RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 PEA15Q15121 130 aa9.61□□□□□ -0.87
CLN3-208ENST00000561505 MRPL55Q7Z7F7 128 aaKnown RBP9.61□□□□□ -0.87
CLN3-208ENST00000561505 KRTAP13-1Q8IUC0 172 aa9.61□□□□□ -0.87
CLN3-208ENST00000561505 LINC00469Q8N7U9 141 aa9.61□□□□□ -0.87
CLN3-208ENST00000561505 Q8N8P6 123 aa9.61□□□□□ -0.87
CLN3-208ENST00000561505 VCX2Q9H322 139 aa9.61□□□□□ -0.87
CLN3-208ENST00000561505 F8VRH5 84 aa9.6□□□□□ -0.87
CLN3-208ENST00000561505 ALKBH7Q9BT30 221 aaPredicted RBP9.6□□□□□ -0.87
CLN3-208ENST00000561505 CTAG1AP78358 180 aa9.59□□□□□ -0.87
CLN3-208ENST00000561505 TYMSOSQ8TAI1 123 aa9.59□□□□□ -0.87
CLN3-208ENST00000561505 MAP1LC3AQ9H492 121 aa9.59□□□□□ -0.87
CLN3-208ENST00000561505 CDKN2A-AS1Q9UH64 79 aa9.59□□□□□ -0.87
CLN3-208ENST00000561505 MUC17Q685J3 4493 aa9.59□□□□□ -0.87
CLN3-208ENST00000561505 IGLV5-37A0A075B6J1 123 aa9.58□□□□□ -0.88
CLN3-208ENST00000561505 HERVK_113P63121 156 aa9.58□□□□□ -0.88
CLN3-208ENST00000561505 SEC11AP67812 179 aa9.58□□□□□ -0.88
CLN3-208ENST00000561505 KRTAP13-2Q52LG2 175 aa9.58□□□□□ -0.88
CLN3-208ENST00000561505 ORMDL2Q53FV1 153 aa9.58□□□□□ -0.88
CLN3-208ENST00000561505 TOMM7Q9P0U1 55 aa9.58□□□□□ -0.88
CLN3-208ENST00000561505 LOC389332A0A1B0GUA5 103 aa9.57□□□□□ -0.88
CLN3-208ENST00000561505 CXCL5P42830 114 aa9.57□□□□□ -0.88
CLN3-208ENST00000561505 LINC00167Q96N53 147 aa9.57□□□□□ -0.88
CLN3-208ENST00000561505 FAM229BQ4G0N7 80 aa9.56□□□□□ -0.88
CLN3-208ENST00000561505 TPRXLQ17RH7 258 aa9.55□□□□□ -0.88
CLN3-208ENST00000561505 TIMM17AQ99595 171 aa9.55□□□□□ -0.88
CLN3-208ENST00000561505 PAPPA-AS1Q5QFB9 102 aa9.54□□□□□ -0.88
CLN3-208ENST00000561505 hCG_2014768A0A024R1R8 64 aa9.53□□□□□ -0.88
CLN3-208ENST00000561505 IGLV5-45A0A087WSX0 123 aa9.53□□□□□ -0.88
CLN3-208ENST00000561505 SMIM1B2RUZ4 78 aa9.53□□□□□ -0.88
CLN3-208ENST00000561505 NXT2Q9NPJ8 142 aaKnown RBP9.53□□□□□ -0.88
CLN3-208ENST00000561505 ANAPC11Q9NYG5 84 aa9.53□□□□□ -0.88
CLN3-208ENST00000561505 PDZD11Q5EBL8 140 aa9.52□□□□□ -0.89
CLN3-208ENST00000561505 TOMM6Q96B49 74 aa9.52□□□□□ -0.89
CLN3-208ENST00000561505 RPL37AP8A6NKH3 93 aa9.51□□□□□ -0.89
CLN3-208ENST00000561505 G0S2P27469 103 aa9.51□□□□□ -0.89
CLN3-208ENST00000561505 KRTAP9-6A0A140TA67 174 aa9.5□□□□□ -0.89
CLN3-208ENST00000561505 ERASQ7Z444 233 aa9.5□□□□□ -0.89
CLN3-208ENST00000561505 ANAPC16Q96DE5 110 aa9.5□□□□□ -0.89
CLN3-208ENST00000561505 GEMIN7Q9H840 131 aaKnown RBP9.5□□□□□ -0.89
CLN3-208ENST00000561505 TINCRA0A1B0GVN0 87 aa9.49□□□□□ -0.89
CLN3-208ENST00000561505 PNRC1Q12796 327 aaPredicted RBP9.49□□□□□ -0.89
CLN3-208ENST00000561505 LINC00304Q8N9R0 145 aa9.49□□□□□ -0.89
CLN3-208ENST00000561505 COX7B2Q8TF08 81 aa9.48□□□□□ -0.89
CLN3-208ENST00000561505 LINC01546A6NGU7 62 aa9.47□□□□□ -0.89
CLN3-208ENST00000561505 RETNLBQ9BQ08 111 aa9.47□□□□□ -0.89
CLN3-208ENST00000561505 GAGE10A6NGK3 116 aa9.45□□□□□ -0.9
CLN3-208ENST00000561505 MT-ND4LP03901 98 aa9.45□□□□□ -0.9
CLN3-208ENST00000561505 IGLV7-46A0A075B6I9 117 aa9.44□□□□□ -0.9
CLN3-208ENST00000561505 LINC01549A6NIU2 74 aa9.44□□□□□ -0.9
CLN3-208ENST00000561505 UBE2AP49459 152 aa9.44□□□□□ -0.9
CLN3-208ENST00000561505 CDIP1Q9H305 208 aa9.44□□□□□ -0.9
CLN3-208ENST00000561505 ADCYAP1P18509 176 aa9.43□□□□□ -0.9
CLN3-208ENST00000561505 NKAPP1Q8N9T2 125 aa9.43□□□□□ -0.9
CLN3-208ENST00000561505 SCGB3A1Q96QR1 104 aa9.43□□□□□ -0.9
CLN3-208ENST00000561505 CST9LQ9H4G1 147 aa9.43□□□□□ -0.9
CLN3-208ENST00000561505 IGKV2D-26A0A0A0MRZ7 120 aa9.41□□□□□ -0.9
CLN3-208ENST00000561505 VPREB1P12018 145 aa9.41□□□□□ -0.9
CLN3-208ENST00000561505 PLEKHB2Q96CS7 222 aa9.41□□□□□ -0.9
CLN3-208ENST00000561505 MRPL18Q9H0U6 180 aaKnown RBP9.41□□□□□ -0.9
CLN3-208ENST00000561505 IGLV5-39A0A0G2JS06 123 aa9.4□□□□□ -0.9
CLN3-208ENST00000561505 A0A1B0GVG6 124 aa9.4□□□□□ -0.9
CLN3-208ENST00000561505 RAB5BP61020 215 aa9.4□□□□□ -0.9
CLN3-208ENST00000561505 TMEM126AQ9H061 195 aa9.4□□□□□ -0.9
CLN3-208ENST00000561505 IGKV2-28A0A075B6P5 120 aa9.39□□□□□ -0.91
CLN3-208ENST00000561505 SCO1O75880 301 aa9.39□□□□□ -0.91
CLN3-208ENST00000561505 IGKV2D-28P01615 120 aa9.39□□□□□ -0.91
CLN3-208ENST00000561505 SPINK8P0C7L1 97 aa9.39□□□□□ -0.91
CLN3-208ENST00000561505 M0R378 163 aa9.38□□□□□ -0.91
CLN3-208ENST00000561505 PRLHP81277 87 aa9.38□□□□□ -0.91
CLN3-208ENST00000561505 PMVKQ15126 192 aa9.38□□□□□ -0.91
CLN3-208ENST00000561505 PPDPFQ9H3Y8 114 aa9.38□□□□□ -0.91
CLN3-208ENST00000561505 ATP5LO75964 103 aa9.37□□□□□ -0.91
CLN3-208ENST00000561505 KIAA1644Q3SXP7 199 aa9.37□□□□□ -0.91
CLN3-208ENST00000561505 SPAG11AQ6PDA7 123 aa9.37□□□□□ -0.91
CLN3-208ENST00000561505 GNB1LQ9BYB4 327 aa9.37□□□□□ -0.91
CLN3-208ENST00000561505 TRAV9-1A0A075B6T8 112 aa9.36□□□□□ -0.91
CLN3-208ENST00000561505 TMEM238C9JI98 176 aa9.36□□□□□ -0.91
CLN3-208ENST00000561505 COX17Q14061 63 aa9.36□□□□□ -0.91
CLN3-208ENST00000561505 FP248Q71RG6 208 aaPredicted RBP9.36□□□□□ -0.91
CLN3-208ENST00000561505 C3orf22Q8N5N4 141 aa9.36□□□□□ -0.91
CLN3-208ENST00000561505 Q8NDZ9 215 aa9.36□□□□□ -0.91
CLN3-208ENST00000561505 SND1-IT1Q9HBX3 110 aa9.36□□□□□ -0.91
CLN3-208ENST00000561505 FAM19A1Q7Z5A9 133 aa9.35□□□□□ -0.91
CLN3-208ENST00000561505 H3BRM9 83 aa9.34□□□□□ -0.91
CLN3-208ENST00000561505 IGLC3P0DOY3 106 aa9.34□□□□□ -0.91
CLN3-208ENST00000561505 PFN2P35080 140 aa9.33□□□□□ -0.92
CLN3-208ENST00000561505 RPL24P83731 157 aaKnown RBP9.33□□□□□ -0.92
CLN3-208ENST00000561505 ERG28Q9UKR5 140 aa9.33□□□□□ -0.92
CLN3-208ENST00000561505 KRTAP13-3Q3SY46 172 aa9.32□□□□□ -0.92
CLN3-208ENST00000561505 ASB16-AS1Q495Z4 193 aa9.32□□□□□ -0.92
CLN3-208ENST00000561505 CBLN2Q8IUK8 224 aa9.32□□□□□ -0.92
CLN3-208ENST00000561505 LCE2DQ5TA82 110 aaPredicted RBP9.31□□□□□ -0.92
CLN3-208ENST00000561505 SPRR4Q96PI1 79 aa9.31□□□□□ -0.92
CLN3-208ENST00000561505 ZNF22P17026 224 aaPredicted RBP9.3□□□□□ -0.92
CLN3-208ENST00000561505 A0A096LNJ9 63 aa9.29□□□□□ -0.92
CLN3-208ENST00000561505 SFTA2Q6UW10 78 aa9.28□□□□□ -0.92
CLN3-208ENST00000561505 ZNF625Q96I27 306 aaPredicted RBP9.28□□□□□ -0.92
CLN3-208ENST00000561505 KRTAP4-1Q9BYQ7 146 aa9.27□□□□□ -0.93
CLN3-208ENST00000561505 RAB14P61106 215 aa9.26□□□□□ -0.93
CLN3-208ENST00000561505 COX19Q49B96 90 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms