RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 PROK2Q9HC23 129 aa2.22□□□□□ -2.05
PRKDC-209ENST00000540819 SSC5DA1L4H1 1573 aa2.22□□□□□ -2.05
PRKDC-209ENST00000540819 KNTC1P50748 2209 aa2.22□□□□□ -2.05
PRKDC-209ENST00000540819 ZDBF2Q9HCK1 2354 aa2.22□□□□□ -2.05
PRKDC-209ENST00000540819 EFCAB5A4FU69 1503 aa2.22□□□□□ -2.05
PRKDC-209ENST00000540819 NKTRP30414 1462 aaKnown RBP2.21□□□□□ -2.06
PRKDC-209ENST00000540819 ATP7BP35670 1465 aa2.21□□□□□ -2.06
PRKDC-209ENST00000540819 C1orf167Q5SNV9 1468 aa2.21□□□□□ -2.06
PRKDC-209ENST00000540819 LY6G6CO95867 125 aa2.21□□□□□ -2.06
PRKDC-209ENST00000540819 GCHFRP30047 84 aa2.21□□□□□ -2.06
PRKDC-209ENST00000540819 ATP5EP2Q5VTU8 51 aa2.21□□□□□ -2.06
PRKDC-209ENST00000540819 PKD1L3Q7Z443 1732 aa2.21□□□□□ -2.06
PRKDC-209ENST00000540819 C6orf201Q7Z4U5 140 aa2.21□□□□□ -2.06
PRKDC-209ENST00000540819 DEFB107AQ8IZN7 70 aa2.21□□□□□ -2.06
PRKDC-209ENST00000540819 MADDQ8WXG6 1647 aa2.2□□□□□ -2.06
PRKDC-209ENST00000540819 ITSN1Q15811 1721 aa2.2□□□□□ -2.06
PRKDC-209ENST00000540819 G3V318 75 aa2.2□□□□□ -2.06
PRKDC-209ENST00000540819 PIN1P1O15428 100 aa2.2□□□□□ -2.06
PRKDC-209ENST00000540819 PRB1P04280 392 aa2.2□□□□□ -2.06
PRKDC-209ENST00000540819 C10orf113Q5VZT2 155 aa2.2□□□□□ -2.06
PRKDC-209ENST00000540819 NHSL1Q5SYE7 1610 aa2.2□□□□□ -2.06
PRKDC-209ENST00000540819 CADP27708 2225 aa2.19□□□□□ -2.06
PRKDC-209ENST00000540819 KMT2BQ9UMN6 2715 aaPredicted RBP2.19□□□□□ -2.06
PRKDC-209ENST00000540819 HFM1A2PYH4 1435 aa2.19□□□□□ -2.06
PRKDC-209ENST00000540819 PAPPA2Q9BXP8 1791 aa2.19□□□□□ -2.06
PRKDC-209ENST00000540819 PIK3C2BO00750 1634 aa2.19□□□□□ -2.06
PRKDC-209ENST00000540819 PLXNB2O15031 1838 aa2.19□□□□□ -2.06
PRKDC-209ENST00000540819 GNGT1P63211 74 aa2.18□□□□□ -2.06
PRKDC-209ENST00000540819 THOC2Q8NI27 1593 aaKnown RBP2.18□□□□□ -2.06
PRKDC-209ENST00000540819 MUC19Q7Z5P9 8384 aa2.17□□□□□ -2.06
PRKDC-209ENST00000540819 URB2Q14146 1524 aaKnown RBP2.17□□□□□ -2.06
PRKDC-209ENST00000540819 XRN1Q8IZH2 1706 aaKnown RBP2.17□□□□□ -2.06
PRKDC-209ENST00000540819 A0A087WWC5 75 aa2.17□□□□□ -2.06
PRKDC-209ENST00000540819 TRBV7-4A0A0J9YYF1 115 aa2.17□□□□□ -2.06
PRKDC-209ENST00000540819 A0A1B0GUT8 65 aa2.17□□□□□ -2.06
PRKDC-209ENST00000540819 SPINK7P58062 85 aa2.17□□□□□ -2.06
PRKDC-209ENST00000540819 KRTAP13-1Q8IUC0 172 aa2.17□□□□□ -2.06
PRKDC-209ENST00000540819 CEP170BQ9Y4F5 1589 aaPredicted RBP2.17□□□□□ -2.06
PRKDC-209ENST00000540819 TRBV6-1A0A0K0K1D8 114 aa2.16□□□□□ -2.06
PRKDC-209ENST00000540819 ZFHX3Q15911 3703 aa2.16□□□□□ -2.06
PRKDC-209ENST00000540819 CNTRLQ7Z7A1 2325 aa2.16□□□□□ -2.06
PRKDC-209ENST00000540819 J3QKU1 62 aa2.15□□□□□ -2.07
PRKDC-209ENST00000540819 IFI27P40305 119 aaPredicted RBP2.15□□□□□ -2.07
PRKDC-209ENST00000540819 KRTAP5-7Q6L8G8 165 aa2.15□□□□□ -2.07
PRKDC-209ENST00000540819 SAMD9Q5K651 1589 aa2.15□□□□□ -2.07
PRKDC-209ENST00000540819 A0A087WXM4 84 aa2.14□□□□□ -2.07
PRKDC-209ENST00000540819 HAMPP81172 84 aa2.14□□□□□ -2.07
PRKDC-209ENST00000540819 PLCH1Q4KWH8 1693 aa2.14□□□□□ -2.07
PRKDC-209ENST00000540819 ASXL1Q8IXJ9 1541 aa2.13□□□□□ -2.07
PRKDC-209ENST00000540819 K7EIL1 84 aa2.13□□□□□ -2.07
