RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 TSTD3H0UI37 97 aa7.07□□□□□ -1.28
TDP1-211ENST00000555178 PSCAO43653 123 aa7.07□□□□□ -1.28
TDP1-211ENST00000555178 C1orf134Q5TEV5 83 aa7.07□□□□□ -1.28
TDP1-211ENST00000555178 C2orf91Q6ZV80 131 aa7.07□□□□□ -1.28
TDP1-211ENST00000555178 LINC01561Q8N1V8 128 aa7.07□□□□□ -1.28
TDP1-211ENST00000555178 TNP2Q05952 138 aa7.07□□□□□ -1.28
TDP1-211ENST00000555178 C6orf226Q5I0X4 101 aa7.07□□□□□ -1.28
TDP1-211ENST00000555178 C10orf25Q5T742 122 aa7.07□□□□□ -1.28
TDP1-211ENST00000555178 Q8IZM0 81 aa7.07□□□□□ -1.28
TDP1-211ENST00000555178 UQCR10Q9UDW1 63 aa7.07□□□□□ -1.28
TDP1-211ENST00000555178 APOMO95445 188 aa7.06□□□□□ -1.28
TDP1-211ENST00000555178 PRSS2P07478 247 aa7.06□□□□□ -1.28
TDP1-211ENST00000555178 MIEN1Q9BRT3 115 aa7.06□□□□□ -1.28
TDP1-211ENST00000555178 NDUFA1O15239 70 aa7.05□□□□□ -1.28
TDP1-211ENST00000555178 TM2D2Q9BX73 214 aa7.05□□□□□ -1.28
TDP1-211ENST00000555178 A0A0J9YXY3 114 aa7.05□□□□□ -1.28
TDP1-211ENST00000555178 A0A0U1RRA0 63 aa7.05□□□□□ -1.28
TDP1-211ENST00000555178 SLPIP03973 132 aa7.05□□□□□ -1.28
TDP1-211ENST00000555178 C9orf116Q5BN46 136 aaPredicted RBP7.05□□□□□ -1.28
TDP1-211ENST00000555178 CFAP161Q6P656 301 aa7.05□□□□□ -1.28
TDP1-211ENST00000555178 UNQ6190/PRO20217Q6UXQ8 127 aa7.05□□□□□ -1.28
TDP1-211ENST00000555178 GVQW2A0A096LPI5 108 aaPredicted RBP7.04□□□□□ -1.28
TDP1-211ENST00000555178 SCGB1D4Q6XE38 83 aa7.04□□□□□ -1.28
TDP1-211ENST00000555178 COX11Q9Y6N1 276 aa7.04□□□□□ -1.28
TDP1-211ENST00000555178 ZNF561-AS1K7EIQ3 104 aa7.04□□□□□ -1.28
TDP1-211ENST00000555178 DLEU1O43261 78 aa7.04□□□□□ -1.28
TDP1-211ENST00000555178 CKS1BP61024 79 aa7.04□□□□□ -1.28
TDP1-211ENST00000555178 DAND5Q8N907 189 aa7.04□□□□□ -1.28
TDP1-211ENST00000555178 NTN5Q8WTR8 489 aaPredicted RBP7.04□□□□□ -1.28
TDP1-211ENST00000555178 DDTP30046 118 aa7.03□□□□□ -1.28
TDP1-211ENST00000555178 HNRNPA3P51991 378 aaKnown RBP7.03□□□□□ -1.28
TDP1-211ENST00000555178 ADAMTSL4-AS1Q5T5F5 129 aa7.03□□□□□ -1.28
TDP1-211ENST00000555178 Q6ZRU5 148 aa7.03□□□□□ -1.28
TDP1-211ENST00000555178 LITAFQ99732 161 aa7.03□□□□□ -1.28
TDP1-211ENST00000555178 PKHD1P08F94 4074 aa7.02□□□□□ -1.29
TDP1-211ENST00000555178 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.02□□□□□ -1.29
TDP1-211ENST00000555178 A0A087WTM6 91 aa7.02□□□□□ -1.29
TDP1-211ENST00000555178 CAMK2N2Q96S95 79 aa7.02□□□□□ -1.29
TDP1-211ENST00000555178 C6orf48Q9UBA6 75 aa7.02□□□□□ -1.29
TDP1-211ENST00000555178 DNAH5Q8TE73 4624 aa7.02□□□□□ -1.29
TDP1-211ENST00000555178 SMIM13P0DJ93 91 aa7.01□□□□□ -1.29
TDP1-211ENST00000555178 PFN2P35080 140 aa7.01□□□□□ -1.29
TDP1-211ENST00000555178 CTAG1AP78358 180 aa7.01□□□□□ -1.29
TDP1-211ENST00000555178 LINC01620Q4KN68 170 aa7.01□□□□□ -1.29
TDP1-211ENST00000555178 NPC2P61916 151 aa7.01□□□□□ -1.29
TDP1-211ENST00000555178 MEIG1Q5JSS6 88 aa7.01□□□□□ -1.29
TDP1-211ENST00000555178 EIF4EBP3O60516 100 aaPredicted RBP7□□□□□ -1.29
TDP1-211ENST00000555178 CXCL5P42830 114 aa7□□□□□ -1.29
TDP1-211ENST00000555178 KRTAP10-2P60368 255 aa7□□□□□ -1.29
TDP1-211ENST00000555178 ERG28Q9UKR5 140 aa7□□□□□ -1.29
TDP1-211ENST00000555178 LINC00587B1AMM8 73 aa6.99□□□□□ -1.29
TDP1-211ENST00000555178 HERV-K104P63124 156 aa6.99□□□□□ -1.29
TDP1-211ENST00000555178 SYCNQ0VAF6 134 aa6.99□□□□□ -1.29
TDP1-211ENST00000555178 C2orf48Q96LS8 159 aa6.99□□□□□ -1.29
TDP1-211ENST00000555178 HIGD1BQ9P298 99 aa6.99□□□□□ -1.29
TDP1-211ENST00000555178 LINC00158P58513 81 aa6.98□□□□□ -1.29
TDP1-211ENST00000555178 Q8N814 137 aa6.98□□□□□ -1.29
TDP1-211ENST00000555178 MIR7-3HGQ8N6C7 128 aa6.97□□□□□ -1.29
TDP1-211ENST00000555178 CARD19Q96LW7 228 aa6.97□□□□□ -1.29
TDP1-211ENST00000555178 HINT1P49773 126 aaPredicted RBP6.97□□□□□ -1.29
TDP1-211ENST00000555178 SOSTDC1Q6X4U4 206 aa6.97□□□□□ -1.29
TDP1-211ENST00000555178 HIST1H4GQ99525 98 aa6.97□□□□□ -1.29
TDP1-211ENST00000555178 TMEM238C9JI98 176 aa6.96□□□□□ -1.29
TDP1-211ENST00000555178 SRSF9Q13242 221 aaKnown RBP eCLIP6.96□□□□□ -1.29
TDP1-211ENST00000555178 GCSHP23434 173 aa6.96□□□□□ -1.3
TDP1-211ENST00000555178 SFTA2Q6UW10 78 aa6.96□□□□□ -1.3
TDP1-211ENST00000555178 TRBV30A0A0K0K1B3 111 aa6.95□□□□□ -1.3
TDP1-211ENST00000555178 TIMM17BO60830 172 aa6.95□□□□□ -1.3
TDP1-211ENST00000555178 FXYD2P54710 66 aa6.95□□□□□ -1.3
TDP1-211ENST00000555178 SPANXB1Q9NS25 103 aaPredicted RBP6.95□□□□□ -1.3
TDP1-211ENST00000555178 A0A1B0GVY2 172 aa6.95□□□□□ -1.3
TDP1-211ENST00000555178 HSD52Q0P140 79 aa6.95□□□□□ -1.3
TDP1-211ENST00000555178 Q6ZRP5 223 aa6.95□□□□□ -1.3
TDP1-211ENST00000555178 MUSTN1Q8IVN3 82 aa6.95□□□□□ -1.3
TDP1-211ENST00000555178 SPANXDQ9BXN6 97 aa6.95□□□□□ -1.3
TDP1-211ENST00000555178 SPANXCQ9NY87 97 aa6.95□□□□□ -1.3
TDP1-211ENST00000555178 EREGO14944 169 aa6.94□□□□□ -1.3
TDP1-211ENST00000555178 CNBPP62633 177 aaKnown RBP6.94□□□□□ -1.3
TDP1-211ENST00000555178 CIRBPQ14011 172 aaKnown RBP6.94□□□□□ -1.3
TDP1-211ENST00000555178 BATFQ16520 125 aa6.94□□□□□ -1.3
TDP1-211ENST00000555178 C14orf177Q52M58 125 aa6.94□□□□□ -1.3
TDP1-211ENST00000555178 XAGE1AQ9HD64 81 aa6.94□□□□□ -1.3
TDP1-211ENST00000555178 GAGE2EQ4V326 116 aa6.93□□□□□ -1.3
TDP1-211ENST00000555178 BVES-AS1Q5T3Y7 98 aa6.93□□□□□ -1.3
TDP1-211ENST00000555178 CEND1Q8N111 149 aa6.93□□□□□ -1.3
TDP1-211ENST00000555178 Q8NDZ9 215 aa6.93□□□□□ -1.3
TDP1-211ENST00000555178 LINC00308Q8TCZ7 52 aa6.93□□□□□ -1.3
TDP1-211ENST00000555178 GAGE2DQ9UEU5 116 aa6.93□□□□□ -1.3
TDP1-211ENST00000555178 RPL18AQ02543 176 aaKnown RBP6.93□□□□□ -1.3
TDP1-211ENST00000555178 SND1-IT1Q9HBX3 110 aa6.93□□□□□ -1.3
TDP1-211ENST00000555178 NDUFC2-KCTD14E9PQ53 114 aa6.92□□□□□ -1.3
TDP1-211ENST00000555178 SNHG12Q9BXW3 62 aa6.92□□□□□ -1.3
TDP1-211ENST00000555178 EPPK1P58107 5090 aaKnown RBP6.92□□□□□ -1.3
TDP1-211ENST00000555178 DNAH8Q96JB1 4490 aa6.92□□□□□ -1.3
TDP1-211ENST00000555178 F8WDY8 70 aa6.92□□□□□ -1.3
TDP1-211ENST00000555178 PANO1I0J062 215 aa6.92□□□□□ -1.3
TDP1-211ENST00000555178 COX17Q14061 63 aa6.92□□□□□ -1.3
TDP1-211ENST00000555178 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.91□□□□□ -1.3
TDP1-211ENST00000555178 A4D1N5 150 aa6.91□□□□□ -1.3
TDP1-211ENST00000555178 K7ERJ3 54 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms