RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PSMB2P49721 201 aa5.17□□□□□ -1.58
VPS39-204ENST00000561818 Q1RN00 199 aa5.17□□□□□ -1.58
VPS39-204ENST00000561818 LINC00308Q8TCZ7 52 aa5.17□□□□□ -1.58
VPS39-204ENST00000561818 CHCHD10Q8WYQ3 142 aaPredicted RBP5.17□□□□□ -1.58
VPS39-204ENST00000561818 B9D2Q9BPU9 175 aa5.17□□□□□ -1.58
VPS39-204ENST00000561818 TOMM7Q9P0U1 55 aa5.17□□□□□ -1.58
VPS39-204ENST00000561818 PKIGQ9Y2B9 76 aa5.17□□□□□ -1.58
VPS39-204ENST00000561818 GVQW2A0A096LPI5 108 aaPredicted RBP5.16□□□□□ -1.58
VPS39-204ENST00000561818 IGKV3OR2-268A0A0C4DH90 116 aa5.16□□□□□ -1.58
VPS39-204ENST00000561818 LOC107984156A0A0G2JMH3 177 aa5.16□□□□□ -1.58
VPS39-204ENST00000561818 NDUFC2O95298 119 aa5.16□□□□□ -1.58
VPS39-204ENST00000561818 TSPAN13O95857 204 aa5.16□□□□□ -1.58
VPS39-204ENST00000561818 DNAH10OSP0CZ25 163 aa5.16□□□□□ -1.58
VPS39-204ENST00000561818 SCGB1C2P0DMR2 95 aa5.16□□□□□ -1.58
VPS39-204ENST00000561818 ATXN8Q156A1 80 aa5.16□□□□□ -1.58
VPS39-204ENST00000561818 DEFB121Q5J5C9 76 aa5.16□□□□□ -1.58
VPS39-204ENST00000561818 ARL17AQ8IVW1 177 aa5.16□□□□□ -1.58
VPS39-204ENST00000561818 UPK3BQ9BT76 320 aa5.16□□□□□ -1.58
VPS39-204ENST00000561818 C1orf43Q9BWL3 253 aa5.16□□□□□ -1.58
VPS39-204ENST00000561818 COL6A5A8TX70 2615 aa5.16□□□□□ -1.58
VPS39-204ENST00000561818 STAB1Q9NY15 2570 aa5.15□□□□□ -1.58
VPS39-204ENST00000561818 LOC100996750A0A140TA64 210 aa5.15□□□□□ -1.59
VPS39-204ENST00000561818 K7EIL1 84 aa5.15□□□□□ -1.59
VPS39-204ENST00000561818 K7ERJ3 54 aa5.15□□□□□ -1.59
VPS39-204ENST00000561818 IGHV3-33P01772 117 aa5.15□□□□□ -1.59
VPS39-204ENST00000561818 LINC00158P58513 81 aa5.15□□□□□ -1.59
VPS39-204ENST00000561818 KRTAP21-3Q3LHN1 58 aa5.15□□□□□ -1.59
VPS39-204ENST00000561818 CARD19Q96LW7 228 aa5.15□□□□□ -1.59
VPS39-204ENST00000561818 KRTAP4-6Q9BYQ5 205 aa5.15□□□□□ -1.59
VPS39-204ENST00000561818 GHRHP01286 108 aa5.14□□□□□ -1.59
VPS39-204ENST00000561818 FOXI1Q12951 378 aa5.14□□□□□ -1.59
VPS39-204ENST00000561818 C5orf38Q86SI9 138 aa5.14□□□□□ -1.59
VPS39-204ENST00000561818 C2orf48Q96LS8 159 aa5.14□□□□□ -1.59
VPS39-204ENST00000561818 KLK12Q9UKR0 248 aa5.14□□□□□ -1.59
VPS39-204ENST00000561818 NUPR2A6NF83 97 aa5.13□□□□□ -1.59
VPS39-204ENST00000561818 H0YGX0 51 aa5.13□□□□□ -1.59
VPS39-204ENST00000561818 H3BQ85 93 aa5.13□□□□□ -1.59
VPS39-204ENST00000561818 SPAG11BQ08648 103 aa5.13□□□□□ -1.59
VPS39-204ENST00000561818 MRAPQ8TCY5 172 aa5.13□□□□□ -1.59
VPS39-204ENST00000561818 SND1-IT1Q9HBX3 110 aa5.13□□□□□ -1.59
VPS39-204ENST00000561818 RETNQ9HD89 108 aa5.13□□□□□ -1.59
VPS39-204ENST00000561818 A0A1B0GX51 115 aa5.12□□□□□ -1.59
VPS39-204ENST00000561818 GAGE12HA6NDE8 117 aa5.12□□□□□ -1.59
VPS39-204ENST00000561818 H3BMG7 143 aa5.12□□□□□ -1.59
VPS39-204ENST00000561818 ZNF561-AS1K7EIQ3 104 aa5.12□□□□□ -1.59
VPS39-204ENST00000561818 RPL13AP40429 203 aaKnown RBP5.12□□□□□ -1.59
VPS39-204ENST00000561818 NANOS2P60321 138 aaKnown RBP5.12□□□□□ -1.59
VPS39-204ENST00000561818 C21orf62-AS1Q17RA5 79 aa5.12□□□□□ -1.59
VPS39-204ENST00000561818 TTC32Q5I0X7 151 aa5.12□□□□□ -1.59
VPS39-204ENST00000561818 ADAMTSL4-AS1Q5T5F5 129 aa5.12□□□□□ -1.59
VPS39-204ENST00000561818 MIR7-3HGQ8N6C7 128 aa5.12□□□□□ -1.59
VPS39-204ENST00000561818 UBE2WQ96B02 151 aa5.12□□□□□ -1.59
VPS39-204ENST00000561818 LINC01600Q96MT4 127 aa5.12□□□□□ -1.59
VPS39-204ENST00000561818 ANK2Q01484 3957 aa5.12□□□□□ -1.59
VPS39-204ENST00000561818 TRBV10-2A0A0K0K1G8 114 aa5.11□□□□□ -1.59
VPS39-204ENST00000561818 H3BT86 120 aa5.11□□□□□ -1.59
VPS39-204ENST00000561818 RNF151Q2KHN1 245 aa5.11□□□□□ -1.59
VPS39-204ENST00000561818 TMEM126AQ9H061 195 aa5.11□□□□□ -1.59
VPS39-204ENST00000561818 FBN1P35555 2871 aaKnown RBP5.11□□□□□ -1.59
VPS39-204ENST00000561818 TRRAPQ9Y4A5 3859 aa5.1□□□□□ -1.59
VPS39-204ENST00000561818 RPL28P46779 137 aaKnown RBP5.1□□□□□ -1.59
VPS39-204ENST00000561818 ESRGQ1W209 222 aa5.1□□□□□ -1.59
VPS39-204ENST00000561818 C14orf177Q52M58 125 aa5.1□□□□□ -1.59
VPS39-204ENST00000561818 CLPSL2Q6UWE3 100 aa5.1□□□□□ -1.59
VPS39-204ENST00000561818 ENHOQ6UWT2 76 aa5.1□□□□□ -1.59
VPS39-204ENST00000561818 NBEAL2Q6ZNJ1 2754 aa5.1□□□□□ -1.59
VPS39-204ENST00000561818 DNAL4O96015 105 aa5.09□□□□□ -1.59
VPS39-204ENST00000561818 TRACP01848 142 aa5.09□□□□□ -1.59
VPS39-204ENST00000561818 KIAA0087Q14695 138 aa5.09□□□□□ -1.59
VPS39-204ENST00000561818 WFDC10BQ8IUB3 73 aa5.09□□□□□ -1.59
VPS39-204ENST00000561818 IGLV10-54A0A075B6I4 117 aa5.08□□□□□ -1.6
VPS39-204ENST00000561818 LST1O00453 97 aa5.08□□□□□ -1.6
VPS39-204ENST00000561818 TRIAP1O43715 76 aa5.08□□□□□ -1.6
VPS39-204ENST00000561818 PFN2P35080 140 aa5.08□□□□□ -1.6
VPS39-204ENST00000561818 OCIAD2Q56VL3 154 aa5.08□□□□□ -1.6
VPS39-204ENST00000561818 NTN5Q8WTR8 489 aaPredicted RBP5.08□□□□□ -1.6
VPS39-204ENST00000561818 CAMK2N2Q96S95 79 aa5.08□□□□□ -1.6
VPS39-204ENST00000561818 CYSRT1A8MQ03 144 aa5.07□□□□□ -1.6
VPS39-204ENST00000561818 H7C2G1 150 aa5.07□□□□□ -1.6
VPS39-204ENST00000561818 TNP2Q05952 138 aa5.07□□□□□ -1.6
VPS39-204ENST00000561818 TEN1Q86WV5 123 aa5.07□□□□□ -1.6
VPS39-204ENST00000561818 MGAM2Q2M2H8 2515 aa5.07□□□□□ -1.6
VPS39-204ENST00000561818 DNAH3Q8TD57 4116 aa5.07□□□□□ -1.6
VPS39-204ENST00000561818 IGKV2D-24A0A075B6R9 120 aa5.06□□□□□ -1.6
VPS39-204ENST00000561818 NDUFC2-KCTD14E9PQ53 114 aa5.06□□□□□ -1.6
VPS39-204ENST00000561818 SLC25A20O43772 301 aa5.06□□□□□ -1.6
VPS39-204ENST00000561818 TCL1BO95988 128 aa5.06□□□□□ -1.6
VPS39-204ENST00000561818 LINC01620Q4KN68 170 aa5.06□□□□□ -1.6
VPS39-204ENST00000561818 UBE2DNLQ8IWF7 75 aa5.06□□□□□ -1.6
VPS39-204ENST00000561818 ANKRD29Q8N6D5 301 aa5.06□□□□□ -1.6
VPS39-204ENST00000561818 DAND5Q8N907 189 aa5.06□□□□□ -1.6
VPS39-204ENST00000561818 PPDPFLQ8WWR9 84 aa5.06□□□□□ -1.6
VPS39-204ENST00000561818 MDFIQ99750 246 aa5.06□□□□□ -1.6
VPS39-204ENST00000561818 NAA38Q9BRA0 125 aaKnown RBP5.06□□□□□ -1.6
VPS39-204ENST00000561818 TRBV7-6A0A0J9YX20 115 aa5.05□□□□□ -1.6
VPS39-204ENST00000561818 A0A0U1RRA0 63 aa5.05□□□□□ -1.6
VPS39-204ENST00000561818 TLX1NBP0CAT3 122 aa5.05□□□□□ -1.6
VPS39-204ENST00000561818 NPC2P61916 151 aa5.05□□□□□ -1.6
VPS39-204ENST00000561818 S100A7L2Q5SY68 101 aa5.05□□□□□ -1.6
VPS39-204ENST00000561818 SOSTDC1Q6X4U4 206 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 110.9 ms