PRKDC-209ENST00000540819 FXYD6P3P58550 94 aa2.13□□□□□ -2.07
PRKDC-209ENST00000540819 CD163L1Q9NR16 1453 aa2.13□□□□□ -2.07
PRKDC-209ENST00000540819 ASXL3Q9C0F0 2248 aa2.12□□□□□ -2.07
PRKDC-209ENST00000540819 CCDC180Q9P1Z9 1646 aa2.12□□□□□ -2.07
PRKDC-209ENST00000540819 A0A0G2JMZ2 1700 aa2.11□□□□□ -2.07
PRKDC-209ENST00000540819 LYNX1P0DP58 116 aa2.11□□□□□ -2.07
PRKDC-209ENST00000540819 COX8AP10176 69 aa2.11□□□□□ -2.07
PRKDC-209ENST00000540819 NAV3Q8IVL0 2385 aa2.1□□□□□ -2.07
PRKDC-209ENST00000540819 KIAA0556O60303 1618 aa2.1□□□□□ -2.07
PRKDC-209ENST00000540819 AHCTF1Q8WYP5 2266 aa2.1□□□□□ -2.07
PRKDC-209ENST00000540819 NDUFB1O75438 58 aa2.1□□□□□ -2.07
PRKDC-209ENST00000540819 TIAM1Q13009 1591 aa2.1□□□□□ -2.07
PRKDC-209ENST00000540819 ABCA9Q8IUA7 1624 aa2.09□□□□□ -2.07
PRKDC-209ENST00000540819 A0A1B0GU69 56 aa2.09□□□□□ -2.07
PRKDC-209ENST00000540819 LRP6O75581 1613 aa2.09□□□□□ -2.08
PRKDC-209ENST00000540819 SORL1Q92673 2214 aa2.09□□□□□ -2.08
PRKDC-209ENST00000540819 TIAM2Q8IVF5 1701 aa2.08□□□□□ -2.08
PRKDC-209ENST00000540819 COL14A1Q05707 1796 aaKnown RBP2.08□□□□□ -2.08
PRKDC-209ENST00000540819 BCORQ6W2J9 1755 aa2.08□□□□□ -2.08
PRKDC-209ENST00000540819 UBR3Q6ZT12 1888 aa2.08□□□□□ -2.08
PRKDC-209ENST00000540819 KRTAP12-4P60329 112 aa2.08□□□□□ -2.08
PRKDC-209ENST00000540819 PAPPAQ13219 1627 aa2.08□□□□□ -2.08
PRKDC-209ENST00000540819 ZNF831Q5JPB2 1677 aa2.08□□□□□ -2.08
PRKDC-209ENST00000540819 CDC42BPGQ6DT37 1551 aa2.07□□□□□ -2.08
PRKDC-209ENST00000540819 CICQ96RK0 1608 aaPredicted RBP2.07□□□□□ -2.08
PRKDC-209ENST00000540819 RP1L1Q8IWN7 2480 aaPredicted RBP2.07□□□□□ -2.08
PRKDC-209ENST00000540819 S100A3P33764 101 aa2.07□□□□□ -2.08
PRKDC-209ENST00000540819 UBE2DNLQ8IWF7 75 aa2.07□□□□□ -2.08
PRKDC-209ENST00000540819 WIZO95785 1651 aa2.06□□□□□ -2.08
PRKDC-209ENST00000540819 CFAP43Q8NDM7 1665 aa2.06□□□□□ -2.08
PRKDC-209ENST00000540819 PARP4Q9UKK3 1724 aaKnown RBP2.06□□□□□ -2.08
PRKDC-209ENST00000540819 TRAV21A0A0B4J279 112 aa2.05□□□□□ -2.08
PRKDC-209ENST00000540819 H3BVH4 76 aa2.05□□□□□ -2.08
PRKDC-209ENST00000540819 HILPDAQ9Y5L2 63 aa2.05□□□□□ -2.08
PRKDC-209ENST00000540819 LRRC7Q96NW7 1537 aa2.05□□□□□ -2.08
PRKDC-209ENST00000540819 ERCC6L2Q5T890 1561 aa2.05□□□□□ -2.08
PRKDC-209ENST00000540819 FBN1P35555 2871 aaKnown RBP2.04□□□□□ -2.08
PRKDC-209ENST00000540819 ANGP03950 147 aaKnown RBP2.04□□□□□ -2.08
PRKDC-209ENST00000540819 DEFB112Q30KQ8 113 aa2.04□□□□□ -2.08
PRKDC-209ENST00000540819 NHSQ6T4R5 1651 aa2.04□□□□□ -2.08
PRKDC-209ENST00000540819 SSBP3-AS1Q7Z2R9 100 aa2.04□□□□□ -2.08
PRKDC-209ENST00000540819 POLR1AO95602 1720 aaPredicted RBP2.03□□□□□ -2.08
PRKDC-209ENST00000540819 PREX2Q70Z35 1606 aa2.03□□□□□ -2.08
PRKDC-209ENST00000540819 USP32Q8NFA0 1604 aa2.03□□□□□ -2.08
PRKDC-209ENST00000540819 ANKRD50Q9ULJ7 1429 aa2.03□□□□□ -2.08
PRKDC-209ENST00000540819 IFI6P09912 130 aa2.03□□□□□ -2.08
PRKDC-209ENST00000540819 LRRC37AA6NMS7 1700 aa2.03□□□□□ -2.09
PRKDC-209ENST00000540819 QSER1Q2KHR3 1735 aa2.03□□□□□ -2.09
PRKDC-209ENST00000540819 HIVEP2P31629 2446 aa2.02□□□□□ -2.09
PRKDC-209ENST00000540819 EIF2AK4Q9P2K8 1649 aaKnown RBP2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 145.7 ms