RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710	YPEL1	O60688	119 aa		0.97	□□□□□ -2.25
PRKDC-208	ENST00000536710	APOC1	P02654	83 aa		0.97	□□□□□ -2.25
PRKDC-208	ENST00000536710	IFI6	P09912	130 aa		0.97	□□□□□ -2.25
PRKDC-208	ENST00000536710	NCS1	P62166	190 aa		0.97	□□□□□ -2.25
PRKDC-208	ENST00000536710	SARNP	P82979	210 aa	Known RBP	0.97	□□□□□ -2.25
PRKDC-208	ENST00000536710	SLC48A1	Q6P1K1	146 aa		0.97	□□□□□ -2.25
PRKDC-208	ENST00000536710	COMMD6	Q7Z4G1	85 aa		0.97	□□□□□ -2.25
PRKDC-208	ENST00000536710	MMGT1	Q8N4V1	131 aa		0.97	□□□□□ -2.25
PRKDC-208	ENST00000536710	ATP6V0E2	Q8NHE4	81 aa		0.97	□□□□□ -2.25
PRKDC-208	ENST00000536710	ABCA1	O95477	2261 aa		0.97	□□□□□ -2.25
PRKDC-208	ENST00000536710	CAD	P27708	2225 aa		0.97	□□□□□ -2.25
PRKDC-208	ENST00000536710	USF3	Q68DE3	2245 aa		0.97	□□□□□ -2.25
PRKDC-208	ENST00000536710	CSPG4	Q6UVK1	2322 aa		0.97	□□□□□ -2.25
PRKDC-208	ENST00000536710	JMJD1C	Q15652	2540 aa		0.96	□□□□□ -2.26
PRKDC-208	ENST00000536710	KMT2C	Q8NEZ4	4911 aa	Known RBP	0.96	□□□□□ -2.26
PRKDC-208	ENST00000536710	HIST1H1A	Q02539	215 aa	Predicted RBP	0.96	□□□□□ -2.26
PRKDC-208	ENST00000536710	NCMAP	Q5T1S8	102 aa		0.96	□□□□□ -2.26
PRKDC-208	ENST00000536710	RPS27L	Q71UM5	84 aa	Known RBP	0.96	□□□□□ -2.26
PRKDC-208	ENST00000536710	CSMD3	Q7Z407	3707 aa		0.96	□□□□□ -2.26
PRKDC-208	ENST00000536710	LYST	Q99698	3801 aa		0.96	□□□□□ -2.26
PRKDC-208	ENST00000536710	RYR3	Q15413	4870 aa		0.95	□□□□□ -2.26
PRKDC-208	ENST00000536710	MGAM2	Q2M2H8	2515 aa		0.95	□□□□□ -2.26
PRKDC-208	ENST00000536710	UQCRH	P07919	91 aa		0.95	□□□□□ -2.26
PRKDC-208	ENST00000536710	SPINK7	P58062	85 aa		0.95	□□□□□ -2.26
PRKDC-208	ENST00000536710	SCIMP	Q6UWF3	145 aa		0.95	□□□□□ -2.26
PRKDC-208	ENST00000536710	DYNLRB2	Q8TF09	96 aa		0.95	□□□□□ -2.26
PRKDC-208	ENST00000536710	SMIM3	Q9BZL3	60 aa		0.95	□□□□□ -2.26
PRKDC-208	ENST00000536710	LSM2	Q9Y333	95 aa	Known RBP	0.95	□□□□□ -2.26
PRKDC-208	ENST00000536710	DOCK11	Q5JSL3	2073 aa		0.95	□□□□□ -2.26
PRKDC-208	ENST00000536710	MUC16	Q8WXI7	14507 aa		0.95	□□□□□ -2.26
PRKDC-208	ENST00000536710	DNAH7	Q8WXX0	4024 aa		0.94	□□□□□ -2.26
PRKDC-208	ENST00000536710	HMGN2	P05204	90 aa	Known RBP	0.94	□□□□□ -2.26
PRKDC-208	ENST00000536710	KRTAP5-10	Q6L8G5	202 aa		0.94	□□□□□ -2.26
PRKDC-208	ENST00000536710	CTAGE3P	Q8IX95	158 aa		0.94	□□□□□ -2.26
PRKDC-208	ENST00000536710	SDF2	Q99470	211 aa		0.94	□□□□□ -2.26
PRKDC-208	ENST00000536710	TRAV2	A0A0B4J234	112 aa		0.93	□□□□□ -2.26
PRKDC-208	ENST00000536710		H3BQF6	201 aa		0.93	□□□□□ -2.26
PRKDC-208	ENST00000536710		J3QLW9	94 aa		0.93	□□□□□ -2.26
PRKDC-208	ENST00000536710	HMGN4	O00479	90 aa		0.93	□□□□□ -2.26
PRKDC-208	ENST00000536710	TSPAN19	P0C672	248 aa		0.93	□□□□□ -2.26
PRKDC-208	ENST00000536710	GNG11	P61952	73 aa		0.93	□□□□□ -2.26
PRKDC-208	ENST00000536710	RPL38	P63173	70 aa	Known RBP	0.93	□□□□□ -2.26
PRKDC-208	ENST00000536710	KLKP1	Q107X0	134 aa		0.93	□□□□□ -2.26
PRKDC-208	ENST00000536710	WHAMMP3	Q1A5X7	153 aa		0.93	□□□□□ -2.26
PRKDC-208	ENST00000536710	ATP11AUN	Q6ZP68	121 aa		0.93	□□□□□ -2.26
PRKDC-208	ENST00000536710	MAFIP	Q8WZ33	124 aa		0.93	□□□□□ -2.26
PRKDC-208	ENST00000536710	ANP32B	Q92688	251 aa	Known RBP	0.93	□□□□□ -2.26
PRKDC-208	ENST00000536710	WFDC6	Q9BQY6	131 aa		0.93	□□□□□ -2.26
PRKDC-208	ENST00000536710	LINC00470	Q9BZP3	86 aa		0.93	□□□□□ -2.26
PRKDC-208	ENST00000536710	BPESC1	Q9GZL8	116 aa		0.93	□□□□□ -2.26
PRKDC-208	ENST00000536710	RYR2	Q92736	4967 aa		0.92	□□□□□ -2.26
PRKDC-208	ENST00000536710	PCLO	Q9Y6V0	5065 aa		0.92	□□□□□ -2.26
PRKDC-208	ENST00000536710	FRAS1	Q86XX4	4008 aa		0.92	□□□□□ -2.26
PRKDC-208	ENST00000536710	HYDIN	Q4G0P3	5121 aa		0.92	□□□□□ -2.26
PRKDC-208	ENST00000536710	ATP6V1G2-DDX39B	F2Z307	99 aa		0.92	□□□□□ -2.26
PRKDC-208	ENST00000536710		J3QR89	54 aa		0.92	□□□□□ -2.26
PRKDC-208	ENST00000536710	LINC00032	P0C843	101 aa		0.92	□□□□□ -2.26
PRKDC-208	ENST00000536710	RPL37	P61927	97 aa	Known RBP	0.92	□□□□□ -2.26
PRKDC-208	ENST00000536710	EMX2	Q04743	252 aa		0.92	□□□□□ -2.26
PRKDC-208	ENST00000536710	C10orf82	Q8WW14	230 aa		0.92	□□□□□ -2.26
PRKDC-208	ENST00000536710	PPP3R2	Q96LZ3	170 aa		0.92	□□□□□ -2.26
PRKDC-208	ENST00000536710	FAM103A1	Q9BTL3	118 aa	Known RBP	0.92	□□□□□ -2.26
PRKDC-208	ENST00000536710	TMEM14B	Q9NUH8	114 aa		0.92	□□□□□ -2.26
PRKDC-208	ENST00000536710	FAIM	Q9NVQ4	179 aa		0.92	□□□□□ -2.26
PRKDC-208	ENST00000536710	NBEAL2	Q6ZNJ1	2754 aa		0.92	□□□□□ -2.26
PRKDC-208	ENST00000536710	EPPK1	P58107	5090 aa	Known RBP	0.92	□□□□□ -2.26
PRKDC-208	ENST00000536710	WNK2	Q9Y3S1	2297 aa		0.91	□□□□□ -2.26
PRKDC-208	ENST00000536710	TENM3	Q9P273	2699 aa		0.91	□□□□□ -2.26
PRKDC-208	ENST00000536710	LOC105371267	A0A1B0GV96	52 aa		0.91	□□□□□ -2.26
PRKDC-208	ENST00000536710		A0A1B0GWA3	101 aa		0.91	□□□□□ -2.26
PRKDC-208	ENST00000536710	LYNX1	G3V0Z9	82 aa		0.91	□□□□□ -2.26
PRKDC-208	ENST00000536710		M0R2Z0	102 aa		0.91	□□□□□ -2.26
PRKDC-208	ENST00000536710	MRPL33	O75394	65 aa	Known RBP	0.91	□□□□□ -2.26
PRKDC-208	ENST00000536710	SLC25A6	P12236	298 aa		0.91	□□□□□ -2.26
PRKDC-208	ENST00000536710	UBA52	P62987	128 aa	Known RBP	0.91	□□□□□ -2.26
PRKDC-208	ENST00000536710	C10orf128	Q5T292	105 aa		0.91	□□□□□ -2.26
PRKDC-208	ENST00000536710	C4orf33	Q8N1A6	199 aa		0.91	□□□□□ -2.26
PRKDC-208	ENST00000536710	DEFB108B	Q8NET1	73 aa		0.91	□□□□□ -2.26
PRKDC-208	ENST00000536710	TMEM141	Q96I45	108 aa		0.91	□□□□□ -2.26
PRKDC-208	ENST00000536710	STARD9	Q9P2P6	4700 aa		0.91	□□□□□ -2.26
PRKDC-208	ENST00000536710	DNAH9	Q9NYC9	4486 aa		0.91	□□□□□ -2.26
PRKDC-208	ENST00000536710	WNK1	Q9H4A3	2382 aa		0.9	□□□□□ -2.27
PRKDC-208	ENST00000536710	TENM2	Q9NT68	2774 aa		0.9	□□□□□ -2.27
PRKDC-208	ENST00000536710	TEX49	A0A1B0GTD5	131 aa		0.9	□□□□□ -2.27
PRKDC-208	ENST00000536710		M0R2P5	195 aa		0.9	□□□□□ -2.27
PRKDC-208	ENST00000536710	IGLC6	P0CF74	106 aa		0.9	□□□□□ -2.27
PRKDC-208	ENST00000536710	CCL8	P80075	99 aa		0.9	□□□□□ -2.27
PRKDC-208	ENST00000536710	DPY30	Q9C005	99 aa		0.9	□□□□□ -2.27
PRKDC-208	ENST00000536710	TPT1P8	Q9HAU6	139 aa		0.9	□□□□□ -2.27
PRKDC-208	ENST00000536710	COA4	Q9NYJ1	87 aa		0.9	□□□□□ -2.27
PRKDC-208	ENST00000536710	DYNC2H1	Q8NCM8	4307 aa	Known RBP	0.9	□□□□□ -2.27
PRKDC-208	ENST00000536710	HECTD4	Q9Y4D8	3996 aa		0.89	□□□□□ -2.27
PRKDC-208	ENST00000536710	DNAH1	Q9P2D7	4330 aa		0.89	□□□□□ -2.27
PRKDC-208	ENST00000536710	TRBV20-1	A0A075B6N2	111 aa		0.89	□□□□□ -2.27
PRKDC-208	ENST00000536710	TCRBV3S1	A0A5B6	114 aa		0.89	□□□□□ -2.27
PRKDC-208	ENST00000536710	IQCF6	A8MYZ5	107 aa		0.89	□□□□□ -2.27
PRKDC-208	ENST00000536710	S100A3	P33764	101 aa		0.89	□□□□□ -2.27
PRKDC-208	ENST00000536710	PPP1R1C	Q8WVI7	109 aa		0.89	□□□□□ -2.27
PRKDC-208	ENST00000536710	DYNLRB1	Q9NP97	96 aa		0.89	□□□□□ -2.27
PRKDC-208	ENST00000536710	CCDC167	Q9P0B6	97 aa		0.89	□□□□□ -2.27

Retrieved 100 of 20,778 RNA–protein pairs in 896.8 ms