RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 CCKP06307 115 aa10□□□□□ -0.81
COLCA1-204ENST00000540738 ESRGQ1W209 222 aa10□□□□□ -0.81
COLCA1-204ENST00000540738 C10orf25Q5T742 122 aa9.99□□□□□ -0.81
COLCA1-204ENST00000540738 KLK9Q2XQG4 91 aa9.99□□□□□ -0.81
COLCA1-204ENST00000540738 AMELXQ99217 191 aa9.99□□□□□ -0.81
COLCA1-204ENST00000540738 C3orf84H3BNL1 204 aa9.98□□□□□ -0.81
COLCA1-204ENST00000540738 SLPIP03973 132 aa9.98□□□□□ -0.81
COLCA1-204ENST00000540738 TAX1BP3O14907 124 aa9.98□□□□□ -0.81
COLCA1-204ENST00000540738 COL27A1Q8IZC6 1860 aaPredicted RBP9.97□□□□□ -0.81
COLCA1-204ENST00000540738 NBDYA0A0U1RRE5 68 aa9.96□□□□□ -0.81
COLCA1-204ENST00000540738 MRPL55Q7Z7F7 128 aaKnown RBP9.96□□□□□ -0.81
COLCA1-204ENST00000540738 FAM19A4Q96LR4 140 aa9.96□□□□□ -0.81
COLCA1-204ENST00000540738 TRIAP1O43715 76 aa9.96□□□□□ -0.82
COLCA1-204ENST00000540738 AGRNO00468 2067 aa9.96□□□□□ -0.82
COLCA1-204ENST00000540738 HRCT1Q6UXD1 115 aa9.96□□□□□ -0.82
COLCA1-204ENST00000540738 ATOX1O00244 68 aa9.96□□□□□ -0.82
COLCA1-204ENST00000540738 C9orf116Q5BN46 136 aaPredicted RBP9.96□□□□□ -0.82
COLCA1-204ENST00000540738 Q8NAQ8 132 aa9.96□□□□□ -0.82
COLCA1-204ENST00000540738 YPEL4Q96NS1 127 aa9.96□□□□□ -0.82
COLCA1-204ENST00000540738 SMIM11BQ8TCY0 68 aa9.95□□□□□ -0.82
COLCA1-204ENST00000540738 FAM229AH3BQW9 127 aa9.95□□□□□ -0.82
COLCA1-204ENST00000540738 WFDC2Q14508 124 aa9.95□□□□□ -0.82
COLCA1-204ENST00000540738 PRYO14603 147 aa9.95□□□□□ -0.82
COLCA1-204ENST00000540738 TRBV10-3A0A0K0K1G6 114 aa9.94□□□□□ -0.82
COLCA1-204ENST00000540738 CASC2Q6XLA1 102 aa9.93□□□□□ -0.82
COLCA1-204ENST00000540738 ATP5EP2Q5VTU8 51 aa9.93□□□□□ -0.82
COLCA1-204ENST00000540738 K7EIL1 84 aa9.92□□□□□ -0.82
COLCA1-204ENST00000540738 KIF25-AS1Q9Y6Z4 181 aa9.92□□□□□ -0.82
COLCA1-204ENST00000540738 HELZ2Q9BYK8 2649 aaKnown RBP9.92□□□□□ -0.82
COLCA1-204ENST00000540738 Q6ZRU5 148 aa9.92□□□□□ -0.82
COLCA1-204ENST00000540738 LINC00643Q86TS7 51 aa9.92□□□□□ -0.82
COLCA1-204ENST00000540738 Q6JHZ5 121 aa9.92□□□□□ -0.82
COLCA1-204ENST00000540738 CIRBP-AS1Q8TBR5 109 aa9.92□□□□□ -0.82
COLCA1-204ENST00000540738 NDUFC2O95298 119 aa9.91□□□□□ -0.82
COLCA1-204ENST00000540738 C16orf90A8MZG2 172 aa9.9□□□□□ -0.82
COLCA1-204ENST00000540738 LINC00315P59091 139 aa9.9□□□□□ -0.82
COLCA1-204ENST00000540738 SEC61GP60059 68 aa9.9□□□□□ -0.82
COLCA1-204ENST00000540738 TEX49A0A1B0GTD5 131 aa9.9□□□□□ -0.83
COLCA1-204ENST00000540738 KRTAP1-3Q8IUG1 177 aa9.9□□□□□ -0.83
COLCA1-204ENST00000540738 NDUFV3P56181 108 aaKnown RBP9.89□□□□□ -0.83
COLCA1-204ENST00000540738 LST1O00453 97 aa9.88□□□□□ -0.83
COLCA1-204ENST00000540738 TMEM258P61165 79 aa9.88□□□□□ -0.83
COLCA1-204ENST00000540738 LINC00588Q9Y4M8 146 aa9.86□□□□□ -0.83
COLCA1-204ENST00000540738 LIMD2Q9BT23 127 aa9.86□□□□□ -0.83
COLCA1-204ENST00000540738 C19orf73Q9NVV2 129 aa9.86□□□□□ -0.83
COLCA1-204ENST00000540738 FAM236AA0A1B0GUQ0 79 aa9.84□□□□□ -0.83
COLCA1-204ENST00000540738 FAM236BA0A1B0GV22 79 aa9.84□□□□□ -0.83
COLCA1-204ENST00000540738 KRTAP10-11P60412 298 aa9.84□□□□□ -0.83
COLCA1-204ENST00000540738 RTL8CO15255 209 aa9.84□□□□□ -0.83
COLCA1-204ENST00000540738 C22orf24Q9Y442 160 aa9.84□□□□□ -0.83
COLCA1-204ENST00000540738 Q9BRP9 147 aa9.83□□□□□ -0.84
COLCA1-204ENST00000540738 KRTAP1-1Q07627 177 aa9.83□□□□□ -0.84
COLCA1-204ENST00000540738 NTM-AS1Q6ZSK4 140 aa9.83□□□□□ -0.84
COLCA1-204ENST00000540738 URB1-AS1Q96HZ7 61 aa9.82□□□□□ -0.84
COLCA1-204ENST00000540738 SCXQ7RTU7 201 aa9.81□□□□□ -0.84
COLCA1-204ENST00000540738 IGHV3OR16-9A0A0B4J2B5 98 aa9.81□□□□□ -0.84
COLCA1-204ENST00000540738 Q8N814 137 aa9.8□□□□□ -0.84
COLCA1-204ENST00000540738 PLA2G1BP04054 148 aaKnown RBP9.8□□□□□ -0.84
COLCA1-204ENST00000540738 MGAM2Q2M2H8 2515 aa9.8□□□□□ -0.84
COLCA1-204ENST00000540738 DNAH10OSP0CZ25 163 aa9.79□□□□□ -0.84
COLCA1-204ENST00000540738 KRTAP10-3P60369 221 aa9.79□□□□□ -0.84
COLCA1-204ENST00000540738 PRR3P79522 188 aaKnown RBP9.79□□□□□ -0.84
COLCA1-204ENST00000540738 C2orf91Q6ZV80 131 aa9.78□□□□□ -0.84
COLCA1-204ENST00000540738 Q6ZRP5 223 aa9.77□□□□□ -0.85
COLCA1-204ENST00000540738 TSPEAR-AS2P59090 65 aa9.77□□□□□ -0.85
COLCA1-204ENST00000540738 LINC00337Q8N6G1 96 aa9.77□□□□□ -0.85
COLCA1-204ENST00000540738 WFDC13Q8IUB5 93 aa9.77□□□□□ -0.85
COLCA1-204ENST00000540738 ENHOQ6UWT2 76 aa9.76□□□□□ -0.85
COLCA1-204ENST00000540738 TM2D3Q9BRN9 247 aa9.76□□□□□ -0.85
COLCA1-204ENST00000540738 IGLV5-39A0A0G2JS06 123 aa9.76□□□□□ -0.85
COLCA1-204ENST00000540738 PRLHP81277 87 aa9.76□□□□□ -0.85
COLCA1-204ENST00000540738 SMCR5Q8TEV8 140 aa9.75□□□□□ -0.85
COLCA1-204ENST00000540738 A8MTW9 85 aa9.75□□□□□ -0.85
COLCA1-204ENST00000540738 CSNK1G2-AS1Q8NCQ2 148 aa9.75□□□□□ -0.85
COLCA1-204ENST00000540738 J3KT08 172 aa9.74□□□□□ -0.85
COLCA1-204ENST00000540738 XGP55808 180 aa9.74□□□□□ -0.85
COLCA1-204ENST00000540738 A0A096LNJ9 63 aa9.74□□□□□ -0.85
COLCA1-204ENST00000540738 ADAMTSL4-AS1Q5T5F5 129 aa9.73□□□□□ -0.85
COLCA1-204ENST00000540738 SDIM1Q6ZPB5 146 aa9.73□□□□□ -0.85
COLCA1-204ENST00000540738 C6orf48Q9UBA6 75 aa9.73□□□□□ -0.85
COLCA1-204ENST00000540738 MUC4Q99102 2169 aa9.73□□□□□ -0.85
COLCA1-204ENST00000540738 LINC00310P59036 64 aa9.72□□□□□ -0.85
COLCA1-204ENST00000540738 LINC00167Q96N53 147 aa9.72□□□□□ -0.85
COLCA1-204ENST00000540738 GVQW2A0A096LPI5 108 aaPredicted RBP9.72□□□□□ -0.85
COLCA1-204ENST00000540738 LINC00336Q6ZUF6 198 aa9.72□□□□□ -0.85
COLCA1-204ENST00000540738 C5orf47Q569G3 176 aa9.71□□□□□ -0.86
COLCA1-204ENST00000540738 J3QL48 77 aa9.7□□□□□ -0.86
COLCA1-204ENST00000540738 CRYGAP11844 174 aa9.7□□□□□ -0.86
COLCA1-204ENST00000540738 FAM19A3Q7Z5A8 133 aa9.7□□□□□ -0.86
COLCA1-204ENST00000540738 FLNAP21333 2647 aaKnown RBP9.7□□□□□ -0.86
COLCA1-204ENST00000540738 LINC01546A6NGU7 62 aa9.7□□□□□ -0.86
COLCA1-204ENST00000540738 LINC00575Q6W349 94 aa9.69□□□□□ -0.86
COLCA1-204ENST00000540738 IGLV5-45A0A087WSX0 123 aa9.69□□□□□ -0.86
COLCA1-204ENST00000540738 IGHV6-1A0A0B4J1U7 121 aa9.68□□□□□ -0.86
COLCA1-204ENST00000540738 ITPR3Q14573 2671 aa9.67□□□□□ -0.86
COLCA1-204ENST00000540738 A0A087WSZ3 146 aa9.67□□□□□ -0.86
COLCA1-204ENST00000540738 CFAP46Q8IYW2 2715 aa9.67□□□□□ -0.86
COLCA1-204ENST00000540738 Q8N9L7 120 aa9.66□□□□□ -0.86
COLCA1-204ENST00000540738 USP24Q9UPU5 2620 aa9.66□□□□□ -0.86
COLCA1-204ENST00000540738 PRRC2CQ9Y520 2896 aaKnown RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms