Q5T3Y7 98 aa19.98■□□□□ 0.79
CTCF-203ENST00000566078 MUSTN1Q8IVN3 82 aa19.95■□□□□ 0.78
CTCF-203ENST00000566078 SNHG12Q9BXW3 62 aa19.94■□□□□ 0.78
CTCF-203ENST00000566078 EREGO14944 169 aa19.94■□□□□ 0.78
CTCF-203ENST00000566078 FXYD2P54710 66 aa19.94■□□□□ 0.78
CTCF-203ENST00000566078 LINC00308Q8TCZ7 52 aa19.92■□□□□ 0.78
CTCF-203ENST00000566078 IGLV2-33A0A075B6J2 118 aaPredicted RBP19.91■□□□□ 0.78
CTCF-203ENST00000566078 IFITM1P13164 125 aa19.91■□□□□ 0.78
CTCF-203ENST00000566078 A0A087WTM6 91 aa19.91■□□□□ 0.78
CTCF-203ENST00000566078 PTTG1IPP53801 180 aa19.91■□□□□ 0.78
CTCF-203ENST00000566078 EIF4EBP3O60516 100 aaPredicted RBP19.9■□□□□ 0.78
CTCF-203ENST00000566078 SOSTDC1Q6X4U4 206 aa19.89■□□□□ 0.77
CTCF-203ENST00000566078 DNAH17Q9UFH2 4485 aa19.88■□□□□ 0.77
CTCF-203ENST00000566078 CNBPP62633 177 aaKnown RBP19.88■□□□□ 0.77
CTCF-203ENST00000566078 RNF151Q2KHN1 245 aa19.88■□□□□ 0.77
CTCF-203ENST00000566078 Q8N814 137 aa19.88■□□□□ 0.77
CTCF-203ENST00000566078 COPS9Q8WXC6 57 aa19.88■□□□□ 0.77
CTCF-203ENST00000566078 RPL24P83731 157 aaKnown RBP19.87■□□□□ 0.77
CTCF-203ENST00000566078 TRAV16A0A0A6YYK6 109 aaPredicted RBP19.85■□□□□ 0.77
CTCF-203ENST00000566078 TMEM238LA0A1B0GVL6 79 aa19.84■□□□□ 0.77
CTCF-203ENST00000566078 A6NJY4 79 aa19.84■□□□□ 0.77
CTCF-203ENST00000566078 NDUFC2-KCTD14E9PQ53 114 aa19.84■□□□□ 0.77
CTCF-203ENST00000566078 SND1-IT1Q9HBX3 110 aa19.84■□□□□ 0.77
CTCF-203ENST00000566078 A4D1N5 150 aa19.84■□□□□ 0.77
CTCF-203ENST00000566078 RTL8CO15255 209 aa19.84■□□□□ 0.77
CTCF-203ENST00000566078 PPDPFQ9H3Y8 114 aa19.81■□□□□ 0.76
CTCF-203ENST00000566078 NHP2Q9NX24 153 aaKnown RBP19.81■□□□□ 0.76
CTCF-203ENST00000566078 HECTD4Q9Y4D8 3996 aa19.81■□□□□ 0.76
CTCF-203ENST00000566078 A6NDN8 102 aa19.8■□□□□ 0.76
CTCF-203ENST00000566078 RPL18AQ02543 176 aaKnown RBP19.8■□□□□ 0.76
CTCF-203ENST00000566078 TNP2Q05952 138 aa19.8■□□□□ 0.76
CTCF-203ENST00000566078 Q6ZRP5 223 aa19.8■□□□□ 0.76
CTCF-203ENST00000566078 TLX1NBP0CAT3 122 aa19.79■□□□□ 0.76
CTCF-203ENST00000566078 GAGE2EQ4V326 116 aa19.77■□□□□ 0.76
CTCF-203ENST00000566078 GAGE2DQ9UEU5 116 aa19.77■□□□□ 0.76
CTCF-203ENST00000566078 XAGE1AQ9HD64 81 aa19.76■□□□□ 0.75
CTCF-203ENST00000566078 LOC107984156A0A0G2JMH3 177 aa19.76■□□□□ 0.75
CTCF-203ENST00000566078 LOC107984640A0A0U1RRK4 108 aa19.76■□□□□ 0.75
CTCF-203ENST00000566078 K7ERJ3 54 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms