RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 LINC00173Q6ZV60 143 aa2.76□□□□□ -1.97
SNX1-205ENST00000559339 Q8IZM0 81 aa2.76□□□□□ -1.97
SNX1-205ENST00000559339 C18orf32Q8TCD1 76 aa2.76□□□□□ -1.97
SNX1-205ENST00000559339 CST9LQ9H4G1 147 aa2.76□□□□□ -1.97
SNX1-205ENST00000559339 GAGE2DQ9UEU5 116 aa2.76□□□□□ -1.97
SNX1-205ENST00000559339 CDKN2A-AS1Q9UH64 79 aa2.76□□□□□ -1.97
SNX1-205ENST00000559339 DNAH5Q8TE73 4624 aa2.75□□□□□ -1.97
SNX1-205ENST00000559339 RYR1P21817 5038 aa2.75□□□□□ -1.97
SNX1-205ENST00000559339 KRTAP29-1A8MX34 341 aaPredicted RBP2.75□□□□□ -1.97
SNX1-205ENST00000559339 F8VRH5 84 aa2.75□□□□□ -1.97
SNX1-205ENST00000559339 OXTP01178 125 aa2.75□□□□□ -1.97
SNX1-205ENST00000559339 KIAA0087Q14695 138 aa2.75□□□□□ -1.97
SNX1-205ENST00000559339 C9orf116Q5BN46 136 aaPredicted RBP2.75□□□□□ -1.97
SNX1-205ENST00000559339 PDZD11Q5EBL8 140 aa2.75□□□□□ -1.97
SNX1-205ENST00000559339 XP32Q5T750 250 aa2.75□□□□□ -1.97
SNX1-205ENST00000559339 C2orf82Q6UX34 121 aa2.75□□□□□ -1.97
SNX1-205ENST00000559339 BAGE3Q86Y29 109 aa2.75□□□□□ -1.97
SNX1-205ENST00000559339 CBLN2Q8IUK8 224 aa2.75□□□□□ -1.97
SNX1-205ENST00000559339 CHCHD1Q96BP2 118 aaKnown RBP2.75□□□□□ -1.97
SNX1-205ENST00000559339 C6orf48Q9UBA6 75 aa2.75□□□□□ -1.97
SNX1-205ENST00000559339 DYNC1H1Q14204 4646 aaKnown RBP2.75□□□□□ -1.97
SNX1-205ENST00000559339 IGLV5-45A0A087WSX0 123 aa2.74□□□□□ -1.97
SNX1-205ENST00000559339 A0A1W2PNN7 141 aa2.74□□□□□ -1.97
SNX1-205ENST00000559339 SMIM1B2RUZ4 78 aa2.74□□□□□ -1.97
SNX1-205ENST00000559339 HSBP1O75506 76 aa2.74□□□□□ -1.97
SNX1-205ENST00000559339 KRTAP10-4P60372 401 aaPredicted RBP2.74□□□□□ -1.97
SNX1-205ENST00000559339 PRR3P79522 188 aaKnown RBP2.74□□□□□ -1.97
SNX1-205ENST00000559339 PMCHL1Q16048 86 aa2.74□□□□□ -1.97
SNX1-205ENST00000559339 TMEM170BQ5T4T1 132 aa2.74□□□□□ -1.97
SNX1-205ENST00000559339 C10orf25Q5T742 122 aa2.74□□□□□ -1.97
SNX1-205ENST00000559339 SFTA2Q6UW10 78 aa2.74□□□□□ -1.97
SNX1-205ENST00000559339 SLC7A5P1Q8MH63 180 aa2.74□□□□□ -1.97
SNX1-205ENST00000559339 COX7B2Q8TF08 81 aa2.74□□□□□ -1.97
SNX1-205ENST00000559339 APOBP04114 4563 aaKnown RBP2.73□□□□□ -1.97
SNX1-205ENST00000559339 TRGC2P03986 189 aa2.73□□□□□ -1.97
SNX1-205ENST00000559339 SPINK8P0C7L1 97 aa2.73□□□□□ -1.97
SNX1-205ENST00000559339 IGLC3P0DOY3 106 aa2.73□□□□□ -1.97
SNX1-205ENST00000559339 UBE2BP63146 152 aa2.73□□□□□ -1.97
SNX1-205ENST00000559339 C21orf62-AS1Q17RA5 79 aa2.73□□□□□ -1.97
SNX1-205ENST00000559339 REG3GQ6UW15 175 aa2.73□□□□□ -1.97
SNX1-205ENST00000559339 SPINK6Q6UWN8 80 aa2.73□□□□□ -1.97
SNX1-205ENST00000559339 FAM19A5Q7Z5A7 132 aaPredicted RBP2.73□□□□□ -1.97
SNX1-205ENST00000559339 IFI27L1Q96BM0 104 aa2.73□□□□□ -1.97
SNX1-205ENST00000559339 YPEL4Q96NS1 127 aa2.73□□□□□ -1.97
SNX1-205ENST00000559339 A0A096LNJ9 63 aa2.72□□□□□ -1.97
SNX1-205ENST00000559339 TRAV12-1A0A0B4J245 112 aa2.72□□□□□ -1.97
SNX1-205ENST00000559339 M0QXV9 152 aa2.72□□□□□ -1.97
SNX1-205ENST00000559339 LEPROTL1O95214 131 aa2.72□□□□□ -1.97
SNX1-205ENST00000559339 ZNF22P17026 224 aaPredicted RBP2.72□□□□□ -1.97
SNX1-205ENST00000559339 COX17Q14061 63 aa2.72□□□□□ -1.97
SNX1-205ENST00000559339 LBHQ53QV2 105 aaPredicted RBP2.72□□□□□ -1.97
SNX1-205ENST00000559339 C1orf137Q5JT78 98 aa2.72□□□□□ -1.97
SNX1-205ENST00000559339 SERTAD4-AS1Q5TG53 156 aa2.72□□□□□ -1.97
SNX1-205ENST00000559339 PHF5AQ7RTV0 110 aaKnown RBP2.72□□□□□ -1.97
SNX1-205ENST00000559339 URB1-AS1Q96HZ7 61 aa2.72□□□□□ -1.97
SNX1-205ENST00000559339 XAGE1AQ9HD64 81 aa2.72□□□□□ -1.97
SNX1-205ENST00000559339 HSPB8Q9UJY1 196 aa2.72□□□□□ -1.97
SNX1-205ENST00000559339 CHTOPQ9Y3Y2 248 aaKnown RBP2.72□□□□□ -1.97
SNX1-205ENST00000559339 ABCA13Q86UQ4 5058 aa2.72□□□□□ -1.97
SNX1-205ENST00000559339 VPS13BQ7Z7G8 4022 aa2.71□□□□□ -1.98
SNX1-205ENST00000559339 FAM168BA1KXE4 195 aa2.71□□□□□ -1.98
SNX1-205ENST00000559339 LINC00587B1AMM8 73 aa2.71□□□□□ -1.98
SNX1-205ENST00000559339 H0Y8G0 127 aa2.71□□□□□ -1.98
SNX1-205ENST00000559339 ATP6V1G1O75348 118 aa2.71□□□□□ -1.98
SNX1-205ENST00000559339 HNRNPA3P51991 378 aaKnown RBP2.71□□□□□ -1.98
SNX1-205ENST00000559339 C9orf129Q5T035 196 aaKnown RBP2.71□□□□□ -1.98
SNX1-205ENST00000559339 MRPL55Q7Z7F7 128 aaKnown RBP2.71□□□□□ -1.98
SNX1-205ENST00000559339 FAM19A2Q8N3H0 131 aa2.71□□□□□ -1.98
SNX1-205ENST00000559339 PSORS1C2Q9UIG4 136 aa2.71□□□□□ -1.98
SNX1-205ENST00000559339 IGLV5-39A0A0G2JS06 123 aa2.7□□□□□ -1.98
SNX1-205ENST00000559339 C11orf86A6NJI1 115 aa2.7□□□□□ -1.98
SNX1-205ENST00000559339 COLCA2A8K830 154 aa2.7□□□□□ -1.98
SNX1-205ENST00000559339 NUPR1O60356 82 aa2.7□□□□□ -1.98
SNX1-205ENST00000559339 SERF1AO75920 110 aa2.7□□□□□ -1.98
SNX1-205ENST00000559339 IGLV7-43P04211 117 aa2.7□□□□□ -1.98
SNX1-205ENST00000559339 PLNP26678 52 aa2.7□□□□□ -1.98
SNX1-205ENST00000559339 PFN2P35080 140 aa2.7□□□□□ -1.98
SNX1-205ENST00000559339 RPL24P83731 157 aaKnown RBP2.7□□□□□ -1.98
SNX1-205ENST00000559339 SRSF9Q13242 221 aaKnown RBP eCLIP2.7□□□□□ -1.98
SNX1-205ENST00000559339 ODF1Q14990 250 aa2.7□□□□□ -1.98
SNX1-205ENST00000559339 NKAPP1Q8N9T2 125 aa2.7□□□□□ -1.98
SNX1-205ENST00000559339 DIRC1Q969H9 104 aa2.7□□□□□ -1.98
SNX1-205ENST00000559339 LINC01600Q96MT4 127 aa2.7□□□□□ -1.98
SNX1-205ENST00000559339 TP73-AS1Q9UF72 201 aa2.7□□□□□ -1.98
SNX1-205ENST00000559339 ERG28Q9UKR5 140 aa2.7□□□□□ -1.98
SNX1-205ENST00000559339 C22orf24Q9Y442 160 aa2.7□□□□□ -1.98
SNX1-205ENST00000559339 FAT1Q14517 4588 aa2.69□□□□□ -1.98
SNX1-205ENST00000559339 LOC100996750A0A140TA64 210 aa2.69□□□□□ -1.98
SNX1-205ENST00000559339 TMEM223A0PJW6 202 aa2.69□□□□□ -1.98
SNX1-205ENST00000559339 FABP4P15090 132 aa2.69□□□□□ -1.98
SNX1-205ENST00000559339 LINC00158P58513 81 aa2.69□□□□□ -1.98
SNX1-205ENST00000559339 HERVK_113P61574 105 aa2.69□□□□□ -1.98
SNX1-205ENST00000559339 HERV-K104P63124 156 aa2.69□□□□□ -1.98
SNX1-205ENST00000559339 MEIG1Q5JSS6 88 aa2.69□□□□□ -1.98
SNX1-205ENST00000559339 ZNF625Q96I27 306 aaPredicted RBP2.69□□□□□ -1.98
SNX1-205ENST00000559339 MAP1LC3CQ9BXW4 147 aa2.69□□□□□ -1.98
SNX1-205ENST00000559339 KRTAP4-6Q9BYQ5 205 aa2.69□□□□□ -1.98
SNX1-205ENST00000559339 CDIP1Q9H305 208 aa2.69□□□□□ -1.98
SNX1-205ENST00000559339 PLA2G2DQ9UNK4 145 aa2.69□□□□□ -1.98
SNX1-205ENST00000559339 MYCBP2O75592 4640 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms