RNA–Protein interactions for RNA: ENST00000562540.1

DENND4A-205, Transcript of DENN domain containing 4A, humanhuman

TSL 2

Gene DENND4A, Length 629 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DENND4A-205ENST00000562540 APLNQ9ULZ1 77 aa-0.92□□□□□ -2.56
DENND4A-205ENST00000562540 COL12A1Q99715 3063 aa-0.92□□□□□ -2.56
DENND4A-205ENST00000562540 LAMA2P24043 3122 aaKnown RBP-0.92□□□□□ -2.56
DENND4A-205ENST00000562540 MAGI1Q96QZ7 1491 aaPredicted RBP-0.92□□□□□ -2.56
DENND4A-205ENST00000562540 MBD5Q9P267 1494 aa-0.92□□□□□ -2.56
DENND4A-205ENST00000562540 KTN1Q86UP2 1357 aaKnown RBP-0.93□□□□□ -2.56
DENND4A-205ENST00000562540 BIRC6Q9NR09 4857 aa-0.93□□□□□ -2.56
DENND4A-205ENST00000562540 SPRR2AP35326 72 aa-0.93□□□□□ -2.56
DENND4A-205ENST00000562540 PP6455Q8WZ26 134 aa-0.93□□□□□ -2.56
DENND4A-205ENST00000562540 SMG6Q86US8 1419 aaKnown RBP-0.93□□□□□ -2.56
DENND4A-205ENST00000562540 SPG11Q96JI7 2443 aa-0.94□□□□□ -2.56
DENND4A-205ENST00000562540 CPSF4LA6NMK7 179 aaKnown RBP-0.94□□□□□ -2.56
DENND4A-205ENST00000562540 C9orf153Q5TBE3 101 aa-0.94□□□□□ -2.56
DENND4A-205ENST00000562540 C1orf54Q8WWF1 131 aa-0.94□□□□□ -2.56
DENND4A-205ENST00000562540 FAM107BQ9H098 131 aa-0.94□□□□□ -2.56
DENND4A-205ENST00000562540 DPH3P1Q9H4G8 78 aa-0.94□□□□□ -2.56
DENND4A-205ENST00000562540 MANBALQ9NQG1 85 aa-0.94□□□□□ -2.56
DENND4A-205ENST00000562540 ROBO1Q9Y6N7 1651 aa-0.94□□□□□ -2.56
DENND4A-205ENST00000562540 TACC2O95359 2948 aa-0.95□□□□□ -2.56
DENND4A-205ENST00000562540 CELSR3Q9NYQ7 3312 aa-0.95□□□□□ -2.56
DENND4A-205ENST00000562540 A0A1B0GWA3 101 aa-0.95□□□□□ -2.56
DENND4A-205ENST00000562540 FAM24AA6NFZ4 105 aa-0.95□□□□□ -2.56
DENND4A-205ENST00000562540 F6UZH7 168 aa-0.95□□□□□ -2.56
DENND4A-205ENST00000562540 S100A12P80511 92 aa-0.95□□□□□ -2.56
DENND4A-205ENST00000562540 USP9XQ93008 2570 aaPredicted RBP-0.95□□□□□ -2.56
DENND4A-205ENST00000562540 HMGXB3Q12766 1538 aa-0.95□□□□□ -2.56
DENND4A-205ENST00000562540 TET3O43151 1660 aa-0.96□□□□□ -2.56
DENND4A-205ENST00000562540 TRAPPC2P0DI81 140 aa-0.96□□□□□ -2.56
DENND4A-205ENST00000562540 TRAPPC2BP0DI82 140 aa-0.96□□□□□ -2.56
DENND4A-205ENST00000562540 SPRR2EP22531 72 aa-0.96□□□□□ -2.56
DENND4A-205ENST00000562540 SFTA2Q6UW10 78 aa-0.96□□□□□ -2.56
DENND4A-205ENST00000562540 LCN9Q8WX39 176 aa-0.96□□□□□ -2.56
DENND4A-205ENST00000562540 FMN2Q9NZ56 1722 aa-0.96□□□□□ -2.56
DENND4A-205ENST00000562540 ARHGEF5Q12774 1597 aa-0.96□□□□□ -2.56
DENND4A-205ENST00000562540 SNAPC5O75971 98 aa-0.97□□□□□ -2.56
DENND4A-205ENST00000562540 ATP5EP56381 51 aaPredicted RBP-0.97□□□□□ -2.56
DENND4A-205ENST00000562540 SEC11AP67812 179 aa-0.97□□□□□ -2.56
DENND4A-205ENST00000562540 Q0VG73 95 aa-0.97□□□□□ -2.56
DENND4A-205ENST00000562540 DEFB135Q30KP9 77 aa-0.97□□□□□ -2.56
DENND4A-205ENST00000562540 NIPBLQ6KC79 2804 aaeCLIP-0.97□□□□□ -2.56
DENND4A-205ENST00000562540 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.97□□□□□ -2.56
DENND4A-205ENST00000562540 KIAA0556O60303 1618 aa-0.97□□□□□ -2.57
DENND4A-205ENST00000562540 PDCD11Q14690 1871 aaKnown RBP-0.98□□□□□ -2.57
DENND4A-205ENST00000562540 COX6CP09669 75 aa-0.98□□□□□ -2.57
DENND4A-205ENST00000562540 NBPF19A0A087WUL8 3843 aa-0.98□□□□□ -2.57
DENND4A-205ENST00000562540 DNAH6Q9C0G6 4158 aa-0.98□□□□□ -2.57
DENND4A-205ENST00000562540 C1orf167Q5SNV9 1468 aa-0.99□□□□□ -2.57
DENND4A-205ENST00000562540 HMGN1P05114 100 aa-0.99□□□□□ -2.57
DENND4A-205ENST00000562540 KRTAP6-2Q3LI66 62 aa-0.99□□□□□ -2.57
DENND4A-205ENST00000562540 C12orf57Q99622 126 aa-0.99□□□□□ -2.57
DENND4A-205ENST00000562540 PRO1854Q9UHT4 67 aa-0.99□□□□□ -2.57
DENND4A-205ENST00000562540 AKAP13Q12802 2813 aa-0.99□□□□□ -2.57
DENND4A-205ENST00000562540 A2ML1A8K2U0 1454 aa-0.99□□□□□ -2.57
DENND4A-205ENST00000562540 PRRC2CQ9Y520 2896 aaKnown RBP-1□□□□□ -2.57
DENND4A-205ENST00000562540 FAM223BA6NKX1 122 aa-1□□□□□ -2.57
DENND4A-205ENST00000562540 CRIPTQ9P021 101 aa-1□□□□□ -2.57
DENND4A-205ENST00000562540 MUC17Q685J3 4493 aa-1□□□□□ -2.57
DENND4A-205ENST00000562540 SHROOM2Q13796 1616 aa-1□□□□□ -2.57
DENND4A-205ENST00000562540 NAP1L6A6NFF2 107 aa-1.01□□□□□ -2.57
DENND4A-205ENST00000562540 UBE2D3P61077 147 aa-1.01□□□□□ -2.57
DENND4A-205ENST00000562540 UBE2D2P62837 147 aa-1.01□□□□□ -2.57
DENND4A-205ENST00000562540 LINC00846Q9NV44 126 aa-1.01□□□□□ -2.57
DENND4A-205ENST00000562540 ROCK2O75116 1388 aaKnown RBP-1.01□□□□□ -2.57
DENND4A-205ENST00000562540 EHBP1L1Q8N3D4 1523 aa-1.01□□□□□ -2.57
DENND4A-205ENST00000562540 A0A0G2JMZ2 1700 aa-1.01□□□□□ -2.57
DENND4A-205ENST00000562540 PKHD1L1Q86WI1 4243 aa-1.01□□□□□ -2.57
DENND4A-205ENST00000562540 ANKRD36A6QL64 1941 aa-1.02□□□□□ -2.57
DENND4A-205ENST00000562540 ADGRL2O95490 1459 aa-1.02□□□□□ -2.57
DENND4A-205ENST00000562540 SAA2P0DJI9 122 aaPredicted RBP-1.02□□□□□ -2.57
DENND4A-205ENST00000562540 SVBPQ8N300 66 aa-1.02□□□□□ -2.57
DENND4A-205ENST00000562540 SCAPERQ9BY12 1400 aa-1.02□□□□□ -2.57
DENND4A-205ENST00000562540 QRICH2Q9H0J4 1663 aa-1.02□□□□□ -2.57
DENND4A-205ENST00000562540 IER3IP1Q9Y5U9 82 aa-1.02□□□□□ -2.57
DENND4A-205ENST00000562540 TNRC18O15417 2968 aaPredicted RBP-1.02□□□□□ -2.57
DENND4A-205ENST00000562540 PAPPA2Q9BXP8 1791 aa-1.03□□□□□ -2.57
DENND4A-205ENST00000562540 A0A1B0GU69 56 aa-1.03□□□□□ -2.57
DENND4A-205ENST00000562540 WDR87Q6ZQQ6 2873 aa-1.03□□□□□ -2.57
DENND4A-205ENST00000562540 CCDC141Q6ZP82 1450 aa-1.04□□□□□ -2.58
DENND4A-205ENST00000562540 DNAH3Q8TD57 4116 aa-1.04□□□□□ -2.58
DENND4A-205ENST00000562540 I3L3M4 83 aa-1.04□□□□□ -2.58
DENND4A-205ENST00000562540 H1FX-AS1Q4G0G2 97 aa-1.04□□□□□ -2.58
DENND4A-205ENST00000562540 XRN1Q8IZH2 1706 aaKnown RBP-1.04□□□□□ -2.58
DENND4A-205ENST00000562540 PDE4DIPQ5VU43 2346 aa-1.05□□□□□ -2.58
DENND4A-205ENST00000562540 LAMA1P25391 3075 aa-1.05□□□□□ -2.58
DENND4A-205ENST00000562540 ANKRD11Q6UB99 2663 aaPredicted RBP-1.05□□□□□ -2.58
DENND4A-205ENST00000562540 PLEKHH2Q8IVE3 1493 aa-1.05□□□□□ -2.58
DENND4A-205ENST00000562540 SCN7AQ01118 1682 aa-1.06□□□□□ -2.58
DENND4A-205ENST00000562540 RPL13AP3Q6NVV1 102 aa-1.06□□□□□ -2.58
DENND4A-205ENST00000562540 C9orf62Q8N4C0 152 aa-1.06□□□□□ -2.58
DENND4A-205ENST00000562540 TEX15Q9BXT5 2789 aa-1.06□□□□□ -2.58
DENND4A-205ENST00000562540 CRYM-AS1A6NIL9 109 aa-1.07□□□□□ -2.58
DENND4A-205ENST00000562540 VAMP8Q9BV40 100 aa-1.07□□□□□ -2.58
DENND4A-205ENST00000562540 NUP188Q5SRE5 1749 aa-1.07□□□□□ -2.58
DENND4A-205ENST00000562540 REV3LO60673 3130 aa-1.07□□□□□ -2.58
DENND4A-205ENST00000562540 GNG4P50150 75 aa-1.08□□□□□ -2.58
DENND4A-205ENST00000562540 KRTDAPP60985 99 aa-1.08□□□□□ -2.58
DENND4A-205ENST00000562540 PPP3R1P63098 170 aa-1.08□□□□□ -2.58
DENND4A-205ENST00000562540 MYOM2P54296 1465 aa-1.08□□□□□ -2.58
DENND4A-205ENST00000562540 NLRP1Q9C000 1473 aa-1.08□□□□□ -2.58
DENND4A-205ENST00000562540 DNAH2Q9P225 4427 aa-1.08□□□□□ -2.58
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms