RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 CCDC32Q9BV29 185 aa1.96□□□□□ -2.1
LIMA1-208ENST00000551691 ZNF471Q9BX82 626 aaPredicted RBP1.96□□□□□ -2.1
LIMA1-208ENST00000551691 TP73-AS1Q9UF72 201 aa1.96□□□□□ -2.1
LIMA1-208ENST00000551691 TRBV10-2A0A0K0K1G8 114 aa1.95□□□□□ -2.1
LIMA1-208ENST00000551691 UBBP0CG47 229 aa1.95□□□□□ -2.1
LIMA1-208ENST00000551691 SNCAP37840 140 aa1.95□□□□□ -2.1
LIMA1-208ENST00000551691 FXYD4P59646 89 aa1.95□□□□□ -2.1
LIMA1-208ENST00000551691 CNBPP62633 177 aaKnown RBP1.95□□□□□ -2.1
LIMA1-208ENST00000551691 SUPT4H1P63272 117 aaKnown RBP1.95□□□□□ -2.1
LIMA1-208ENST00000551691 ZNF431Q8TF32 576 aaPredicted RBP1.95□□□□□ -2.1
LIMA1-208ENST00000551691 TXNDC17Q9BRA2 123 aa1.95□□□□□ -2.1
LIMA1-208ENST00000551691 MIXL1Q9H2W2 232 aa1.95□□□□□ -2.1
LIMA1-208ENST00000551691 C8orf4Q9NR00 106 aa1.95□□□□□ -2.1
LIMA1-208ENST00000551691 HSPB11Q9Y547 144 aa1.95□□□□□ -2.1
LIMA1-208ENST00000551691 TRAV30A0A087WSZ9 112 aa1.94□□□□□ -2.1
LIMA1-208ENST00000551691 TAX1BP3O14907 124 aa1.94□□□□□ -2.1
LIMA1-208ENST00000551691 PGLYRP1O75594 196 aaPredicted RBP1.94□□□□□ -2.1
LIMA1-208ENST00000551691 PMP2P02689 132 aa1.94□□□□□ -2.1
LIMA1-208ENST00000551691 COX6A2Q02221 97 aa1.94□□□□□ -2.1
LIMA1-208ENST00000551691 SLC38A11Q08AI6 406 aa1.94□□□□□ -2.1
LIMA1-208ENST00000551691 CCDC58Q4VC31 144 aa1.94□□□□□ -2.1
LIMA1-208ENST00000551691 LINC01554Q52M75 96 aa1.94□□□□□ -2.1
LIMA1-208ENST00000551691 SAMD13Q5VXD3 122 aa1.94□□□□□ -2.1
LIMA1-208ENST00000551691 SPANXA1Q9NS26 97 aa1.94□□□□□ -2.1
LIMA1-208ENST00000551691 NHP2Q9NX24 153 aaKnown RBP1.94□□□□□ -2.1
LIMA1-208ENST00000551691 FKBP11Q9NYL4 201 aa1.94□□□□□ -2.1
LIMA1-208ENST00000551691 EPDR1Q9UM22 224 aa1.94□□□□□ -2.1
LIMA1-208ENST00000551691 MDN1Q9NU22 5596 aa1.94□□□□□ -2.1
LIMA1-208ENST00000551691 TMSB15BA0A087X1C1 80 aa1.93□□□□□ -2.1
LIMA1-208ENST00000551691 MUC21A0A140T8X8 626 aa1.93□□□□□ -2.1
LIMA1-208ENST00000551691 C7orf71A4D174 169 aa1.93□□□□□ -2.1
LIMA1-208ENST00000551691 MEIS3P1A6NDR6 274 aa1.93□□□□□ -2.1
LIMA1-208ENST00000551691 M0R2T5 61 aa1.93□□□□□ -2.1
LIMA1-208ENST00000551691 HSD17B12Q53GQ0 312 aa1.93□□□□□ -2.1
LIMA1-208ENST00000551691 ENHOQ6UWT2 76 aa1.93□□□□□ -2.1
LIMA1-208ENST00000551691 Q8TAT8 98 aa1.93□□□□□ -2.1
LIMA1-208ENST00000551691 Q9BRP9 147 aa1.93□□□□□ -2.1
LIMA1-208ENST00000551691 CST9LQ9H4G1 147 aa1.93□□□□□ -2.1
LIMA1-208ENST00000551691 PPYP01298 95 aa1.92□□□□□ -2.1
LIMA1-208ENST00000551691 P0C880 135 aa1.92□□□□□ -2.1
LIMA1-208ENST00000551691 HIST1H1DP16402 221 aaKnown RBP1.92□□□□□ -2.1
LIMA1-208ENST00000551691 RNASE4P34096 147 aaKnown RBP1.92□□□□□ -2.1
LIMA1-208ENST00000551691 UBE2BP63146 152 aa1.92□□□□□ -2.1
LIMA1-208ENST00000551691 CATR1Q13166 79 aa1.92□□□□□ -2.1
LIMA1-208ENST00000551691 TMEM128Q5BJH2 165 aa1.92□□□□□ -2.1
LIMA1-208ENST00000551691 EIF5AL1Q6IS14 154 aaKnown RBP1.92□□□□□ -2.1
LIMA1-208ENST00000551691 LCN15Q6UWW0 184 aa1.92□□□□□ -2.1
LIMA1-208ENST00000551691 LAMTOR2Q9Y2Q5 125 aa1.92□□□□□ -2.1
LIMA1-208ENST00000551691 A0A1B0GVG6 124 aa1.91□□□□□ -2.1
LIMA1-208ENST00000551691 LGALS3P17931 250 aaKnown RBP1.91□□□□□ -2.1
LIMA1-208ENST00000551691 ASB16-AS1Q495Z4 193 aa1.91□□□□□ -2.1
LIMA1-208ENST00000551691 KRTAP26-1Q6PEX3 210 aa1.91□□□□□ -2.1
LIMA1-208ENST00000551691 EXOC3-AS1Q8N2X6 119 aa1.91□□□□□ -2.1
LIMA1-208ENST00000551691 NUP35Q8NFH5 326 aa1.91□□□□□ -2.1
LIMA1-208ENST00000551691 PLEKHB2Q96CS7 222 aa1.91□□□□□ -2.1
LIMA1-208ENST00000551691 CRYM-AS1A6NIL9 109 aa1.9□□□□□ -2.11
LIMA1-208ENST00000551691 SNRPGP15A8MWD9 76 aa1.9□□□□□ -2.11
LIMA1-208ENST00000551691 CORTO00230 105 aa1.9□□□□□ -2.11
LIMA1-208ENST00000551691 OR10J4P0C629 311 aa1.9□□□□□ -2.11
LIMA1-208ENST00000551691 AQP4P55087 323 aa1.9□□□□□ -2.11
LIMA1-208ENST00000551691 C1orf137Q5JT78 98 aa1.9□□□□□ -2.11
LIMA1-208ENST00000551691 SPANXN5Q5MJ07 72 aa1.9□□□□□ -2.11
LIMA1-208ENST00000551691 TMEM78Q5T7P6 136 aa1.9□□□□□ -2.11
LIMA1-208ENST00000551691 TSC22D3Q99576 134 aa1.9□□□□□ -2.11
LIMA1-208ENST00000551691 ATG5Q9H1Y0 275 aa1.9□□□□□ -2.11
LIMA1-208ENST00000551691 A0A096LNI7 61 aa1.89□□□□□ -2.11
LIMA1-208ENST00000551691 A0A1W2PRE2 83 aa1.89□□□□□ -2.11
LIMA1-208ENST00000551691 H3BRN7 92 aa1.89□□□□□ -2.11
LIMA1-208ENST00000551691 TRGC2P03986 189 aa1.89□□□□□ -2.11
LIMA1-208ENST00000551691 SLC25A4P12235 298 aa1.89□□□□□ -2.11
LIMA1-208ENST00000551691 RAB5CP51148 216 aa1.89□□□□□ -2.11
LIMA1-208ENST00000551691 NDUFA6P56556 154 aa1.89□□□□□ -2.11
LIMA1-208ENST00000551691 ARPC4P59998 168 aa1.89□□□□□ -2.11
LIMA1-208ENST00000551691 RAB4BP61018 213 aa1.89□□□□□ -2.11
LIMA1-208ENST00000551691 MSMO1Q15800 293 aa1.89□□□□□ -2.11
LIMA1-208ENST00000551691 TPRXLQ17RH7 258 aa1.89□□□□□ -2.11
LIMA1-208ENST00000551691 CLPSL2Q6UWE3 100 aa1.89□□□□□ -2.11
LIMA1-208ENST00000551691 TMEM91Q6ZNR0 172 aa1.89□□□□□ -2.11
LIMA1-208ENST00000551691 PRADC1Q9BSG0 188 aa1.89□□□□□ -2.11
LIMA1-208ENST00000551691 NPCDR1Q9BY65 106 aa1.89□□□□□ -2.11
LIMA1-208ENST00000551691 SPANXCQ9NY87 97 aa1.89□□□□□ -2.11
LIMA1-208ENST00000551691 TRAV1-1A0A0B4J248 108 aa1.88□□□□□ -2.11
LIMA1-208ENST00000551691 TCRBV3S1A0A5B6 114 aa1.88□□□□□ -2.11
LIMA1-208ENST00000551691 FAM24AA6NFZ4 105 aa1.88□□□□□ -2.11
LIMA1-208ENST00000551691 TMEM262E9PQX1 116 aa1.88□□□□□ -2.11
LIMA1-208ENST00000551691 TMEM256-PLSCR3K7ERE1 68 aa1.88□□□□□ -2.11
LIMA1-208ENST00000551691 KRTAP5-8O75690 187 aa1.88□□□□□ -2.11
LIMA1-208ENST00000551691 CST7O76096 145 aa1.88□□□□□ -2.11
LIMA1-208ENST00000551691 MT-ND6P03923 174 aa1.88□□□□□ -2.11
LIMA1-208ENST00000551691 SLC25A5P05141 298 aaKnown RBP1.88□□□□□ -2.11
LIMA1-208ENST00000551691 UBE2D1P51668 147 aa1.88□□□□□ -2.11
LIMA1-208ENST00000551691 TMBIM6P55061 237 aa1.88□□□□□ -2.11
LIMA1-208ENST00000551691 RPS25P62851 125 aaKnown RBP1.88□□□□□ -2.11
LIMA1-208ENST00000551691 ZNF345Q14585 488 aa1.88□□□□□ -2.11
LIMA1-208ENST00000551691 SPCS2Q15005 226 aa1.88□□□□□ -2.11
LIMA1-208ENST00000551691 SS18Q15532 418 aa1.88□□□□□ -2.11
LIMA1-208ENST00000551691 Q8NDZ9 215 aa1.88□□□□□ -2.11
LIMA1-208ENST00000551691 SLC25A21Q9BQT8 299 aaPredicted RBP1.88□□□□□ -2.11
LIMA1-208ENST00000551691 AGPAT4-IT1Q9H0P7 198 aa1.88□□□□□ -2.11
LIMA1-208ENST00000551691 A0A087WX48 190 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms