RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 MIR7-3HGQ8N6C7 128 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 ZFAND2AQ8N6M9 145 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 CNEP1R1Q8N9A8 125 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 C20orf203Q8NBC4 194 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 B9D2Q9BPU9 175 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 KLK9Q9UKQ9 250 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 LINC01558Q9Y6Z2 57 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 CABIN1Q9Y6J0 2220 aa2.18□□□□□ -2.06
VPS35-203ENST00000562420 TNRC6BQ9UPQ9 1833 aaKnown RBP2.17□□□□□ -2.06
VPS35-203ENST00000562420 TRAV10A0A0B4J240 114 aa2.17□□□□□ -2.06
VPS35-203ENST00000562420 TRAV12-3A0A0B4J271 114 aa2.17□□□□□ -2.06
VPS35-203ENST00000562420 PANO1I0J062 215 aa2.17□□□□□ -2.06
VPS35-203ENST00000562420 ZNF861PO60384 105 aa2.17□□□□□ -2.06
VPS35-203ENST00000562420 PRB2P02812 416 aaPredicted RBP2.17□□□□□ -2.06
VPS35-203ENST00000562420 HAMPP81172 84 aa2.17□□□□□ -2.06
VPS35-203ENST00000562420 MOBPQ13875 183 aa2.17□□□□□ -2.06
VPS35-203ENST00000562420 SPINK9Q5DT21 86 aa2.17□□□□□ -2.06
VPS35-203ENST00000562420 IGFL3Q6UXB1 125 aa2.17□□□□□ -2.06
VPS35-203ENST00000562420 SND1-IT1Q9HBX3 110 aa2.17□□□□□ -2.06
VPS35-203ENST00000562420 BRWD1Q9NSI6 2320 aa2.17□□□□□ -2.06
VPS35-203ENST00000562420 INTS1Q8N201 2190 aaKnown RBP2.16□□□□□ -2.06
VPS35-203ENST00000562420 MED12Q93074 2177 aa2.16□□□□□ -2.06
VPS35-203ENST00000562420 TNRC18O15417 2968 aaPredicted RBP2.16□□□□□ -2.06
VPS35-203ENST00000562420 NTM-AS1Q6ZSK4 140 aa2.16□□□□□ -2.06
VPS35-203ENST00000562420 KRTAP5-5Q701N2 237 aaPredicted RBP2.16□□□□□ -2.06
VPS35-203ENST00000562420 Q8N814 137 aa2.16□□□□□ -2.06
VPS35-203ENST00000562420 C7orf33Q8WU49 177 aa2.16□□□□□ -2.06
VPS35-203ENST00000562420 C4orf3Q8WVX3 66 aa2.16□□□□□ -2.06
VPS35-203ENST00000562420 LINC00208Q96KT6 92 aa2.16□□□□□ -2.06
VPS35-203ENST00000562420 FGF23Q9GZV9 251 aaPredicted RBP2.16□□□□□ -2.06
VPS35-203ENST00000562420 S4R3C0 116 aa2.16□□□□□ -2.06
VPS35-203ENST00000562420 CUL9Q8IWT3 2517 aa2.16□□□□□ -2.06
VPS35-203ENST00000562420 TRIOBPQ9H2D6 2365 aa2.15□□□□□ -2.06
VPS35-203ENST00000562420 A0A087WSZ3 146 aa2.15□□□□□ -2.07
VPS35-203ENST00000562420 TRBV10-1A0A0K0K1A3 114 aa2.15□□□□□ -2.07
VPS35-203ENST00000562420 ETDCA0A1B0GVM5 59 aa2.15□□□□□ -2.07
VPS35-203ENST00000562420 KLK9Q2XQG4 91 aa2.15□□□□□ -2.07
VPS35-203ENST00000562420 KCNQ1DNQ9H478 68 aa2.15□□□□□ -2.07
VPS35-203ENST00000562420 ZNRD1Q9P1U0 126 aa2.15□□□□□ -2.07
VPS35-203ENST00000562420 DSCAMO60469 2012 aa2.15□□□□□ -2.07
VPS35-203ENST00000562420 IGLV10-54A0A075B6I4 117 aa2.14□□□□□ -2.07
VPS35-203ENST00000562420 TRGV2A0A075B6R0 118 aa2.14□□□□□ -2.07
VPS35-203ENST00000562420 K7EIM0 57 aa2.14□□□□□ -2.07
VPS35-203ENST00000562420 NCR3O14931 201 aa2.14□□□□□ -2.07
VPS35-203ENST00000562420 LECT2O14960 151 aa2.14□□□□□ -2.07
VPS35-203ENST00000562420 MRPL33O75394 65 aaKnown RBP2.14□□□□□ -2.07
VPS35-203ENST00000562420 IGKV1-17P01599 117 aa2.14□□□□□ -2.07
VPS35-203ENST00000562420 WT1-ASQ06250 92 aa2.14□□□□□ -2.07
VPS35-203ENST00000562420 RNASE13Q5GAN3 156 aaKnown RBP2.14□□□□□ -2.07
VPS35-203ENST00000562420 KPRPQ5T749 579 aaPredicted RBP2.14□□□□□ -2.07
VPS35-203ENST00000562420 DEFB123Q8N688 67 aa2.14□□□□□ -2.07
VPS35-203ENST00000562420 SMIM11BQ8TCY0 68 aa2.14□□□□□ -2.07
VPS35-203ENST00000562420 PRR15LQ9BU68 103 aa2.14□□□□□ -2.07
VPS35-203ENST00000562420 C8orf17Q9NRJ1 99 aa2.14□□□□□ -2.07
VPS35-203ENST00000562420 PLAC8Q9NZF1 115 aa2.14□□□□□ -2.07
VPS35-203ENST00000562420 CACNA1EQ15878 2313 aa2.14□□□□□ -2.07
VPS35-203ENST00000562420 UNC80Q8N2C7 3258 aa2.14□□□□□ -2.07
VPS35-203ENST00000562420 NCOR1O75376 2440 aa2.13□□□□□ -2.07
VPS35-203ENST00000562420 VCANP13611 3396 aa2.13□□□□□ -2.07
VPS35-203ENST00000562420 SPAG17Q6Q759 2223 aa2.13□□□□□ -2.07
VPS35-203ENST00000562420 TRBV6-4A0A1B0GX49 114 aa2.13□□□□□ -2.07
VPS35-203ENST00000562420 IGKV2-29A2NJV5 120 aaPredicted RBP2.13□□□□□ -2.07
VPS35-203ENST00000562420 I3L2K1 104 aa2.13□□□□□ -2.07
VPS35-203ENST00000562420 CCL3P10147 92 aa2.13□□□□□ -2.07
VPS35-203ENST00000562420 COX7BP24311 80 aa2.13□□□□□ -2.07
VPS35-203ENST00000562420 LINC00315P59091 139 aa2.13□□□□□ -2.07
VPS35-203ENST00000562420 ROMO1P60602 79 aa2.13□□□□□ -2.07
VPS35-203ENST00000562420 REG3AQ06141 175 aa2.13□□□□□ -2.07
VPS35-203ENST00000562420 COX17Q14061 63 aa2.13□□□□□ -2.07
VPS35-203ENST00000562420 COX7B2Q8TF08 81 aa2.13□□□□□ -2.07
VPS35-203ENST00000562420 WFDC10AQ9H1F0 79 aa2.13□□□□□ -2.07
VPS35-203ENST00000562420 MUC3AQ02505 3323 aa2.13□□□□□ -2.07
VPS35-203ENST00000562420 USF3Q68DE3 2245 aa2.13□□□□□ -2.07
VPS35-203ENST00000562420 CACNA1DQ01668 2161 aa2.12□□□□□ -2.07
VPS35-203ENST00000562420 FREM1Q5H8C1 2179 aa2.12□□□□□ -2.07
VPS35-203ENST00000562420 ARFGEF3Q5TH69 2177 aa2.12□□□□□ -2.07
VPS35-203ENST00000562420 IGHV3-15A0A0B4J1V0 119 aa2.12□□□□□ -2.07
VPS35-203ENST00000562420 KRTAP4-16G5E9R7 235 aaPredicted RBP2.12□□□□□ -2.07
VPS35-203ENST00000562420 INSP01308 110 aa2.12□□□□□ -2.07
VPS35-203ENST00000562420 IGLV1-51P01701 117 aa2.12□□□□□ -2.07
VPS35-203ENST00000562420 IGHV3-53P01767 116 aa2.12□□□□□ -2.07
VPS35-203ENST00000562420 NNATQ16517 81 aa2.12□□□□□ -2.07
VPS35-203ENST00000562420 LUZP6Q538Z0 58 aa2.12□□□□□ -2.07
VPS35-203ENST00000562420 RPL39P5Q59GN2 51 aa2.12□□□□□ -2.07
VPS35-203ENST00000562420 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.12□□□□□ -2.07
VPS35-203ENST00000562420 Q8N9L7 120 aa2.12□□□□□ -2.07
VPS35-203ENST00000562420 WFDC9Q8NEX5 89 aa2.12□□□□□ -2.07
VPS35-203ENST00000562420 DNAH14Q0VDD8 3507 aa2.12□□□□□ -2.07
VPS35-203ENST00000562420 MYO15AQ9UKN7 3530 aa2.12□□□□□ -2.07
VPS35-203ENST00000562420 C5orf42Q9H799 3197 aa2.12□□□□□ -2.07
VPS35-203ENST00000562420 ALPK2Q86TB3 2170 aa2.12□□□□□ -2.07
VPS35-203ENST00000562420 A0A0C4DFX4 3053 aa2.11□□□□□ -2.07
VPS35-203ENST00000562420 UNC13CQ8NB66 2214 aa2.11□□□□□ -2.07
VPS35-203ENST00000562420 IGHV3-64A0A075B6Q5 118 aa2.11□□□□□ -2.07
VPS35-203ENST00000562420 IGHV3OR16-8A0A075B7F1 116 aa2.11□□□□□ -2.07
VPS35-203ENST00000562420 IGHV3-64DA0A0J9YX35 117 aa2.11□□□□□ -2.07
VPS35-203ENST00000562420 A6NDX4 124 aa2.11□□□□□ -2.07
VPS35-203ENST00000562420 M0QY20 66 aa2.11□□□□□ -2.07
VPS35-203ENST00000562420 NDUFA4O00483 81 aa2.11□□□□□ -2.07
VPS35-203ENST00000562420 SPAG11BQ08648 103 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms