RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 SMIM1B2RUZ4 78 aa7.31□□□□□ -1.24
CCDC88C-212ENST00000556767 EPM2AB3EWF7 344 aa7.31□□□□□ -1.24
CCDC88C-212ENST00000556767 RPL18AQ02543 176 aaKnown RBP7.31□□□□□ -1.24
CCDC88C-212ENST00000556767 Q8IZM0 81 aa7.31□□□□□ -1.24
CCDC88C-212ENST00000556767 KRTAP17-1Q9BYP8 105 aa7.31□□□□□ -1.24
CCDC88C-212ENST00000556767 HSPB8Q9UJY1 196 aa7.31□□□□□ -1.24
CCDC88C-212ENST00000556767 TRAV12-1A0A0B4J245 112 aa7.3□□□□□ -1.24
CCDC88C-212ENST00000556767 C11orf86A6NJI1 115 aa7.3□□□□□ -1.24
CCDC88C-212ENST00000556767 FAM229AH3BQW9 127 aa7.3□□□□□ -1.24
CCDC88C-212ENST00000556767 ZNF22P17026 224 aaPredicted RBP7.3□□□□□ -1.24
CCDC88C-212ENST00000556767 RNF151Q2KHN1 245 aa7.3□□□□□ -1.24
CCDC88C-212ENST00000556767 TMEM170BQ5T4T1 132 aa7.3□□□□□ -1.24
CCDC88C-212ENST00000556767 Q5VSD8 79 aa7.3□□□□□ -1.24
CCDC88C-212ENST00000556767 SPACA4Q8TDM5 124 aa7.3□□□□□ -1.24
CCDC88C-212ENST00000556767 COX7B2Q8TF08 81 aa7.3□□□□□ -1.24
CCDC88C-212ENST00000556767 C6orf48Q9UBA6 75 aa7.3□□□□□ -1.24
CCDC88C-212ENST00000556767 APOBP04114 4563 aaKnown RBP7.29□□□□□ -1.24
CCDC88C-212ENST00000556767 HERC2O95714 4834 aa7.29□□□□□ -1.24
CCDC88C-212ENST00000556767 A0A087WYN8 130 aa7.29□□□□□ -1.24
CCDC88C-212ENST00000556767 LINC00528Q8N1L1 170 aa7.29□□□□□ -1.24
CCDC88C-212ENST00000556767 STPG4Q8N801 248 aa7.29□□□□□ -1.24
CCDC88C-212ENST00000556767 LINC00474Q9P2X8 69 aa7.29□□□□□ -1.24
CCDC88C-212ENST00000556767 TRBV30A0A0K0K1B3 111 aa7.28□□□□□ -1.24
CCDC88C-212ENST00000556767 F8VRH5 84 aa7.28□□□□□ -1.24
CCDC88C-212ENST00000556767 PTTG1IPP53801 180 aa7.28□□□□□ -1.24
CCDC88C-212ENST00000556767 CIRBPQ14011 172 aaKnown RBP7.28□□□□□ -1.24
CCDC88C-212ENST00000556767 KRTAP4-5Q9BYR2 181 aa7.28□□□□□ -1.24
CCDC88C-212ENST00000556767 CXCL5P42830 114 aa7.27□□□□□ -1.25
CCDC88C-212ENST00000556767 GAGE2EQ4V326 116 aa7.27□□□□□ -1.25
CCDC88C-212ENST00000556767 C9orf116Q5BN46 136 aaPredicted RBP7.27□□□□□ -1.25
CCDC88C-212ENST00000556767 MAP1LC3CQ9BXW4 147 aa7.27□□□□□ -1.25
CCDC88C-212ENST00000556767 GAGE2DQ9UEU5 116 aa7.27□□□□□ -1.25
CCDC88C-212ENST00000556767 PLA2G1BP04054 148 aaKnown RBP7.25□□□□□ -1.25
CCDC88C-212ENST00000556767 ODF1Q14990 250 aa7.25□□□□□ -1.25
CCDC88C-212ENST00000556767 Q6ZRP5 223 aa7.25□□□□□ -1.25
CCDC88C-212ENST00000556767 PMCHL2Q9BQD1 86 aa7.25□□□□□ -1.25
CCDC88C-212ENST00000556767 PLAC8Q9NZF1 115 aa7.25□□□□□ -1.25
CCDC88C-212ENST00000556767 IGLV5-39A0A0G2JS06 123 aa7.24□□□□□ -1.25
CCDC88C-212ENST00000556767 NDUFC2-KCTD14E9PQ53 114 aa7.24□□□□□ -1.25
CCDC88C-212ENST00000556767 TLX1NBP0CAT3 122 aa7.24□□□□□ -1.25
CCDC88C-212ENST00000556767 DNAH8Q96JB1 4490 aa7.24□□□□□ -1.25
CCDC88C-212ENST00000556767 HSPG2P98160 4391 aa7.24□□□□□ -1.25
CCDC88C-212ENST00000556767 TMEM223A0PJW6 202 aa7.23□□□□□ -1.25
CCDC88C-212ENST00000556767 RPL37AP61513 92 aaKnown RBP7.23□□□□□ -1.25
CCDC88C-212ENST00000556767 COA6Q5JTJ3 125 aaKnown RBP7.23□□□□□ -1.25
CCDC88C-212ENST00000556767 C7orf33Q8WU49 177 aa7.23□□□□□ -1.25
CCDC88C-212ENST00000556767 A0A1W2PNN7 141 aa7.22□□□□□ -1.25
CCDC88C-212ENST00000556767 DPM2O94777 84 aa7.22□□□□□ -1.25
CCDC88C-212ENST00000556767 PLNP26678 52 aa7.22□□□□□ -1.25
CCDC88C-212ENST00000556767 SYS1-DBNDD2H3BUS1 97 aa7.21□□□□□ -1.26
CCDC88C-212ENST00000556767 IGKCP01834 107 aa7.21□□□□□ -1.26
CCDC88C-212ENST00000556767 INAFM2P0DMQ5 153 aa7.21□□□□□ -1.26
CCDC88C-212ENST00000556767 ZNF625Q96I27 306 aaPredicted RBP7.21□□□□□ -1.26
CCDC88C-212ENST00000556767 XAGE1AQ9HD64 81 aa7.21□□□□□ -1.26
CCDC88C-212ENST00000556767 FAM168BA1KXE4 195 aa7.2□□□□□ -1.26
CCDC88C-212ENST00000556767 PFN2P35080 140 aa7.2□□□□□ -1.26
CCDC88C-212ENST00000556767 KRTDAPP60985 99 aa7.2□□□□□ -1.26
CCDC88C-212ENST00000556767 HERVK_113P61574 105 aa7.2□□□□□ -1.26
CCDC88C-212ENST00000556767 FAM19A5Q7Z5A7 132 aaPredicted RBP7.2□□□□□ -1.26
CCDC88C-212ENST00000556767 S100A6P06703 90 aa7.19□□□□□ -1.26
CCDC88C-212ENST00000556767 C9orf129Q5T035 196 aaKnown RBP7.19□□□□□ -1.26
CCDC88C-212ENST00000556767 SFTA2Q6UW10 78 aa7.19□□□□□ -1.26
CCDC88C-212ENST00000556767 S100A2P29034 98 aa7.18□□□□□ -1.26
CCDC88C-212ENST00000556767 PET117Q6UWS5 81 aa7.18□□□□□ -1.26
CCDC88C-212ENST00000556767 PHF5AQ7RTV0 110 aaKnown RBP7.18□□□□□ -1.26
CCDC88C-212ENST00000556767 ERG28Q9UKR5 140 aa7.18□□□□□ -1.26
CCDC88C-212ENST00000556767 C3orf79P0CE67 100 aa7.17□□□□□ -1.26
CCDC88C-212ENST00000556767 PLEKHB2Q96CS7 222 aa7.17□□□□□ -1.26
CCDC88C-212ENST00000556767 A0A0U1RRA0 63 aa7.16□□□□□ -1.26
CCDC88C-212ENST00000556767 M0QXV9 152 aa7.16□□□□□ -1.26
CCDC88C-212ENST00000556767 LEPROTO15243 131 aa7.16□□□□□ -1.26
CCDC88C-212ENST00000556767 LGALS3P17931 250 aaKnown RBP7.16□□□□□ -1.26
CCDC88C-212ENST00000556767 MEIG1Q5JSS6 88 aa7.16□□□□□ -1.26
CCDC88C-212ENST00000556767 LINC01545Q5VT33 79 aa7.16□□□□□ -1.26
CCDC88C-212ENST00000556767 NDUFA12Q9UI09 145 aa7.16□□□□□ -1.26
CCDC88C-212ENST00000556767 FAT1Q14517 4588 aa7.15□□□□□ -1.26
CCDC88C-212ENST00000556767 MYMXA0A1B0GTQ4 84 aa7.15□□□□□ -1.26
CCDC88C-212ENST00000556767 C20orf202A1L168 122 aa7.15□□□□□ -1.26
CCDC88C-212ENST00000556767 LINC00158P58513 81 aa7.15□□□□□ -1.26
CCDC88C-212ENST00000556767 J3QQQ9 107 aa7.14□□□□□ -1.27
CCDC88C-212ENST00000556767 KRTAP10-4P60372 401 aaPredicted RBP7.14□□□□□ -1.27
CCDC88C-212ENST00000556767 HERV-K104P63124 156 aa7.14□□□□□ -1.27
CCDC88C-212ENST00000556767 UBE2BP63146 152 aa7.14□□□□□ -1.27
CCDC88C-212ENST00000556767 COX17Q14061 63 aa7.14□□□□□ -1.27
CCDC88C-212ENST00000556767 SERTAD4-AS1Q5TG53 156 aa7.14□□□□□ -1.27
CCDC88C-212ENST00000556767 HIST3H2BBQ8N257 126 aa7.14□□□□□ -1.27
CCDC88C-212ENST00000556767 TSPEAR-AS2P59090 65 aa7.13□□□□□ -1.27
CCDC88C-212ENST00000556767 PRR3P79522 188 aaKnown RBP7.13□□□□□ -1.27
CCDC88C-212ENST00000556767 KRTAP7-1Q8IUC3 87 aa7.13□□□□□ -1.27
CCDC88C-212ENST00000556767 SND1-IT1Q9HBX3 110 aa7.13□□□□□ -1.27
CCDC88C-212ENST00000556767 SMIM13P0DJ93 91 aa7.12□□□□□ -1.27
CCDC88C-212ENST00000556767 SNRPEP62304 92 aaKnown RBP7.12□□□□□ -1.27
CCDC88C-212ENST00000556767 HIST1H2BLQ99880 126 aa7.12□□□□□ -1.27
CCDC88C-212ENST00000556767 C22orf24Q9Y442 160 aa7.12□□□□□ -1.27
CCDC88C-212ENST00000556767 LINC00587B1AMM8 73 aa7.11□□□□□ -1.27
CCDC88C-212ENST00000556767 E9PLD3 99 aa7.11□□□□□ -1.27
CCDC88C-212ENST00000556767 HNRNPA3P51991 378 aaKnown RBP7.11□□□□□ -1.27
CCDC88C-212ENST00000556767 LBHQ53QV2 105 aaPredicted RBP7.11□□□□□ -1.27
CCDC88C-212ENST00000556767 NKAPP1Q8N9T2 125 aa7.11□□□□□ -1.27
CCDC88C-212ENST00000556767 PSORS1C2Q9UIG4 136 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms