RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 PLEKHB2Q96CS7 222 aa10.78□□□□□ -0.68
VPS4A-202ENST00000562754 CAMK2N2Q96S95 79 aa10.78□□□□□ -0.68
VPS4A-202ENST00000562754 SYCNQ0VAF6 134 aa10.77□□□□□ -0.69
VPS4A-202ENST00000562754 UNQ6190/PRO20217Q6UXQ8 127 aa10.77□□□□□ -0.69
VPS4A-202ENST00000562754 J3QQQ9 107 aa10.76□□□□□ -0.69
VPS4A-202ENST00000562754 NDUFA1O15239 70 aa10.76□□□□□ -0.69
VPS4A-202ENST00000562754 CXCL5P42830 114 aa10.76□□□□□ -0.69
VPS4A-202ENST00000562754 CARD19Q96LW7 228 aa10.76□□□□□ -0.69
VPS4A-202ENST00000562754 F8WDY8 70 aa10.75□□□□□ -0.69
VPS4A-202ENST00000562754 CKS1BP61024 79 aa10.75□□□□□ -0.69
VPS4A-202ENST00000562754 ZNF625Q96I27 306 aaPredicted RBP10.75□□□□□ -0.69
VPS4A-202ENST00000562754 C6orf48Q9UBA6 75 aa10.75□□□□□ -0.69
VPS4A-202ENST00000562754 PKD1P98161 4303 aa10.74□□□□□ -0.69
VPS4A-202ENST00000562754 HSBP1L1C9JCN9 74 aa10.74□□□□□ -0.69
VPS4A-202ENST00000562754 LGALS3P17931 250 aaKnown RBP10.74□□□□□ -0.69
VPS4A-202ENST00000562754 TTTY13Q9BZ97 58 aa10.74□□□□□ -0.69
VPS4A-202ENST00000562754 NDUFA12Q9UI09 145 aa10.74□□□□□ -0.69
VPS4A-202ENST00000562754 IGLV5-52A0A0A0MRZ9 124 aa10.73□□□□□ -0.69
VPS4A-202ENST00000562754 NMUP48645 174 aa10.73□□□□□ -0.69
VPS4A-202ENST00000562754 LINC01620Q4KN68 170 aa10.72□□□□□ -0.69
VPS4A-202ENST00000562754 VAMP8Q9BV40 100 aa10.72□□□□□ -0.69
VPS4A-202ENST00000562754 PAM16Q9Y3D7 125 aa10.72□□□□□ -0.69
VPS4A-202ENST00000562754 HECTD4Q9Y4D8 3996 aa10.71□□□□□ -0.69
VPS4A-202ENST00000562754 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.71□□□□□ -0.69
VPS4A-202ENST00000562754 TRBV30A0A0K0K1B3 111 aa10.71□□□□□ -0.69
VPS4A-202ENST00000562754 C9orf116Q5BN46 136 aaPredicted RBP10.71□□□□□ -0.69
VPS4A-202ENST00000562754 PCP2Q8IVA1 136 aa10.71□□□□□ -0.69
VPS4A-202ENST00000562754 C9orf163Q8N9P6 203 aa10.71□□□□□ -0.69
VPS4A-202ENST00000562754 SMIM6P0DI80 62 aa10.7□□□□□ -0.7
VPS4A-202ENST00000562754 RNF151Q2KHN1 245 aa10.7□□□□□ -0.7
VPS4A-202ENST00000562754 SPATA45Q537H7 98 aa10.7□□□□□ -0.7
VPS4A-202ENST00000562754 MYMXA0A1B0GTQ4 84 aa10.69□□□□□ -0.7
VPS4A-202ENST00000562754 SFTA2Q6UW10 78 aa10.69□□□□□ -0.7
VPS4A-202ENST00000562754 PGPEP1Q9NXJ5 209 aa10.69□□□□□ -0.7
VPS4A-202ENST00000562754 ZNF815PA8K554 130 aa10.68□□□□□ -0.7
VPS4A-202ENST00000562754 TP73-AS1Q9UF72 201 aa10.68□□□□□ -0.7
VPS4A-202ENST00000562754 HERV-K104P63124 156 aa10.67□□□□□ -0.7
VPS4A-202ENST00000562754 ERG28Q9UKR5 140 aa10.66□□□□□ -0.7
VPS4A-202ENST00000562754 DNAH5Q8TE73 4624 aa10.66□□□□□ -0.7
VPS4A-202ENST00000562754 A0A0J9YXY3 114 aa10.65□□□□□ -0.7
VPS4A-202ENST00000562754 SDIM1Q6ZPB5 146 aa10.65□□□□□ -0.7
VPS4A-202ENST00000562754 LOC107984640A0A0U1RRK4 108 aa10.64□□□□□ -0.71
VPS4A-202ENST00000562754 TLX1NBP0CAT3 122 aa10.64□□□□□ -0.71
VPS4A-202ENST00000562754 COX8AP10176 69 aa10.64□□□□□ -0.71
VPS4A-202ENST00000562754 GCSHP23434 173 aa10.64□□□□□ -0.71
VPS4A-202ENST00000562754 KRTAP10-1P60331 282 aa10.64□□□□□ -0.71
VPS4A-202ENST00000562754 NDUFC2-KCTD14E9PQ53 114 aa10.63□□□□□ -0.71
VPS4A-202ENST00000562754 SMIM13P0DJ93 91 aa10.63□□□□□ -0.71
VPS4A-202ENST00000562754 PFN2P35080 140 aa10.63□□□□□ -0.71
VPS4A-202ENST00000562754 MEIG1Q5JSS6 88 aa10.63□□□□□ -0.71
VPS4A-202ENST00000562754 Q6ZRP5 223 aa10.63□□□□□ -0.71
VPS4A-202ENST00000562754 C14orf144Q96I85 54 aa10.63□□□□□ -0.71
VPS4A-202ENST00000562754 A0A096LNI7 61 aa10.62□□□□□ -0.71
VPS4A-202ENST00000562754 A0A0U1RRA0 63 aa10.62□□□□□ -0.71
VPS4A-202ENST00000562754 S100A12P80511 92 aa10.62□□□□□ -0.71
VPS4A-202ENST00000562754 RPL18AQ02543 176 aaKnown RBP10.62□□□□□ -0.71
VPS4A-202ENST00000562754 BOD1L2Q8IYS8 172 aa10.62□□□□□ -0.71
VPS4A-202ENST00000562754 PKHD1P08F94 4074 aa10.62□□□□□ -0.71
VPS4A-202ENST00000562754 C16orf90A8MZG2 172 aa10.61□□□□□ -0.71
VPS4A-202ENST00000562754 CHTF8P0CG12 524 aa10.61□□□□□ -0.71
VPS4A-202ENST00000562754 LITAFQ99732 161 aa10.61□□□□□ -0.71
VPS4A-202ENST00000562754 PANO1I0J062 215 aa10.6□□□□□ -0.71
VPS4A-202ENST00000562754 PTTG1IPP53801 180 aa10.6□□□□□ -0.71
VPS4A-202ENST00000562754 LINC00158P58513 81 aa10.6□□□□□ -0.71
VPS4A-202ENST00000562754 GAGE2BQ13066 116 aa10.6□□□□□ -0.71
VPS4A-202ENST00000562754 COX17Q14061 63 aa10.6□□□□□ -0.71
VPS4A-202ENST00000562754 IGKV2-24A0A0C4DH68 120 aa10.59□□□□□ -0.71
VPS4A-202ENST00000562754 DLEU1O43261 78 aa10.59□□□□□ -0.71
VPS4A-202ENST00000562754 GAGE2EQ4V326 116 aa10.59□□□□□ -0.71
VPS4A-202ENST00000562754 ADAMTSL4-AS1Q5T5F5 129 aa10.59□□□□□ -0.71
VPS4A-202ENST00000562754 C12orf57Q99622 126 aa10.59□□□□□ -0.71
VPS4A-202ENST00000562754 GAGE2DQ9UEU5 116 aa10.59□□□□□ -0.71
VPS4A-202ENST00000562754 PKIGQ9Y2B9 76 aa10.59□□□□□ -0.71
VPS4A-202ENST00000562754 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.59□□□□□ -0.71
VPS4A-202ENST00000562754 TIMM17BO60830 172 aa10.58□□□□□ -0.72
VPS4A-202ENST00000562754 SLC25A34Q6PIV7 304 aa10.58□□□□□ -0.72
VPS4A-202ENST00000562754 SCGB1D4Q6XE38 83 aa10.58□□□□□ -0.72
VPS4A-202ENST00000562754 MIR7-3HGQ8N6C7 128 aa10.58□□□□□ -0.72
VPS4A-202ENST00000562754 DAND5Q8N907 189 aa10.58□□□□□ -0.72
VPS4A-202ENST00000562754 DYNC1H1Q14204 4646 aaKnown RBP10.57□□□□□ -0.72
VPS4A-202ENST00000562754 LINC00587B1AMM8 73 aa10.57□□□□□ -0.72
VPS4A-202ENST00000562754 C9orf129Q5T035 196 aaKnown RBP10.57□□□□□ -0.72
VPS4A-202ENST00000562754 SND1-IT1Q9HBX3 110 aa10.57□□□□□ -0.72
VPS4A-202ENST00000562754 XAGE1AQ9HD64 81 aa10.57□□□□□ -0.72
VPS4A-202ENST00000562754 FAM30AQ9NZY2 134 aa10.57□□□□□ -0.72
VPS4A-202ENST00000562754 CIRBPQ14011 172 aaKnown RBP10.56□□□□□ -0.72
VPS4A-202ENST00000562754 Q6ZSA8 131 aa10.56□□□□□ -0.72
VPS4A-202ENST00000562754 LINC00518Q8N0U6 118 aa10.56□□□□□ -0.72
VPS4A-202ENST00000562754 SPACA4Q8TDM5 124 aa10.56□□□□□ -0.72
VPS4A-202ENST00000562754 C2orf91Q6ZV80 131 aa10.55□□□□□ -0.72
VPS4A-202ENST00000562754 DNAH8Q96JB1 4490 aa10.55□□□□□ -0.72
VPS4A-202ENST00000562754 PRO1933Q9H354 126 aa10.54□□□□□ -0.72
VPS4A-202ENST00000562754 LRP1BQ9NZR2 4599 aa10.53□□□□□ -0.72
VPS4A-202ENST00000562754 TMEM238C9JI98 176 aa10.53□□□□□ -0.72
VPS4A-202ENST00000562754 EIF4EBP3O60516 100 aaPredicted RBP10.53□□□□□ -0.72
VPS4A-202ENST00000562754 SOSTDC1Q6X4U4 206 aa10.53□□□□□ -0.72
VPS4A-202ENST00000562754 SPANXDQ9BXN6 97 aa10.53□□□□□ -0.72
VPS4A-202ENST00000562754 SPANXCQ9NY87 97 aa10.53□□□□□ -0.72
VPS4A-202ENST00000562754 FAM168BA1KXE4 195 aa10.51□□□□□ -0.73
VPS4A-202ENST00000562754 NPC2P61916 151 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms