RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 STHQ8IWL8 128 aa4.63□□□□□ -1.67
USP28-207ENST00000538475 TMEM254Q8TBM7 123 aa4.63□□□□□ -1.67
USP28-207ENST00000538475 BRK1Q8WUW1 75 aa4.63□□□□□ -1.67
USP28-207ENST00000538475 Q9UF83 564 aa4.63□□□□□ -1.67
USP28-207ENST00000538475 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.63□□□□□ -1.678e-9■■■■□ 25.3
USP28-207ENST00000538475 KALRNO60229 2985 aa4.62□□□□□ -1.67
USP28-207ENST00000538475 A0A1B0GUV1 79 aa4.62□□□□□ -1.67
USP28-207ENST00000538475 Q1T7F1 81 aa4.62□□□□□ -1.67
USP28-207ENST00000538475 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.62□□□□□ -1.67
USP28-207ENST00000538475 RMI2Q96E14 147 aa4.62□□□□□ -1.67
USP28-207ENST00000538475 BPESC1Q9GZL8 116 aa4.62□□□□□ -1.67
USP28-207ENST00000538475 TOMM7Q9P0U1 55 aa4.62□□□□□ -1.67
USP28-207ENST00000538475 PKIGQ9Y2B9 76 aa4.62□□□□□ -1.67
USP28-207ENST00000538475 A0A096LNT2 108 aa4.61□□□□□ -1.67
USP28-207ENST00000538475 TRAV10A0A0B4J240 114 aa4.61□□□□□ -1.67
USP28-207ENST00000538475 A0A0U1RQV1 116 aa4.61□□□□□ -1.67
USP28-207ENST00000538475 LYRM9A8MSI8 78 aa4.61□□□□□ -1.67
USP28-207ENST00000538475 PRYO14603 147 aa4.61□□□□□ -1.67
USP28-207ENST00000538475 PLA2G2AP14555 144 aa4.61□□□□□ -1.67
USP28-207ENST00000538475 FUSP35637 526 aaKnown RBP eCLIP4.61□□□□□ -1.67
USP28-207ENST00000538475 HAMPP81172 84 aa4.61□□□□□ -1.67
USP28-207ENST00000538475 MAP6D1Q9H9H5 199 aa4.61□□□□□ -1.67
USP28-207ENST00000538475 SPEGQ15772 3267 aa4.61□□□□□ -1.67
USP28-207ENST00000538475 SPTBN5Q9NRC6 3674 aaKnown RBP4.61□□□□□ -1.67
USP28-207ENST00000538475 PTPRZ1P23471 2315 aaPredicted RBP4.61□□□□□ -1.67
USP28-207ENST00000538475 SPTAN1Q13813 2472 aaKnown RBP4.6□□□□□ -1.67
USP28-207ENST00000538475 TRGV1A0A0A0MS02 117 aa4.6□□□□□ -1.67
USP28-207ENST00000538475 TRBV6-8A0A0A6YYG3 113 aa4.6□□□□□ -1.67
USP28-207ENST00000538475 LOC100131303A0A0U1RQF7 123 aa4.6□□□□□ -1.67
USP28-207ENST00000538475 LINC00959A0A1B0GUT2 108 aa4.6□□□□□ -1.67
USP28-207ENST00000538475 BPY2O14599 106 aa4.6□□□□□ -1.67
USP28-207ENST00000538475 HTN1P15515 57 aa4.6□□□□□ -1.67
USP28-207ENST00000538475 PMAIP1Q13794 54 aa4.6□□□□□ -1.67
USP28-207ENST00000538475 LY6EQ16553 131 aa4.6□□□□□ -1.67
USP28-207ENST00000538475 WFDC9Q8NEX5 89 aa4.6□□□□□ -1.67
USP28-207ENST00000538475 WFDC11Q8NEX6 87 aa4.6□□□□□ -1.67
USP28-207ENST00000538475 C16orf74Q96GX8 76 aa4.6□□□□□ -1.67
USP28-207ENST00000538475 SNURFQ9Y675 71 aa4.6□□□□□ -1.67
USP28-207ENST00000538475 WDFY3Q8IZQ1 3526 aa4.59□□□□□ -1.67
USP28-207ENST00000538475 LCE6AA0A183 80 aa4.59□□□□□ -1.67
USP28-207ENST00000538475 EDN2P20800 178 aa4.59□□□□□ -1.67
USP28-207ENST00000538475 COX7BP24311 80 aa4.59□□□□□ -1.67
USP28-207ENST00000538475 ADORA2A-AS1P86434 159 aa4.59□□□□□ -1.67
USP28-207ENST00000538475 Q6ZTC4 211 aa4.59□□□□□ -1.67
USP28-207ENST00000538475 OCR1Q9BZK8 76 aa4.59□□□□□ -1.67
USP28-207ENST00000538475 SPTA1P02549 2419 aa4.58□□□□□ -1.68
USP28-207ENST00000538475 IGHV4-61A0A0C4DH41 118 aa4.58□□□□□ -1.68
USP28-207ENST00000538475 GNLYP22749 145 aa4.58□□□□□ -1.68
USP28-207ENST00000538475 DSCR9P59020 149 aa4.58□□□□□ -1.68
USP28-207ENST00000538475 C6orf99Q4VX62 202 aa4.58□□□□□ -1.68
USP28-207ENST00000538475 BRD3OSQ6XYD6 125 aa4.58□□□□□ -1.68
USP28-207ENST00000538475 Q6ZTI0 123 aa4.58□□□□□ -1.68
USP28-207ENST00000538475 TM2D3Q9BRN9 247 aa4.58□□□□□ -1.68
USP28-207ENST00000538475 AKAP6Q13023 2319 aa4.58□□□□□ -1.68
USP28-207ENST00000538475 IGLV6-57P01721 117 aa4.57□□□□□ -1.68
USP28-207ENST00000538475 MSMBP08118 114 aa4.57□□□□□ -1.68
USP28-207ENST00000538475 CD164Q04900 197 aa4.57□□□□□ -1.68
USP28-207ENST00000538475 SPATA3Q8NHX4 192 aa4.57□□□□□ -1.68
USP28-207ENST00000538475 LINC00474Q9P2X8 69 aa4.57□□□□□ -1.68
USP28-207ENST00000538475 FREM2Q5SZK8 3169 aa4.57□□□□□ -1.68
USP28-207ENST00000538475 PRUNE2Q8WUY3 3088 aa4.57□□□□□ -1.68
USP28-207ENST00000538475 CFAP47Q6ZTR5 3102 aa4.56□□□□□ -1.68
USP28-207ENST00000538475 hDV103S1A0JD37 113 aa4.56□□□□□ -1.68
USP28-207ENST00000538475 B4DSR2 109 aa4.56□□□□□ -1.68
USP28-207ENST00000538475 KIAA0087Q14695 138 aa4.56□□□□□ -1.68
USP28-207ENST00000538475 CD164L2Q6UWJ8 174 aa4.56□□□□□ -1.68
USP28-207ENST00000538475 C4orf3Q8WVX3 66 aa4.56□□□□□ -1.68
USP28-207ENST00000538475 CYP4F30PQ9H0H9 118 aa4.56□□□□□ -1.68
USP28-207ENST00000538475 TACC2O95359 2948 aa4.56□□□□□ -1.68
USP28-207ENST00000538475 IGLV4-60A0A075B6I1 120 aa4.55□□□□□ -1.68
USP28-207ENST00000538475 GVQW2A0A096LPI5 108 aaPredicted RBP4.55□□□□□ -1.68
USP28-207ENST00000538475 A0A0J9YWU9 116 aa4.55□□□□□ -1.68
USP28-207ENST00000538475 NDUFB1O75438 58 aa4.55□□□□□ -1.68
USP28-207ENST00000538475 IGHV4-30-4P0DP06 118 aa4.55□□□□□ -1.68
USP28-207ENST00000538475 DAD1P61803 113 aa4.55□□□□□ -1.68
USP28-207ENST00000538475 CELA1Q9UNI1 258 aa4.55□□□□□ -1.68
USP28-207ENST00000538475 CREBBPQ92793 2442 aa4.54□□□□□ -1.68
USP28-207ENST00000538475 ANKRD11Q6UB99 2663 aaPredicted RBP4.54□□□□□ -1.68
USP28-207ENST00000538475 TRGV4A0A0C4DH28 118 aa4.54□□□□□ -1.68
USP28-207ENST00000538475 DNAJC9-AS1A6NH13 148 aa4.54□□□□□ -1.68
USP28-207ENST00000538475 DIRC1Q969H9 104 aa4.54□□□□□ -1.68
USP28-207ENST00000538475 TRGV2A0A075B6R0 118 aa4.53□□□□□ -1.68
USP28-207ENST00000538475 A0A1W2PPR1 153 aa4.53□□□□□ -1.68
USP28-207ENST00000538475 IGKV4-1P06312 121 aa4.53□□□□□ -1.68
USP28-207ENST00000538475 Q6ZQY7 126 aa4.53□□□□□ -1.68
USP28-207ENST00000538475 TLN1Q9Y490 2541 aaKnown RBP4.53□□□□□ -1.68
USP28-207ENST00000538475 HIVEP3Q5T1R4 2406 aa4.53□□□□□ -1.68
USP28-207ENST00000538475 ELOF1P60002 83 aaKnown RBP4.52□□□□□ -1.69
USP28-207ENST00000538475 ODF3L2Q3SX64 289 aa4.52□□□□□ -1.69
USP28-207ENST00000538475 ZNF843Q8N446 348 aa4.52□□□□□ -1.69
USP28-207ENST00000538475 LINC00612Q8N6U2 182 aa4.52□□□□□ -1.69
USP28-207ENST00000538475 ZNF702PQ9H963 129 aa4.52□□□□□ -1.69
USP28-207ENST00000538475 NOP10Q9NPE3 64 aaKnown RBP4.52□□□□□ -1.69
USP28-207ENST00000538475 CELSR3Q9NYQ7 3312 aa4.51□□□□□ -1.69
USP28-207ENST00000538475 CSPG4Q6UVK1 2322 aa4.51□□□□□ -1.69
USP28-207ENST00000538475 C19orf84I3L1E1 186 aa4.51□□□□□ -1.69
USP28-207ENST00000538475 HIGD2BQ4VC39 106 aa4.51□□□□□ -1.69
USP28-207ENST00000538475 MPLKIPQ8TAP9 179 aa4.51□□□□□ -1.69
USP28-207ENST00000538475 ZCCHC13Q8WW36 166 aaKnown RBP4.51□□□□□ -1.69
USP28-207ENST00000538475 CR1P17927 2039 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms