RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 TLX1NBP0CAT3 122 aa9.38□□□□□ -0.91
UBE3B-212ENST00000540230 SEC11AP67812 179 aa9.38□□□□□ -0.91
UBE3B-212ENST00000540230 PRR3P79522 188 aaKnown RBP9.38□□□□□ -0.91
UBE3B-212ENST00000540230 TINCRA0A1B0GVN0 87 aa9.37□□□□□ -0.91
UBE3B-212ENST00000540230 FAM168BA1KXE4 195 aa9.37□□□□□ -0.91
UBE3B-212ENST00000540230 PMVKQ15126 192 aa9.37□□□□□ -0.91
UBE3B-212ENST00000540230 LINC00469Q8N7U9 141 aa9.37□□□□□ -0.91
UBE3B-212ENST00000540230 IGLV5-45A0A087WSX0 123 aa9.36□□□□□ -0.91
UBE3B-212ENST00000540230 TRBV30A0A0K0K1B3 111 aa9.36□□□□□ -0.91
UBE3B-212ENST00000540230 SMIM1B2RUZ4 78 aa9.36□□□□□ -0.91
UBE3B-212ENST00000540230 GAGE2EQ4V326 116 aa9.36□□□□□ -0.91
UBE3B-212ENST00000540230 Q8IZM0 81 aa9.36□□□□□ -0.91
UBE3B-212ENST00000540230 PACRGQ96M98 296 aaPredicted RBP9.36□□□□□ -0.91
UBE3B-212ENST00000540230 GAGE2DQ9UEU5 116 aa9.36□□□□□ -0.91
UBE3B-212ENST00000540230 HBDP02042 147 aa9.36□□□□□ -0.91
UBE3B-212ENST00000540230 PRSS2P07478 247 aa9.36□□□□□ -0.91
UBE3B-212ENST00000540230 PHF5AQ7RTV0 110 aaKnown RBP9.36□□□□□ -0.91
UBE3B-212ENST00000540230 TNXBP22105 4242 aa9.35□□□□□ -0.91
UBE3B-212ENST00000540230 PDZD11Q5EBL8 140 aa9.35□□□□□ -0.91
UBE3B-212ENST00000540230 C6orf226Q5I0X4 101 aa9.35□□□□□ -0.91
UBE3B-212ENST00000540230 KRTAP7-1Q8IUC3 87 aa9.35□□□□□ -0.91
UBE3B-212ENST00000540230 OXTP01178 125 aa9.34□□□□□ -0.91
UBE3B-212ENST00000540230 NDUFC2-KCTD14E9PQ53 114 aa9.33□□□□□ -0.92
UBE3B-212ENST00000540230 SPINK8P0C7L1 97 aa9.33□□□□□ -0.92
UBE3B-212ENST00000540230 CKS1BP61024 79 aa9.33□□□□□ -0.92
UBE3B-212ENST00000540230 NDUFA6P56556 154 aa9.32□□□□□ -0.92
UBE3B-212ENST00000540230 C9orf129Q5T035 196 aaKnown RBP9.32□□□□□ -0.92
UBE3B-212ENST00000540230 FAM19A5Q7Z5A7 132 aaPredicted RBP9.32□□□□□ -0.92
UBE3B-212ENST00000540230 IGLC3P0DOY3 106 aa9.31□□□□□ -0.92
UBE3B-212ENST00000540230 RAB5BP61020 215 aa9.31□□□□□ -0.92
UBE3B-212ENST00000540230 KRTAP11-1Q8IUC1 163 aa9.31□□□□□ -0.92
UBE3B-212ENST00000540230 TRGC2P03986 189 aa9.31□□□□□ -0.92
UBE3B-212ENST00000540230 COX7B2Q8TF08 81 aa9.31□□□□□ -0.92
UBE3B-212ENST00000540230 F8VRH5 84 aa9.3□□□□□ -0.92
UBE3B-212ENST00000540230 ZNF22P17026 224 aaPredicted RBP9.3□□□□□ -0.92
UBE3B-212ENST00000540230 PSORS1C2Q9UIG4 136 aa9.3□□□□□ -0.92
UBE3B-212ENST00000540230 MT1HL1P0DM35 61 aa9.29□□□□□ -0.92
UBE3B-212ENST00000540230 ATP5LO75964 103 aa9.28□□□□□ -0.92
UBE3B-212ENST00000540230 BAGE3Q86Y29 109 aa9.28□□□□□ -0.92
UBE3B-212ENST00000540230 CHCHD1Q96BP2 118 aaKnown RBP9.28□□□□□ -0.92
UBE3B-212ENST00000540230 XAGE1AQ9HD64 81 aa9.28□□□□□ -0.92
UBE3B-212ENST00000540230 C11orf86A6NJI1 115 aa9.27□□□□□ -0.93
UBE3B-212ENST00000540230 CXCL5P42830 114 aa9.27□□□□□ -0.93
UBE3B-212ENST00000540230 SRSF9Q13242 221 aaKnown RBP eCLIP9.27□□□□□ -0.93
UBE3B-212ENST00000540230 IGLV5-39A0A0G2JS06 123 aa9.26□□□□□ -0.93
UBE3B-212ENST00000540230 COLCA2A8K830 154 aa9.26□□□□□ -0.93
UBE3B-212ENST00000540230 M0QXV9 152 aa9.26□□□□□ -0.93
UBE3B-212ENST00000540230 LINC00310P59036 64 aa9.26□□□□□ -0.93
UBE3B-212ENST00000540230 SERTAD4-AS1Q5TG53 156 aa9.26□□□□□ -0.93
UBE3B-212ENST00000540230 FAM19A2Q8N3H0 131 aa9.26□□□□□ -0.93
UBE3B-212ENST00000540230 H3BRM9 83 aa9.26□□□□□ -0.93
UBE3B-212ENST00000540230 C1orf137Q5JT78 98 aa9.25□□□□□ -0.93
UBE3B-212ENST00000540230 HMCN2Q8NDA2 5059 aa9.24□□□□□ -0.93
UBE3B-212ENST00000540230 HSBP1O75506 76 aa9.24□□□□□ -0.93
UBE3B-212ENST00000540230 SPINK6Q6UWN8 80 aa9.24□□□□□ -0.93
UBE3B-212ENST00000540230 IFI27L1Q96BM0 104 aa9.24□□□□□ -0.93
UBE3B-212ENST00000540230 CHTOPQ9Y3Y2 248 aaKnown RBP9.24□□□□□ -0.93
UBE3B-212ENST00000540230 SCO1O75880 301 aa9.23□□□□□ -0.93
UBE3B-212ENST00000540230 NUPR1O60356 82 aa9.22□□□□□ -0.93
UBE3B-212ENST00000540230 SERF1AO75920 110 aa9.22□□□□□ -0.93
UBE3B-212ENST00000540230 TMEM170BQ5T4T1 132 aa9.22□□□□□ -0.93
UBE3B-212ENST00000540230 TRAV12-1A0A0B4J245 112 aa9.21□□□□□ -0.94
UBE3B-212ENST00000540230 UBE2BP63146 152 aa9.21□□□□□ -0.94
UBE3B-212ENST00000540230 C22orf24Q9Y442 160 aa9.21□□□□□ -0.94
UBE3B-212ENST00000540230 IGLV7-43P04211 117 aa9.2□□□□□ -0.94
UBE3B-212ENST00000540230 LINC01600Q96MT4 127 aa9.2□□□□□ -0.94
UBE3B-212ENST00000540230 TMEM223A0PJW6 202 aa9.18□□□□□ -0.94
UBE3B-212ENST00000540230 PFN2P35080 140 aa9.18□□□□□ -0.94
UBE3B-212ENST00000540230 ODF1Q14990 250 aa9.18□□□□□ -0.94
UBE3B-212ENST00000540230 ZNF625Q96I27 306 aaPredicted RBP9.18□□□□□ -0.94
UBE3B-212ENST00000540230 H0Y8G0 127 aa9.17□□□□□ -0.94
UBE3B-212ENST00000540230 LEPROTL1O95214 131 aa9.16□□□□□ -0.94
UBE3B-212ENST00000540230 REG3GQ6UW15 175 aa9.16□□□□□ -0.94
UBE3B-212ENST00000540230 ERG28Q9UKR5 140 aa9.15□□□□□ -0.94
UBE3B-212ENST00000540230 MRPL55Q7Z7F7 128 aaKnown RBP9.15□□□□□ -0.95
UBE3B-212ENST00000540230 TP73-AS1Q9UF72 201 aa9.15□□□□□ -0.95
UBE3B-212ENST00000540230 PLA2G2DQ9UNK4 145 aa9.15□□□□□ -0.95
UBE3B-212ENST00000540230 FABP4P15090 132 aa9.14□□□□□ -0.95
UBE3B-212ENST00000540230 KRTAP10-8P60410 259 aa9.14□□□□□ -0.95
UBE3B-212ENST00000540230 LINC00167Q96N53 147 aa9.13□□□□□ -0.95
UBE3B-212ENST00000540230 SND1-IT1Q9HBX3 110 aa9.13□□□□□ -0.95
UBE3B-212ENST00000540230 IGLV5-37A0A075B6J1 123 aa9.12□□□□□ -0.95
UBE3B-212ENST00000540230 GAGE10A6NGK3 116 aa9.12□□□□□ -0.95
UBE3B-212ENST00000540230 HIST1H2BKO60814 126 aa9.12□□□□□ -0.95
UBE3B-212ENST00000540230 HIST1H2BJP06899 126 aa9.12□□□□□ -0.95
UBE3B-212ENST00000540230 HIST1H2BOP23527 126 aa9.12□□□□□ -0.95
UBE3B-212ENST00000540230 HIST1H2BBP33778 126 aa9.12□□□□□ -0.95
UBE3B-212ENST00000540230 HIST1H2BDP58876 126 aa9.12□□□□□ -0.95
UBE3B-212ENST00000540230 HIST1H2BCP62807 126 aa9.12□□□□□ -0.95
UBE3B-212ENST00000540230 HIST2H2BEQ16778 126 aa9.12□□□□□ -0.95
UBE3B-212ENST00000540230 LBHQ53QV2 105 aaPredicted RBP9.12□□□□□ -0.95
UBE3B-212ENST00000540230 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.12□□□□□ -0.95
UBE3B-212ENST00000540230 Q8NDZ9 215 aa9.12□□□□□ -0.95
UBE3B-212ENST00000540230 HIST1H2BHQ93079 126 aa9.12□□□□□ -0.95
UBE3B-212ENST00000540230 HIST1H2BNQ99877 126 aa9.12□□□□□ -0.95
UBE3B-212ENST00000540230 HIST1H2BMQ99879 126 aa9.12□□□□□ -0.95
UBE3B-212ENST00000540230 RPL37AP8A6NKH3 93 aa9.11□□□□□ -0.95
UBE3B-212ENST00000540230 H0Y9J4 135 aa9.11□□□□□ -0.95
UBE3B-212ENST00000540230 DIRC1Q969H9 104 aa9.11□□□□□ -0.95
UBE3B-212ENST00000540230 PMCHL2Q9BQD1 86 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms