RNA–Protein interactions for RNA: ENST00000559550.1

CASC4-210, Transcript of cancer susceptibility 4, humanhuman

TSL 3

Gene CASC4, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-210ENST00000559550 DEFB112Q30KQ8 113 aa-1.38□□□□□ -2.63
CASC4-210ENST00000559550 DYNLRB1Q9NP97 96 aa-1.38□□□□□ -2.63
CASC4-210ENST00000559550 CEP152O94986 1710 aa-1.38□□□□□ -2.63
CASC4-210ENST00000559550 GRIN2AQ12879 1464 aa-1.38□□□□□ -2.63
CASC4-210ENST00000559550 NSD3Q9BZ95 1437 aa-1.39□□□□□ -2.63
CASC4-210ENST00000559550 TRBV7-3A0A075B6L6 115 aa-1.39□□□□□ -2.63
CASC4-210ENST00000559550 C12orf73Q69YU5 71 aa-1.39□□□□□ -2.63
CASC4-210ENST00000559550 MAFIPQ8WZ33 124 aa-1.39□□□□□ -2.63
CASC4-210ENST00000559550 MGST2Q99735 147 aa-1.39□□□□□ -2.63
CASC4-210ENST00000559550 BPTFQ12830 3046 aa-1.39□□□□□ -2.63
CASC4-210ENST00000559550 KDM5AP29375 1690 aaKnown RBP-1.39□□□□□ -2.63
CASC4-210ENST00000559550 DOCK2Q92608 1830 aa-1.4□□□□□ -2.63
CASC4-210ENST00000559550 HMGN4O00479 90 aa-1.4□□□□□ -2.63
CASC4-210ENST00000559550 DEFB105AQ8NG35 78 aa-1.4□□□□□ -2.63
CASC4-210ENST00000559550 POLA1P09884 1462 aaPredicted RBP-1.4□□□□□ -2.63
CASC4-210ENST00000559550 CFTRP13569 1480 aa-1.4□□□□□ -2.63
CASC4-210ENST00000559550 PDE4DIPQ5VU43 2346 aa-1.4□□□□□ -2.63
CASC4-210ENST00000559550 COL4A6Q14031 1691 aa-1.41□□□□□ -2.63
CASC4-210ENST00000559550 ZFHX4Q86UP3 3567 aa-1.41□□□□□ -2.63
CASC4-210ENST00000559550 SERP1Q9Y6X1 66 aa-1.41□□□□□ -2.64
CASC4-210ENST00000559550 TULP4Q9NRJ4 1543 aa-1.41□□□□□ -2.64
CASC4-210ENST00000559550 ARHGEF12Q9NZN5 1544 aa-1.41□□□□□ -2.64
CASC4-210ENST00000559550 SHANK2Q9UPX8 1470 aa-1.42□□□□□ -2.64
CASC4-210ENST00000559550 MYO15AQ9UKN7 3530 aa-1.42□□□□□ -2.64
CASC4-210ENST00000559550 TLN2Q9Y4G6 2542 aa-1.42□□□□□ -2.64
CASC4-210ENST00000559550 SFT2D2O95562 160 aa-1.42□□□□□ -2.64
CASC4-210ENST00000559550 MT1BP07438 61 aa-1.42□□□□□ -2.64
CASC4-210ENST00000559550 RERGLQ9H628 205 aa-1.42□□□□□ -2.64
CASC4-210ENST00000559550 ARPC4P59998 168 aa-1.43□□□□□ -2.64
CASC4-210ENST00000559550 COPS9Q8WXC6 57 aa-1.43□□□□□ -2.64
CASC4-210ENST00000559550 PRUNE2Q8WUY3 3088 aa-1.43□□□□□ -2.64
CASC4-210ENST00000559550 DEFB135Q30KP9 77 aa-1.44□□□□□ -2.64
CASC4-210ENST00000559550 SPTAN1Q13813 2472 aaKnown RBP-1.44□□□□□ -2.64
CASC4-210ENST00000559550 TRBV7-4A0A0J9YYF1 115 aa-1.45□□□□□ -2.64
CASC4-210ENST00000559550 LINC00959A0A1B0GUT2 108 aa-1.45□□□□□ -2.64
CASC4-210ENST00000559550 DEFB1P60022 68 aa-1.45□□□□□ -2.64
CASC4-210ENST00000559550 PFDN5Q99471 154 aa-1.45□□□□□ -2.64
CASC4-210ENST00000559550 SNRNP25Q9BV90 132 aaKnown RBP-1.45□□□□□ -2.64
CASC4-210ENST00000559550 RAPGEF6Q8TEU7 1601 aa-1.45□□□□□ -2.64
CASC4-210ENST00000559550 KRTAP19-5Q3LI72 72 aa-1.46□□□□□ -2.64
CASC4-210ENST00000559550 C10orf113Q5VZT2 155 aa-1.46□□□□□ -2.64
CASC4-210ENST00000559550 MRPL54Q6P161 138 aaKnown RBP-1.46□□□□□ -2.64
CASC4-210ENST00000559550 TMEM263Q8WUH6 116 aaKnown RBP-1.46□□□□□ -2.64
CASC4-210ENST00000559550 RANBP2P49792 3224 aaKnown RBP-1.46□□□□□ -2.64
CASC4-210ENST00000559550 LOC105371267A0A1B0GV96 52 aa-1.47□□□□□ -2.64
CASC4-210ENST00000559550 LOC285095A0A1B0GVY8 99 aa-1.47□□□□□ -2.64
CASC4-210ENST00000559550 H3BNG1 76 aa-1.47□□□□□ -2.64
CASC4-210ENST00000559550 SPANXDQ9BXN6 97 aa-1.47□□□□□ -2.64
CASC4-210ENST00000559550 CPSF1Q10570 1443 aaKnown RBP-1.48□□□□□ -2.65
CASC4-210ENST00000559550 SPTBN5Q9NRC6 3674 aaKnown RBP-1.48□□□□□ -2.65
CASC4-210ENST00000559550 MGPP08493 103 aa-1.48□□□□□ -2.65
CASC4-210ENST00000559550 IGLC1P0CG04 106 aa-1.48□□□□□ -2.65
CASC4-210ENST00000559550 PPP3R2Q96LZ3 170 aa-1.48□□□□□ -2.65
CASC4-210ENST00000559550 SPRR4Q96PI1 79 aa-1.48□□□□□ -2.65
CASC4-210ENST00000559550 NAA60Q9H7X0 242 aa-1.48□□□□□ -2.65
CASC4-210ENST00000559550 BTAF1O14981 1849 aa-1.49□□□□□ -2.65
CASC4-210ENST00000559550 MEIG1Q5JSS6 88 aa-1.49□□□□□ -2.65
CASC4-210ENST00000559550 MT1MQ8N339 61 aa-1.49□□□□□ -2.65
CASC4-210ENST00000559550 LINC00474Q9P2X8 69 aa-1.49□□□□□ -2.65
CASC4-210ENST00000559550 TROQ12816 1431 aaPredicted RBP-1.49□□□□□ -2.65
CASC4-210ENST00000559550 PSME4Q14997 1843 aa-1.5□□□□□ -2.65
CASC4-210ENST00000559550 KIAA0556O60303 1618 aa-1.5□□□□□ -2.65
CASC4-210ENST00000559550 MIF4GDA9UHW6 222 aaKnown RBP-1.5□□□□□ -2.65
CASC4-210ENST00000559550 CHKB-CPT1BH3BT56 60 aa-1.5□□□□□ -2.65
CASC4-210ENST00000559550 SYS1-DBNDD2H3BUS1 97 aa-1.5□□□□□ -2.65
CASC4-210ENST00000559550 MT2AP02795 61 aa-1.5□□□□□ -2.65
CASC4-210ENST00000559550 NXT2Q9NPJ8 142 aaKnown RBP-1.5□□□□□ -2.65
CASC4-210ENST00000559550 KNDC1Q76NI1 1749 aa-1.5□□□□□ -2.65
CASC4-210ENST00000559550 MAGI1Q96QZ7 1491 aaPredicted RBP-1.5□□□□□ -2.65
CASC4-210ENST00000559550 HMGXB3Q12766 1538 aa-1.5□□□□□ -2.65
CASC4-210ENST00000559550 FREM2Q5SZK8 3169 aa-1.51□□□□□ -2.65
CASC4-210ENST00000559550 MYOM1P52179 1685 aa-1.51□□□□□ -2.65
CASC4-210ENST00000559550 UBA52P62987 128 aaKnown RBP-1.51□□□□□ -2.65
CASC4-210ENST00000559550 APLNQ9ULZ1 77 aa-1.51□□□□□ -2.65
CASC4-210ENST00000559550 ARHGEF5Q12774 1597 aa-1.51□□□□□ -2.65
CASC4-210ENST00000559550 Q56UQ5 140 aa-1.52□□□□□ -2.65
CASC4-210ENST00000559550 LINC01600Q96MT4 127 aa-1.52□□□□□ -2.65
CASC4-210ENST00000559550 LINC00470Q9BZP3 86 aa-1.52□□□□□ -2.65
CASC4-210ENST00000559550 MGAQ8IWI9 3026 aa-1.53□□□□□ -2.65
CASC4-210ENST00000559550 DMDP11532 3685 aa-1.53□□□□□ -2.65
CASC4-210ENST00000559550 FAM25AB3EWG3 89 aa-1.53□□□□□ -2.65
CASC4-210ENST00000559550 FAM25CB3EWG5 89 aa-1.53□□□□□ -2.65
CASC4-210ENST00000559550 FAM25GB3EWG6 89 aa-1.53□□□□□ -2.65
CASC4-210ENST00000559550 GNG7O60262 68 aa-1.53□□□□□ -2.65
CASC4-210ENST00000559550 COX8AP10176 69 aa-1.53□□□□□ -2.65
CASC4-210ENST00000559550 CATR1Q13166 79 aa-1.53□□□□□ -2.65
CASC4-210ENST00000559550 COMMD6Q7Z4G1 85 aa-1.53□□□□□ -2.65
CASC4-210ENST00000559550 FDCSPQ8NFU4 85 aa-1.53□□□□□ -2.65
CASC4-210ENST00000559550 MYOZ3Q8TDC0 251 aa-1.53□□□□□ -2.65
CASC4-210ENST00000559550 ARL11Q969Q4 196 aa-1.53□□□□□ -2.65
CASC4-210ENST00000559550 CDC42SE2Q9NRR3 84 aa-1.53□□□□□ -2.65
CASC4-210ENST00000559550 FAIMQ9NVQ4 179 aa-1.53□□□□□ -2.65
CASC4-210ENST00000559550 CENPEQ02224 2701 aa-1.54□□□□□ -2.66
CASC4-210ENST00000559550 SSSCA1O60232 199 aa-1.54□□□□□ -2.66
CASC4-210ENST00000559550 SMR3BP02814 79 aaPredicted RBP-1.54□□□□□ -2.66
CASC4-210ENST00000559550 SELENOWP63302 87 aa-1.54□□□□□ -2.66
CASC4-210ENST00000559550 C5orf38Q86SI9 138 aa-1.54□□□□□ -2.66
CASC4-210ENST00000559550 FAM223AQ8IWN6 122 aa-1.54□□□□□ -2.66
CASC4-210ENST00000559550 PAIP2BQ9ULR5 123 aaKnown RBP-1.54□□□□□ -2.66
CASC4-210ENST00000559550 ARL2-SNX15V9GYD0 113 aa-1.54□□□□□ -2.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms