RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 C5orf38Q86SI9 138 aa6.05□□□□□ -1.44
SCFD1-220ENST00000556486 IMMP2LQ96T52 175 aa6.05□□□□□ -1.44
SCFD1-220ENST00000556486 EIF5A2Q9GZV4 153 aaKnown RBP6.05□□□□□ -1.44
SCFD1-220ENST00000556486 SPANXA1Q9NS26 97 aa6.05□□□□□ -1.44
SCFD1-220ENST00000556486 SMIM27A0A1W2PRY6 76 aa6.04□□□□□ -1.44
SCFD1-220ENST00000556486 IGLV7-43P04211 117 aa6.04□□□□□ -1.44
SCFD1-220ENST00000556486 LINC01547P58512 204 aaPredicted RBP6.04□□□□□ -1.44
SCFD1-220ENST00000556486 RPL18AQ02543 176 aaKnown RBP6.04□□□□□ -1.44
SCFD1-220ENST00000556486 TMEM241Q24JQ0 296 aa6.04□□□□□ -1.44
SCFD1-220ENST00000556486 C1orf137Q5JT78 98 aa6.04□□□□□ -1.44
SCFD1-220ENST00000556486 DIRC1Q969H9 104 aa6.04□□□□□ -1.44
SCFD1-220ENST00000556486 NDUFA1O15239 70 aa6.03□□□□□ -1.44
SCFD1-220ENST00000556486 SEC61GP60059 68 aa6.03□□□□□ -1.44
SCFD1-220ENST00000556486 PHF5AQ7RTV0 110 aaKnown RBP6.03□□□□□ -1.44
SCFD1-220ENST00000556486 SMIM29Q86T20 159 aa6.03□□□□□ -1.44
SCFD1-220ENST00000556486 AKAP14Q86UN6 197 aa6.03□□□□□ -1.44
SCFD1-220ENST00000556486 OPRPNQ99935 248 aaPredicted RBP6.03□□□□□ -1.44
SCFD1-220ENST00000556486 SMIM2Q9BVW6 85 aa6.03□□□□□ -1.44
SCFD1-220ENST00000556486 H0Y9J4 135 aa6.02□□□□□ -1.45
SCFD1-220ENST00000556486 RPL23P62829 140 aaKnown RBP6.02□□□□□ -1.45
SCFD1-220ENST00000556486 RPL39P62891 51 aaKnown RBP6.02□□□□□ -1.45
SCFD1-220ENST00000556486 ORAOV1Q8WV07 137 aa6.02□□□□□ -1.45
SCFD1-220ENST00000556486 IGLV1-50A0A075B6I6 118 aa6.01□□□□□ -1.45
SCFD1-220ENST00000556486 PPBPP02775 128 aa6.01□□□□□ -1.45
SCFD1-220ENST00000556486 KRTAP1-4P0C5Y4 121 aa6.01□□□□□ -1.45
SCFD1-220ENST00000556486 CKS2P33552 79 aa6.01□□□□□ -1.45
SCFD1-220ENST00000556486 HBBP68871 147 aa6.01□□□□□ -1.45
SCFD1-220ENST00000556486 KIAA0087Q14695 138 aa6.01□□□□□ -1.45
SCFD1-220ENST00000556486 KRTAP11-1Q8IUC1 163 aa6.01□□□□□ -1.45
SCFD1-220ENST00000556486 SMDT1Q9H4I9 107 aa6.01□□□□□ -1.45
SCFD1-220ENST00000556486 C6orf48Q9UBA6 75 aa6.01□□□□□ -1.45
SCFD1-220ENST00000556486 A0A1B0GXF2 115 aa6□□□□□ -1.45
SCFD1-220ENST00000556486 S100A8P05109 93 aa6□□□□□ -1.45
SCFD1-220ENST00000556486 UNQ6190/PRO20217Q6UXQ8 127 aa6□□□□□ -1.45
SCFD1-220ENST00000556486 KRTAP7-1Q8IUC3 87 aa6□□□□□ -1.45
SCFD1-220ENST00000556486 NAT8Q9UHE5 227 aa6□□□□□ -1.45
SCFD1-220ENST00000556486 PYGO1Q9Y3Y4 419 aa6□□□□□ -1.45
SCFD1-220ENST00000556486 TRBV30A0A0K0K1B3 111 aa5.99□□□□□ -1.45
SCFD1-220ENST00000556486 FAM168BA1KXE4 195 aa5.99□□□□□ -1.45
SCFD1-220ENST00000556486 IFITM10A6NMD0 228 aa5.99□□□□□ -1.45
SCFD1-220ENST00000556486 D6R8Y8 96 aa5.99□□□□□ -1.45
SCFD1-220ENST00000556486 F8W036 122 aa5.99□□□□□ -1.45
SCFD1-220ENST00000556486 KRTAP5-3Q6L8H2 238 aa5.99□□□□□ -1.45
SCFD1-220ENST00000556486 LINC01561Q8N1V8 128 aa5.99□□□□□ -1.45
SCFD1-220ENST00000556486 TGIF2-C20orf24A0A0A6YYL0 155 aa5.98□□□□□ -1.45
SCFD1-220ENST00000556486 C9JQL5 133 aa5.98□□□□□ -1.45
SCFD1-220ENST00000556486 NDUFC2-KCTD14E9PQ53 114 aa5.98□□□□□ -1.45
SCFD1-220ENST00000556486 NPYP01303 97 aa5.98□□□□□ -1.45
SCFD1-220ENST00000556486 ADIRFQ15847 76 aa5.98□□□□□ -1.45
SCFD1-220ENST00000556486 LINC00242Q5T6M2 205 aa5.98□□□□□ -1.45
SCFD1-220ENST00000556486 TSPAN13O95857 204 aa5.97□□□□□ -1.45
SCFD1-220ENST00000556486 IFI27P40305 119 aaPredicted RBP5.97□□□□□ -1.45
SCFD1-220ENST00000556486 RPL13AP40429 203 aaKnown RBP5.97□□□□□ -1.45
SCFD1-220ENST00000556486 ATP5L2Q7Z4Y8 100 aa5.97□□□□□ -1.45
SCFD1-220ENST00000556486 ORMDL3Q8N138 153 aa5.97□□□□□ -1.45
SCFD1-220ENST00000556486 IGLV4-3A0A075B6K6 122 aa5.96□□□□□ -1.46
SCFD1-220ENST00000556486 M0QXV9 152 aa5.96□□□□□ -1.46
SCFD1-220ENST00000556486 FAM19A5Q7Z5A7 132 aaPredicted RBP5.96□□□□□ -1.46
SCFD1-220ENST00000556486 TMEM141Q96I45 108 aa5.96□□□□□ -1.46
SCFD1-220ENST00000556486 LAMTOR2Q9Y2Q5 125 aa5.96□□□□□ -1.46
SCFD1-220ENST00000556486 CARHSP1Q9Y2V2 147 aaKnown RBP5.96□□□□□ -1.46
SCFD1-220ENST00000556486 RAB5AP20339 215 aa5.95□□□□□ -1.46
SCFD1-220ENST00000556486 UBE2D1P51668 147 aa5.95□□□□□ -1.46
SCFD1-220ENST00000556486 C6orf226Q5I0X4 101 aa5.95□□□□□ -1.46
SCFD1-220ENST00000556486 C9orf129Q5T035 196 aaKnown RBP5.95□□□□□ -1.46
SCFD1-220ENST00000556486 MRPL54Q6P161 138 aaKnown RBP5.95□□□□□ -1.46
SCFD1-220ENST00000556486 FAM19A3Q7Z5A8 133 aa5.95□□□□□ -1.46
SCFD1-220ENST00000556486 PEA15Q15121 130 aa5.94□□□□□ -1.46
SCFD1-220ENST00000556486 C2orf82Q6UX34 121 aa5.94□□□□□ -1.46
SCFD1-220ENST00000556486 TMEM136Q6ZRR5 245 aa5.94□□□□□ -1.46
SCFD1-220ENST00000556486 K7EMI3 77 aa5.93□□□□□ -1.46
SCFD1-220ENST00000556486 ZNF861PO60384 105 aa5.93□□□□□ -1.46
SCFD1-220ENST00000556486 UBE2BP63146 152 aa5.93□□□□□ -1.46
SCFD1-220ENST00000556486 ADAMTSL4-AS1Q5T5F5 129 aa5.93□□□□□ -1.46
SCFD1-220ENST00000556486 TEX43Q6ZNM6 134 aa5.93□□□□□ -1.46
SCFD1-220ENST00000556486 LINC00173Q6ZV60 143 aa5.93□□□□□ -1.46
SCFD1-220ENST00000556486 PACRGQ96M98 296 aaPredicted RBP5.93□□□□□ -1.46
SCFD1-220ENST00000556486 PRELID3AQ96N28 172 aa5.93□□□□□ -1.46
SCFD1-220ENST00000556486 AMELXQ99217 191 aa5.93□□□□□ -1.46
SCFD1-220ENST00000556486 CRCT1Q9UGL9 99 aa5.93□□□□□ -1.46
SCFD1-220ENST00000556486 NUPR1O60356 82 aa5.92□□□□□ -1.46
SCFD1-220ENST00000556486 Q8IZM0 81 aa5.92□□□□□ -1.46
SCFD1-220ENST00000556486 C2orf88Q9BSF0 95 aa5.92□□□□□ -1.46
SCFD1-220ENST00000556486 CYSLTR1Q9Y271 337 aa5.92□□□□□ -1.46
SCFD1-220ENST00000556486 FSIP2Q5CZC0 6907 aa5.91□□□□□ -1.46
SCFD1-220ENST00000556486 IGIPA6NJ69 53 aa5.91□□□□□ -1.46
SCFD1-220ENST00000556486 C2orf66Q6UXQ4 117 aa5.91□□□□□ -1.46
SCFD1-220ENST00000556486 Q6ZN92 141 aa5.91□□□□□ -1.46
SCFD1-220ENST00000556486 TP73-AS1Q9UF72 201 aa5.91□□□□□ -1.46
SCFD1-220ENST00000556486 CHTOPQ9Y3Y2 248 aaKnown RBP5.91□□□□□ -1.46
SCFD1-220ENST00000556486 UQCC3Q6UW78 93 aa5.9□□□□□ -1.46
SCFD1-220ENST00000556486 Q8N8P6 123 aa5.9□□□□□ -1.46
SCFD1-220ENST00000556486 RETNLBQ9BQ08 111 aa5.9□□□□□ -1.46
SCFD1-220ENST00000556486 MAP1LC3AQ9H492 121 aa5.9□□□□□ -1.46
SCFD1-220ENST00000556486 C22orf24Q9Y442 160 aa5.9□□□□□ -1.46
SCFD1-220ENST00000556486 CKS1BP61024 79 aa5.89□□□□□ -1.47
SCFD1-220ENST00000556486 SEC11AP67812 179 aa5.89□□□□□ -1.47
SCFD1-220ENST00000556486 ORMDL2Q53FV1 153 aa5.89□□□□□ -1.47
SCFD1-220ENST00000556486 MUC17Q685J3 4493 aa5.89□□□□□ -1.47
SCFD1-220ENST00000556486 F8VRH5 84 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms