RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 COX6A2Q02221 97 aa8.69□□□□□ -1.02
SHMT2-207ENST00000553837 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.69□□□□□ -1.02
SHMT2-207ENST00000553837 WFDC10AQ9H1F0 79 aa8.69□□□□□ -1.02
SHMT2-207ENST00000553837 PKIGQ9Y2B9 76 aa8.69□□□□□ -1.02
SHMT2-207ENST00000553837 GIG44P09565 113 aaPredicted RBP8.69□□□□□ -1.02
SHMT2-207ENST00000553837 Q9HAA7 133 aa8.69□□□□□ -1.02
SHMT2-207ENST00000553837 HECTD1Q9ULT8 2610 aa8.68□□□□□ -1.02
SHMT2-207ENST00000553837 FAM236DA0A1B0GTK5 79 aa8.68□□□□□ -1.02
SHMT2-207ENST00000553837 USP17L23D6RBM5 183 aa8.68□□□□□ -1.02
SHMT2-207ENST00000553837 FAM236CP0DP71 79 aa8.68□□□□□ -1.02
SHMT2-207ENST00000553837 C1orf195Q5TG92 126 aa8.68□□□□□ -1.02
SHMT2-207ENST00000553837 TRGV1A0A0A0MS02 117 aa8.67□□□□□ -1.02
SHMT2-207ENST00000553837 CYSRT1A8MQ03 144 aa8.67□□□□□ -1.02
SHMT2-207ENST00000553837 RNASE1P07998 156 aaKnown RBP8.67□□□□□ -1.02
SHMT2-207ENST00000553837 LINC00242Q5T6M2 205 aa8.67□□□□□ -1.02
SHMT2-207ENST00000553837 IGKV3D-7A0A0C4DH55 119 aa8.66□□□□□ -1.02
SHMT2-207ENST00000553837 Q6ZTI0 123 aa8.66□□□□□ -1.02
SHMT2-207ENST00000553837 FAM19A3Q7Z5A8 133 aa8.66□□□□□ -1.02
SHMT2-207ENST00000553837 C16orf95Q9H693 158 aa8.66□□□□□ -1.02
SHMT2-207ENST00000553837 UNC79Q9P2D8 2635 aa8.66□□□□□ -1.02
SHMT2-207ENST00000553837 SMIM1B2RUZ4 78 aa8.66□□□□□ -1.02
SHMT2-207ENST00000553837 SMIM26A0A096LP01 95 aa8.65□□□□□ -1.02
SHMT2-207ENST00000553837 CRPP02741 224 aa8.65□□□□□ -1.02
SHMT2-207ENST00000553837 FHL2Q14192 279 aa8.65□□□□□ -1.02
SHMT2-207ENST00000553837 OBSCN-AS1Q96MR7 158 aa8.65□□□□□ -1.02
SHMT2-207ENST00000553837 C14orf132Q9NPU4 83 aa8.65□□□□□ -1.02
SHMT2-207ENST00000553837 NOTCH3Q9UM47 2321 aa8.65□□□□□ -1.03
SHMT2-207ENST00000553837 H0YGX0 51 aa8.65□□□□□ -1.03
SHMT2-207ENST00000553837 SMR3AQ99954 134 aa8.65□□□□□ -1.03
SHMT2-207ENST00000553837 LINC00846Q9NV44 126 aa8.65□□□□□ -1.03
SHMT2-207ENST00000553837 C19orf73Q9NVV2 129 aa8.65□□□□□ -1.03
SHMT2-207ENST00000553837 TMEM243Q9BU79 118 aa8.64□□□□□ -1.03
SHMT2-207ENST00000553837 FLNBO75369 2602 aaKnown RBP8.64□□□□□ -1.03
SHMT2-207ENST00000553837 PLAC8L1A1L4L8 177 aa8.63□□□□□ -1.03
SHMT2-207ENST00000553837 LINC01561Q8N1V8 128 aa8.63□□□□□ -1.03
SHMT2-207ENST00000553837 IGLV1-51P01701 117 aa8.63□□□□□ -1.03
SHMT2-207ENST00000553837 NTM-AS1Q6ZSK4 140 aa8.62□□□□□ -1.03
SHMT2-207ENST00000553837 NOP10Q9NPE3 64 aaKnown RBP8.62□□□□□ -1.03
SHMT2-207ENST00000553837 A0A087WVE0 104 aa8.62□□□□□ -1.03
SHMT2-207ENST00000553837 A0A087WYN8 130 aa8.62□□□□□ -1.03
SHMT2-207ENST00000553837 KRTAP10-3P60369 221 aa8.62□□□□□ -1.03
SHMT2-207ENST00000553837 C9orf129Q5T035 196 aaKnown RBP8.61□□□□□ -1.03
SHMT2-207ENST00000553837 LINC00337Q8N6G1 96 aa8.61□□□□□ -1.03
SHMT2-207ENST00000553837 K7EQD1 137 aa8.6□□□□□ -1.03
SHMT2-207ENST00000553837 HILS1P60008 231 aa8.6□□□□□ -1.03
SHMT2-207ENST00000553837 CSNK1G2-AS1Q8NCQ2 148 aa8.6□□□□□ -1.03
SHMT2-207ENST00000553837 SMIM11BQ8TCY0 68 aa8.6□□□□□ -1.03
SHMT2-207ENST00000553837 SND1-IT1Q9HBX3 110 aa8.6□□□□□ -1.03
SHMT2-207ENST00000553837 C2CD3Q4AC94 2353 aa8.59□□□□□ -1.03
SHMT2-207ENST00000553837 S100A7L2Q5SY68 101 aa8.59□□□□□ -1.03
SHMT2-207ENST00000553837 IGKV2-28A0A075B6P5 120 aa8.59□□□□□ -1.03
SHMT2-207ENST00000553837 LOC100131303A0A0U1RQF7 123 aa8.59□□□□□ -1.03
SHMT2-207ENST00000553837 IGKV2D-28P01615 120 aa8.59□□□□□ -1.03
SHMT2-207ENST00000553837 ATP5EP2Q5VTU8 51 aa8.59□□□□□ -1.03
SHMT2-207ENST00000553837 BCE1O60756 84 aa8.58□□□□□ -1.04
SHMT2-207ENST00000553837 RPL36AP83881 106 aaKnown RBP8.58□□□□□ -1.04
SHMT2-207ENST00000553837 MIR7-3HGQ8N6C7 128 aa8.58□□□□□ -1.04
SHMT2-207ENST00000553837 RPL36ALQ969Q0 106 aaKnown RBP8.58□□□□□ -1.04
SHMT2-207ENST00000553837 TRBV10-1A0A0K0K1A3 114 aa8.57□□□□□ -1.04
SHMT2-207ENST00000553837 NCR3O14931 201 aa8.57□□□□□ -1.04
SHMT2-207ENST00000553837 CCKP06307 115 aa8.57□□□□□ -1.04
SHMT2-207ENST00000553837 LECT2O14960 151 aa8.56□□□□□ -1.04
SHMT2-207ENST00000553837 CDC42SE2Q9NRR3 84 aa8.56□□□□□ -1.04
SHMT2-207ENST00000553837 VWFP04275 2813 aa8.56□□□□□ -1.04
SHMT2-207ENST00000553837 GHRHP01286 108 aa8.56□□□□□ -1.04
SHMT2-207ENST00000553837 XCL1P47992 114 aa8.56□□□□□ -1.04
SHMT2-207ENST00000553837 C6orf226Q5I0X4 101 aa8.56□□□□□ -1.04
SHMT2-207ENST00000553837 CMC4P56277 68 aaPredicted RBP8.55□□□□□ -1.04
SHMT2-207ENST00000553837 SPATA3Q8NHX4 192 aa8.55□□□□□ -1.04
SHMT2-207ENST00000553837 COX7B2Q8TF08 81 aa8.55□□□□□ -1.04
SHMT2-207ENST00000553837 C16orf74Q96GX8 76 aa8.55□□□□□ -1.04
SHMT2-207ENST00000553837 H7BZZ5 65 aa8.55□□□□□ -1.04
SHMT2-207ENST00000553837 ATP5EP56381 51 aaPredicted RBP8.55□□□□□ -1.04
SHMT2-207ENST00000553837 LINC00158P58513 81 aa8.55□□□□□ -1.04
SHMT2-207ENST00000553837 FP248Q71RG6 208 aaPredicted RBP8.55□□□□□ -1.04
SHMT2-207ENST00000553837 ORMDL1Q9P0S3 153 aa8.55□□□□□ -1.04
SHMT2-207ENST00000553837 HIVEP2P31629 2446 aa8.54□□□□□ -1.04
SHMT2-207ENST00000553837 TRGV2A0A075B6R0 118 aa8.54□□□□□ -1.04
SHMT2-207ENST00000553837 BRK1Q8WUW1 75 aa8.54□□□□□ -1.04
SHMT2-207ENST00000553837 OTOGQ6ZRI0 2925 aa8.54□□□□□ -1.04
SHMT2-207ENST00000553837 C20orf197Q8N268 126 aa8.54□□□□□ -1.04
SHMT2-207ENST00000553837 JMJD7-PLA2G4BH0Y9G9 81 aa8.53□□□□□ -1.04
SHMT2-207ENST00000553837 CCL18P55774 89 aa8.53□□□□□ -1.04
SHMT2-207ENST00000553837 TRBV10-3A0A0K0K1G6 114 aa8.52□□□□□ -1.04
SHMT2-207ENST00000553837 LY6G6DO95868 133 aa8.52□□□□□ -1.04
SHMT2-207ENST00000553837 KLKP1Q107X0 134 aa8.52□□□□□ -1.04
SHMT2-207ENST00000553837 LINC00482Q8N8I6 264 aa8.52□□□□□ -1.05
SHMT2-207ENST00000553837 TRAV23DV6A0A075B6W5 121 aa8.51□□□□□ -1.05
SHMT2-207ENST00000553837 SLPIP03973 132 aa8.51□□□□□ -1.05
SHMT2-207ENST00000553837 TRBV6-4A0A1B0GX49 114 aa8.51□□□□□ -1.05
SHMT2-207ENST00000553837 IBA57-AS1B1ANH7 110 aa8.51□□□□□ -1.05
SHMT2-207ENST00000553837 UBE2L6O14933 153 aa8.51□□□□□ -1.05
SHMT2-207ENST00000553837 LYPD5Q6UWN5 251 aa8.51□□□□□ -1.05
SHMT2-207ENST00000553837 TOMM7Q9P0U1 55 aa8.51□□□□□ -1.05
SHMT2-207ENST00000553837 NBEAL2Q6ZNJ1 2754 aa8.51□□□□□ -1.05
SHMT2-207ENST00000553837 FN1P02751 2386 aaKnown RBP8.5□□□□□ -1.05
SHMT2-207ENST00000553837 TRGV4A0A0C4DH28 118 aa8.5□□□□□ -1.05
SHMT2-207ENST00000553837 PAX4O43316 350 aa8.5□□□□□ -1.05
SHMT2-207ENST00000553837 NDUFC1O43677 76 aa8.5□□□□□ -1.05
SHMT2-207ENST00000553837 TENM1Q9UKZ4 2725 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms