RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 C15orf56Q8N910 161 aa8.51□□□□□ -1.05
CCDC42-202ENST00000539522 KIAA1109Q2LD37 5005 aa8.51□□□□□ -1.05
CCDC42-202ENST00000539522 IGLV5-39A0A0G2JS06 123 aa8.5□□□□□ -1.05
CCDC42-202ENST00000539522 DDTP30046 118 aa8.5□□□□□ -1.05
CCDC42-202ENST00000539522 C5orf38Q86SI9 138 aa8.5□□□□□ -1.05
CCDC42-202ENST00000539522 IGHV3-64A0A075B6Q5 118 aa8.49□□□□□ -1.05
CCDC42-202ENST00000539522 MYMXA0A1B0GTQ4 84 aa8.49□□□□□ -1.05
CCDC42-202ENST00000539522 SMIM1B2RUZ4 78 aa8.49□□□□□ -1.05
CCDC42-202ENST00000539522 USP17L23D6RBM5 183 aa8.49□□□□□ -1.05
CCDC42-202ENST00000539522 COX7A2LO14548 114 aa8.49□□□□□ -1.05
CCDC42-202ENST00000539522 RYR1P21817 5038 aa8.48□□□□□ -1.05
CCDC42-202ENST00000539522 SLPIP03973 132 aa8.48□□□□□ -1.05
CCDC42-202ENST00000539522 ZNF815PA8K554 130 aa8.47□□□□□ -1.05
CCDC42-202ENST00000539522 MALP21145 153 aa8.47□□□□□ -1.05
CCDC42-202ENST00000539522 HNRNPA3P51991 378 aaKnown RBP8.47□□□□□ -1.05
CCDC42-202ENST00000539522 APOMO95445 188 aa8.46□□□□□ -1.06
CCDC42-202ENST00000539522 TSPEAR-AS2P59090 65 aa8.46□□□□□ -1.06
CCDC42-202ENST00000539522 TTTY13Q9BZ97 58 aa8.46□□□□□ -1.06
CCDC42-202ENST00000539522 HIGD1BQ9P298 99 aa8.46□□□□□ -1.06
CCDC42-202ENST00000539522 HSPG2P98160 4391 aa8.45□□□□□ -1.06
CCDC42-202ENST00000539522 COX7B2Q8TF08 81 aa8.45□□□□□ -1.06
CCDC42-202ENST00000539522 NDUFA12Q9UI09 145 aa8.45□□□□□ -1.06
CCDC42-202ENST00000539522 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.44□□□□□ -1.06
CCDC42-202ENST00000539522 C6orf226Q5I0X4 101 aa8.44□□□□□ -1.06
CCDC42-202ENST00000539522 CFAP161Q6P656 301 aa8.44□□□□□ -1.06
CCDC42-202ENST00000539522 NDUFA1O15239 70 aa8.43□□□□□ -1.06
CCDC42-202ENST00000539522 PRSS2P07478 247 aa8.43□□□□□ -1.06
CCDC42-202ENST00000539522 KRTAP10-1P60331 282 aa8.43□□□□□ -1.06
CCDC42-202ENST00000539522 CTAG1AP78358 180 aa8.43□□□□□ -1.06
CCDC42-202ENST00000539522 LINC01620Q4KN68 170 aa8.43□□□□□ -1.06
CCDC42-202ENST00000539522 C14orf177Q52M58 125 aa8.43□□□□□ -1.06
CCDC42-202ENST00000539522 SFTA2Q6UW10 78 aa8.43□□□□□ -1.06
CCDC42-202ENST00000539522 SCGB1D4Q6XE38 83 aa8.43□□□□□ -1.06
CCDC42-202ENST00000539522 C2orf91Q6ZV80 131 aa8.43□□□□□ -1.06
CCDC42-202ENST00000539522 Q8IZM0 81 aa8.43□□□□□ -1.06
CCDC42-202ENST00000539522 LINC00526Q96FQ7 95 aa8.43□□□□□ -1.06
CCDC42-202ENST00000539522 TOMM7Q9P0U1 55 aa8.43□□□□□ -1.06
CCDC42-202ENST00000539522 GVQW2A0A096LPI5 108 aaPredicted RBP8.42□□□□□ -1.06
CCDC42-202ENST00000539522 EREGO14944 169 aa8.42□□□□□ -1.06
CCDC42-202ENST00000539522 HERV-K104P63124 156 aa8.42□□□□□ -1.06
CCDC42-202ENST00000539522 HIGD2BQ4VC39 106 aa8.42□□□□□ -1.06
CCDC42-202ENST00000539522 ORAOV1Q8WV07 137 aa8.42□□□□□ -1.06
CCDC42-202ENST00000539522 HERC2O95714 4834 aa8.41□□□□□ -1.06
CCDC42-202ENST00000539522 KRTAP17-1Q9BYP8 105 aa8.41□□□□□ -1.06
CCDC42-202ENST00000539522 PGPEP1Q9NXJ5 209 aa8.41□□□□□ -1.06
CCDC42-202ENST00000539522 TP73-AS1Q9UF72 201 aa8.41□□□□□ -1.06
CCDC42-202ENST00000539522 A0A0J9YXY3 114 aa8.4□□□□□ -1.06
CCDC42-202ENST00000539522 LINC00587B1AMM8 73 aa8.4□□□□□ -1.06
CCDC42-202ENST00000539522 CIRBPQ14011 172 aaKnown RBP8.4□□□□□ -1.06
CCDC42-202ENST00000539522 KIAA0087Q14695 138 aa8.4□□□□□ -1.06
CCDC42-202ENST00000539522 TAL2Q16559 108 aa8.4□□□□□ -1.06
CCDC42-202ENST00000539522 ZNF625Q96I27 306 aaPredicted RBP8.4□□□□□ -1.06
CCDC42-202ENST00000539522 IGLV5-52A0A0A0MRZ9 124 aa8.39□□□□□ -1.07
CCDC42-202ENST00000539522 C16orf90A8MZG2 172 aa8.39□□□□□ -1.07
CCDC42-202ENST00000539522 TIMM17BO60830 172 aa8.39□□□□□ -1.07
CCDC42-202ENST00000539522 CXCL5P42830 114 aa8.39□□□□□ -1.07
CCDC42-202ENST00000539522 CKS1BP61024 79 aa8.39□□□□□ -1.07
CCDC42-202ENST00000539522 CNBPP62633 177 aaKnown RBP8.39□□□□□ -1.07
CCDC42-202ENST00000539522 F8WDY8 70 aa8.38□□□□□ -1.07
CCDC42-202ENST00000539522 SPAG11BQ08648 103 aa8.38□□□□□ -1.07
CCDC42-202ENST00000539522 HSD52Q0P140 79 aa8.38□□□□□ -1.07
CCDC42-202ENST00000539522 SRSF9Q13242 221 aaKnown RBP eCLIP8.38□□□□□ -1.07
CCDC42-202ENST00000539522 SPANXB1Q9NS25 103 aaPredicted RBP8.38□□□□□ -1.07
CCDC42-202ENST00000539522 FAM30AQ9NZY2 134 aa8.38□□□□□ -1.07
CCDC42-202ENST00000539522 TMEM238C9JI98 176 aa8.37□□□□□ -1.07
CCDC42-202ENST00000539522 ZNF561-AS1K7EIQ3 104 aa8.37□□□□□ -1.07
CCDC42-202ENST00000539522 M0R143 59 aa8.37□□□□□ -1.07
CCDC42-202ENST00000539522 Q6ZVH6 145 aa8.37□□□□□ -1.07
CCDC42-202ENST00000539522 HIST1H4GQ99525 98 aa8.37□□□□□ -1.07
CCDC42-202ENST00000539522 FAT1Q14517 4588 aa8.37□□□□□ -1.07
CCDC42-202ENST00000539522 PANO1I0J062 215 aa8.36□□□□□ -1.07
CCDC42-202ENST00000539522 GCSHP23434 173 aa8.36□□□□□ -1.07
CCDC42-202ENST00000539522 C9orf163Q8N9P6 203 aa8.36□□□□□ -1.07
CCDC42-202ENST00000539522 C10orf25Q5T742 122 aa8.35□□□□□ -1.07
CCDC42-202ENST00000539522 C2orf48Q96LS8 159 aa8.35□□□□□ -1.07
CCDC42-202ENST00000539522 HINT1P49773 126 aaPredicted RBP8.34□□□□□ -1.07
CCDC42-202ENST00000539522 XGP55808 180 aa8.34□□□□□ -1.07
CCDC42-202ENST00000539522 MEIG1Q5JSS6 88 aa8.34□□□□□ -1.07
CCDC42-202ENST00000539522 C2orf82Q6UX34 121 aa8.34□□□□□ -1.07
CCDC42-202ENST00000539522 SDIM1Q6ZPB5 146 aa8.34□□□□□ -1.07
CCDC42-202ENST00000539522 Q6ZRU5 148 aa8.34□□□□□ -1.07
CCDC42-202ENST00000539522 Q6ZSA8 131 aa8.34□□□□□ -1.07
CCDC42-202ENST00000539522 CEND1Q8N111 149 aa8.34□□□□□ -1.07
CCDC42-202ENST00000539522 LITAFQ99732 161 aa8.34□□□□□ -1.07
CCDC42-202ENST00000539522 SPANXDQ9BXN6 97 aa8.34□□□□□ -1.07
CCDC42-202ENST00000539522 SPANXCQ9NY87 97 aa8.34□□□□□ -1.07
CCDC42-202ENST00000539522 IFITM1P13164 125 aa8.33□□□□□ -1.08
CCDC42-202ENST00000539522 COX17Q14061 63 aa8.33□□□□□ -1.08
CCDC42-202ENST00000539522 BVES-AS1Q5T3Y7 98 aa8.33□□□□□ -1.08
CCDC42-202ENST00000539522 ADAMTSL4-AS1Q5T5F5 129 aa8.33□□□□□ -1.08
CCDC42-202ENST00000539522 COPS9Q8WXC6 57 aa8.33□□□□□ -1.08
CCDC42-202ENST00000539522 CAMK2N2Q96S95 79 aa8.33□□□□□ -1.08
CCDC42-202ENST00000539522 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.32□□□□□ -1.08
CCDC42-202ENST00000539522 SMIM13P0DJ93 91 aa8.32□□□□□ -1.08
CCDC42-202ENST00000539522 LINC00158P58513 81 aa8.32□□□□□ -1.08
CCDC42-202ENST00000539522 HAMPP81172 84 aa8.32□□□□□ -1.08
CCDC42-202ENST00000539522 SYCNQ0VAF6 134 aa8.32□□□□□ -1.08
CCDC42-202ENST00000539522 UNQ6190/PRO20217Q6UXQ8 127 aa8.32□□□□□ -1.08
CCDC42-202ENST00000539522 SNHG12Q9BXW3 62 aa8.32□□□□□ -1.08
CCDC42-202ENST00000539522 ERG28Q9UKR5 140 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms