RNA–Protein interactions for RNA: ENST00000540090.5

LPCAT3-210, Transcript of lysophosphatidylcholine acyltransferase 3, humanhuman

TSL 1 (best)

Gene LPCAT3, Length 974 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT3-210ENST00000540090 RETNLBQ9BQ08 111 aa11.61□□□□□ -0.55
LPCAT3-210ENST00000540090 VCX2Q9H322 139 aa11.61□□□□□ -0.55
LPCAT3-210ENST00000540090 TPRXLQ17RH7 258 aa11.6□□□□□ -0.55
LPCAT3-210ENST00000540090 C2orf66Q6UXQ4 117 aa11.6□□□□□ -0.55
LPCAT3-210ENST00000540090 LINC00167Q96N53 147 aa11.6□□□□□ -0.55
LPCAT3-210ENST00000540090 CDIP1Q9H305 208 aa11.6□□□□□ -0.55
LPCAT3-210ENST00000540090 F8VRH5 84 aa11.59□□□□□ -0.55
LPCAT3-210ENST00000540090 CYSLTR1Q9Y271 337 aa11.59□□□□□ -0.55
LPCAT3-210ENST00000540090 LOC389332A0A1B0GUA5 103 aa11.58□□□□□ -0.56
LPCAT3-210ENST00000540090 RPL37AP8A6NKH3 93 aa11.58□□□□□ -0.56
LPCAT3-210ENST00000540090 NPSP0C0P6 89 aa11.58□□□□□ -0.56
LPCAT3-210ENST00000540090 AKAP14Q86UN6 197 aa11.57□□□□□ -0.56
LPCAT3-210ENST00000540090 KRTAP13-1Q8IUC0 172 aa11.57□□□□□ -0.56
LPCAT3-210ENST00000540090 LINC00304Q8N9R0 145 aa11.57□□□□□ -0.56
LPCAT3-210ENST00000540090 LAMTOR2Q9Y2Q5 125 aa11.57□□□□□ -0.56
LPCAT3-210ENST00000540090 IGIPA6NJ69 53 aa11.56□□□□□ -0.56
LPCAT3-210ENST00000540090 FAM229BQ4G0N7 80 aa11.56□□□□□ -0.56
LPCAT3-210ENST00000540090 ATP5L2Q7Z4Y8 100 aa11.56□□□□□ -0.56
LPCAT3-210ENST00000540090 CDKN2A-AS1Q9UH64 79 aa11.56□□□□□ -0.56
LPCAT3-210ENST00000540090 IGLV7-46A0A075B6I9 117 aa11.55□□□□□ -0.56
LPCAT3-210ENST00000540090 HERVK_113P63121 156 aa11.55□□□□□ -0.56
LPCAT3-210ENST00000540090 Q8N8P6 123 aa11.55□□□□□ -0.56
LPCAT3-210ENST00000540090 MAP1LC3AQ9H492 121 aa11.55□□□□□ -0.56
LPCAT3-210ENST00000540090 SEC11AP67812 179 aa11.54□□□□□ -0.56
LPCAT3-210ENST00000540090 SRSF3P84103 164 aaKnown RBP11.54□□□□□ -0.56
LPCAT3-210ENST00000540090 CXCL5P42830 114 aa11.53□□□□□ -0.56
LPCAT3-210ENST00000540090 CTAG1AP78358 180 aa11.53□□□□□ -0.56
LPCAT3-210ENST00000540090 GAGE10A6NGK3 116 aa11.52□□□□□ -0.57
LPCAT3-210ENST00000540090 UBE2AP49459 152 aa11.52□□□□□ -0.57
LPCAT3-210ENST00000540090 PEA15Q15121 130 aa11.52□□□□□ -0.57
LPCAT3-210ENST00000540090 ORMDL2Q53FV1 153 aa11.52□□□□□ -0.57
LPCAT3-210ENST00000540090 IGLV5-37A0A075B6J1 123 aa11.51□□□□□ -0.57
LPCAT3-210ENST00000540090 GEMIN7Q9H840 131 aaKnown RBP11.51□□□□□ -0.57
LPCAT3-210ENST00000540090 K7EMI3 77 aa11.5□□□□□ -0.57
LPCAT3-210ENST00000540090 IGKV2D-26A0A0A0MRZ7 120 aa11.49□□□□□ -0.57
LPCAT3-210ENST00000540090 PNRC1Q12796 327 aaPredicted RBP11.49□□□□□ -0.57
LPCAT3-210ENST00000540090 PAPPA-AS1Q5QFB9 102 aa11.49□□□□□ -0.57
LPCAT3-210ENST00000540090 SMIM1B2RUZ4 78 aa11.46□□□□□ -0.57
LPCAT3-210ENST00000540090 PDZD11Q5EBL8 140 aa11.46□□□□□ -0.57
LPCAT3-210ENST00000540090 TIMM17AQ99595 171 aa11.46□□□□□ -0.57
LPCAT3-210ENST00000540090 PPDPFQ9H3Y8 114 aa11.46□□□□□ -0.57
LPCAT3-210ENST00000540090 NKAPP1Q8N9T2 125 aa11.45□□□□□ -0.58
LPCAT3-210ENST00000540090 COX7B2Q8TF08 81 aa11.45□□□□□ -0.58
LPCAT3-210ENST00000540090 G0S2P27469 103 aa11.44□□□□□ -0.58
LPCAT3-210ENST00000540090 RAB5BP61020 215 aa11.44□□□□□ -0.58
LPCAT3-210ENST00000540090 NXT2Q9NPJ8 142 aaKnown RBP11.44□□□□□ -0.58
LPCAT3-210ENST00000540090 TOMM6Q96B49 74 aa11.43□□□□□ -0.58
LPCAT3-210ENST00000540090 IGKV2-28A0A075B6P5 120 aa11.42□□□□□ -0.58
LPCAT3-210ENST00000540090 SCO1O75880 301 aa11.42□□□□□ -0.58
LPCAT3-210ENST00000540090 IGKV2D-28P01615 120 aa11.42□□□□□ -0.58
LPCAT3-210ENST00000540090 PRLHP81277 87 aa11.42□□□□□ -0.58
LPCAT3-210ENST00000540090 hCG_2014768A0A024R1R8 64 aa11.41□□□□□ -0.58
LPCAT3-210ENST00000540090 IGLV5-45A0A087WSX0 123 aa11.41□□□□□ -0.58
LPCAT3-210ENST00000540090 TINCRA0A1B0GVN0 87 aa11.41□□□□□ -0.58
LPCAT3-210ENST00000540090 ERASQ7Z444 233 aa11.4□□□□□ -0.58
LPCAT3-210ENST00000540090 PLEKHB2Q96CS7 222 aa11.39□□□□□ -0.59
LPCAT3-210ENST00000540090 SPAG11AQ6PDA7 123 aa11.38□□□□□ -0.59
LPCAT3-210ENST00000540090 FAM19A1Q7Z5A9 133 aa11.38□□□□□ -0.59
LPCAT3-210ENST00000540090 C3orf22Q8N5N4 141 aa11.38□□□□□ -0.59
LPCAT3-210ENST00000540090 TMEM126AQ9H061 195 aa11.38□□□□□ -0.59
LPCAT3-210ENST00000540090 LCE2DQ5TA82 110 aaPredicted RBP11.37□□□□□ -0.59
LPCAT3-210ENST00000540090 SCGB3A1Q96QR1 104 aa11.37□□□□□ -0.59
LPCAT3-210ENST00000540090 TMEM238C9JI98 176 aa11.36□□□□□ -0.59
LPCAT3-210ENST00000540090 SPINK8P0C7L1 97 aa11.36□□□□□ -0.59
LPCAT3-210ENST00000540090 ADCYAP1P18509 176 aa11.36□□□□□ -0.59
LPCAT3-210ENST00000540090 FP248Q71RG6 208 aaPredicted RBP11.36□□□□□ -0.59
LPCAT3-210ENST00000540090 ANAPC16Q96DE5 110 aa11.35□□□□□ -0.59
LPCAT3-210ENST00000540090 M0R378 163 aa11.34□□□□□ -0.59
LPCAT3-210ENST00000540090 VPREB1P12018 145 aa11.34□□□□□ -0.59
LPCAT3-210ENST00000540090 ASB16-AS1Q495Z4 193 aa11.34□□□□□ -0.59
LPCAT3-210ENST00000540090 CST9LQ9H4G1 147 aa11.34□□□□□ -0.59
LPCAT3-210ENST00000540090 ATP5LO75964 103 aa11.33□□□□□ -0.6
LPCAT3-210ENST00000540090 LINC01547P58512 204 aaPredicted RBP11.33□□□□□ -0.6
LPCAT3-210ENST00000540090 LINC00337Q8N6G1 96 aa11.33□□□□□ -0.6
LPCAT3-210ENST00000540090 GNB1LQ9BYB4 327 aa11.33□□□□□ -0.6
LPCAT3-210ENST00000540090 MT-ND4LP03901 98 aa11.32□□□□□ -0.6
LPCAT3-210ENST00000540090 PFN2P35080 140 aa11.32□□□□□ -0.6
LPCAT3-210ENST00000540090 KRTAP13-3Q3SY46 172 aa11.32□□□□□ -0.6
LPCAT3-210ENST00000540090 CBLN2Q8IUK8 224 aa11.32□□□□□ -0.6
LPCAT3-210ENST00000540090 MRPL18Q9H0U6 180 aaKnown RBP11.32□□□□□ -0.6
LPCAT3-210ENST00000540090 SND1-IT1Q9HBX3 110 aa11.31□□□□□ -0.6
LPCAT3-210ENST00000540090 RPL24P83731 157 aaKnown RBP11.3□□□□□ -0.6
LPCAT3-210ENST00000540090 LINC01549A6NIU2 74 aa11.29□□□□□ -0.6
LPCAT3-210ENST00000540090 H3BRM9 83 aa11.28□□□□□ -0.6
LPCAT3-210ENST00000540090 PMVKQ15126 192 aa11.28□□□□□ -0.6
LPCAT3-210ENST00000540090 KIAA1644Q3SXP7 199 aa11.28□□□□□ -0.6
LPCAT3-210ENST00000540090 C4orf48Q5BLP8 95 aa11.28□□□□□ -0.6
LPCAT3-210ENST00000540090 KRTAP4-1Q9BYQ7 146 aa11.28□□□□□ -0.6
LPCAT3-210ENST00000540090 SPRR4Q96PI1 79 aa11.27□□□□□ -0.61
LPCAT3-210ENST00000540090 HIGD2AQ9BW72 106 aa11.27□□□□□ -0.61
LPCAT3-210ENST00000540090 IGLV5-39A0A0G2JS06 123 aa11.26□□□□□ -0.61
LPCAT3-210ENST00000540090 LINC01546A6NGU7 62 aa11.26□□□□□ -0.61
LPCAT3-210ENST00000540090 COX17Q14061 63 aa11.26□□□□□ -0.61
LPCAT3-210ENST00000540090 Q8NDZ9 215 aa11.26□□□□□ -0.61
LPCAT3-210ENST00000540090 CRCT1Q9UGL9 99 aa11.26□□□□□ -0.61
LPCAT3-210ENST00000540090 ERG28Q9UKR5 140 aa11.26□□□□□ -0.61
LPCAT3-210ENST00000540090 RAB14P61106 215 aa11.25□□□□□ -0.61
LPCAT3-210ENST00000540090 FSIP2Q5CZC0 6907 aa11.24□□□□□ -0.61
LPCAT3-210ENST00000540090 SEC61BP60468 96 aaKnown RBP11.23□□□□□ -0.61
LPCAT3-210ENST00000540090 Q8NBF4 154 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms