RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647		F8VRH5	84 aa		7.43	□□□□□ -1.22
CTNND1-238	ENST00000534647	DDT	P30046	118 aa		7.43	□□□□□ -1.22
CTNND1-238	ENST00000534647	PMVK	Q15126	192 aa		7.43	□□□□□ -1.22
CTNND1-238	ENST00000534647	MIA	Q16674	131 aa		7.43	□□□□□ -1.22
CTNND1-238	ENST00000534647	SPANXA1	Q9NS26	97 aa		7.43	□□□□□ -1.22
CTNND1-238	ENST00000534647	CRP	P02741	224 aa		7.42	□□□□□ -1.22
CTNND1-238	ENST00000534647	PRR34	Q9NV39	138 aa		7.42	□□□□□ -1.22
CTNND1-238	ENST00000534647	MRPL35	Q9NZE8	188 aa	Known RBP	7.42	□□□□□ -1.22
CTNND1-238	ENST00000534647	UQCR10	Q9UDW1	63 aa		7.42	□□□□□ -1.22
CTNND1-238	ENST00000534647	PYGO1	Q9Y3Y4	419 aa		7.42	□□□□□ -1.22
CTNND1-238	ENST00000534647	TRBV25-1	A0A075B6N4	114 aa		7.41	□□□□□ -1.22
CTNND1-238	ENST00000534647	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	7.41	□□□□□ -1.22
CTNND1-238	ENST00000534647	IGKV2-29	A2NJV5	120 aa	Predicted RBP	7.41	□□□□□ -1.22
CTNND1-238	ENST00000534647	UBE2L6	O14933	153 aa		7.41	□□□□□ -1.22
CTNND1-238	ENST00000534647	HNRNPA3	P51991	378 aa	Known RBP	7.41	□□□□□ -1.22
CTNND1-238	ENST00000534647	MPV17L2	Q567V2	206 aa		7.41	□□□□□ -1.22
CTNND1-238	ENST00000534647	C6orf226	Q5I0X4	101 aa		7.41	□□□□□ -1.22
CTNND1-238	ENST00000534647	KRTAP26-1	Q6PEX3	210 aa		7.41	□□□□□ -1.22
CTNND1-238	ENST00000534647	SDIM1	Q6ZPB5	146 aa		7.41	□□□□□ -1.22
CTNND1-238	ENST00000534647	MIEN1	Q9BRT3	115 aa		7.41	□□□□□ -1.22
CTNND1-238	ENST00000534647	TMEM243	Q9BU79	118 aa		7.41	□□□□□ -1.22
CTNND1-238	ENST00000534647	HMCN2	Q8NDA2	5059 aa		7.41	□□□□□ -1.22
CTNND1-238	ENST00000534647	IGLV4-3	A0A075B6K6	122 aa		7.4	□□□□□ -1.22
CTNND1-238	ENST00000534647	ANG	P03950	147 aa	Known RBP	7.4	□□□□□ -1.22
CTNND1-238	ENST00000534647	MT1HL1	P0DM35	61 aa		7.4	□□□□□ -1.22
CTNND1-238	ENST00000534647	IGLC3	P0DOY3	106 aa		7.4	□□□□□ -1.22
CTNND1-238	ENST00000534647	CIRBP	Q14011	172 aa	Known RBP	7.4	□□□□□ -1.22
CTNND1-238	ENST00000534647	AMMECR1L	Q6DCA0	310 aa		7.4	□□□□□ -1.22
CTNND1-238	ENST00000534647		Q6ZRU5	148 aa		7.4	□□□□□ -1.22
CTNND1-238	ENST00000534647	TIMM21	Q9BVV7	248 aa		7.4	□□□□□ -1.22
CTNND1-238	ENST00000534647	CST9L	Q9H4G1	147 aa		7.4	□□□□□ -1.22
CTNND1-238	ENST00000534647		H7C423	109 aa		7.39	□□□□□ -1.23
CTNND1-238	ENST00000534647	SLC25A34	Q6PIV7	304 aa		7.39	□□□□□ -1.23
CTNND1-238	ENST00000534647	NTM-AS1	Q6ZSK4	140 aa		7.39	□□□□□ -1.23
CTNND1-238	ENST00000534647	STPG4	Q8N801	248 aa		7.39	□□□□□ -1.23
CTNND1-238	ENST00000534647	C14orf144	Q96I85	54 aa		7.39	□□□□□ -1.23
CTNND1-238	ENST00000534647	TMEM101	Q96IK0	257 aa		7.39	□□□□□ -1.23
CTNND1-238	ENST00000534647	C2orf88	Q9BSF0	95 aa		7.39	□□□□□ -1.23
CTNND1-238	ENST00000534647	CHCHD5	Q9BSY4	110 aa		7.39	□□□□□ -1.23
CTNND1-238	ENST00000534647	UBE2D4	Q9Y2X8	147 aa		7.39	□□□□□ -1.23
CTNND1-238	ENST00000534647	LINC00587	B1AMM8	73 aa		7.38	□□□□□ -1.23
CTNND1-238	ENST00000534647	HERVK_113	P61574	105 aa		7.38	□□□□□ -1.23
CTNND1-238	ENST00000534647	CNBP	P62633	177 aa	Known RBP	7.38	□□□□□ -1.23
CTNND1-238	ENST00000534647	ZC2HC1B	Q5TFG8	222 aa		7.38	□□□□□ -1.23
CTNND1-238	ENST00000534647	OPRPN	Q99935	248 aa	Predicted RBP	7.38	□□□□□ -1.23
CTNND1-238	ENST00000534647	PANO1	I0J062	215 aa		7.37	□□□□□ -1.23
CTNND1-238	ENST00000534647	FGF6	P10767	208 aa		7.37	□□□□□ -1.23
CTNND1-238	ENST00000534647	NMU	P48645	174 aa		7.37	□□□□□ -1.23
CTNND1-238	ENST00000534647	RBX1	P62877	108 aa		7.37	□□□□□ -1.23
CTNND1-238	ENST00000534647	MRPS36	P82909	103 aa	Known RBP	7.37	□□□□□ -1.23
CTNND1-238	ENST00000534647	MRPL52	Q86TS9	123 aa	Known RBP	7.37	□□□□□ -1.23
CTNND1-238	ENST00000534647	OR5A1	Q8NGJ0	315 aa		7.37	□□□□□ -1.23
CTNND1-238	ENST00000534647	COX8A	P10176	69 aa		7.36	□□□□□ -1.23
CTNND1-238	ENST00000534647	ZNF25	P17030	456 aa	Predicted RBP	7.36	□□□□□ -1.23
CTNND1-238	ENST00000534647		Q6ZUT4	128 aa		7.36	□□□□□ -1.23
CTNND1-238	ENST00000534647	LINC00269	Q8N2A0	174 aa		7.36	□□□□□ -1.23
CTNND1-238	ENST00000534647	AMELX	Q99217	191 aa		7.36	□□□□□ -1.23
CTNND1-238	ENST00000534647	CSDC2	Q9Y534	153 aa	Known RBP	7.36	□□□□□ -1.23
CTNND1-238	ENST00000534647	IGLV4-69	A0A075B6H9	119 aa		7.35	□□□□□ -1.23
CTNND1-238	ENST00000534647	TRAV8-4	A0A0B4J246	113 aa		7.35	□□□□□ -1.23
CTNND1-238	ENST00000534647	C11orf86	A6NJI1	115 aa		7.35	□□□□□ -1.23
CTNND1-238	ENST00000534647	GAGE6	Q13070	117 aa		7.35	□□□□□ -1.23
CTNND1-238	ENST00000534647	TMEM170B	Q5T4T1	132 aa		7.35	□□□□□ -1.23
CTNND1-238	ENST00000534647		A0A1B0GUV1	79 aa		7.34	□□□□□ -1.23
CTNND1-238	ENST00000534647	RNASE13	Q5GAN3	156 aa	Known RBP	7.34	□□□□□ -1.23
CTNND1-238	ENST00000534647		A0A0J9YXV3	536 aa		7.33	□□□□□ -1.24
CTNND1-238	ENST00000534647	SEC11A	P67812	179 aa		7.33	□□□□□ -1.24
CTNND1-238	ENST00000534647	REG3A	Q06141	175 aa		7.33	□□□□□ -1.24
CTNND1-238	ENST00000534647	UBR4	Q5T4S7	5183 aa		7.33	□□□□□ -1.24
CTNND1-238	ENST00000534647	FAT3	Q8TDW7	4589 aa		7.33	□□□□□ -1.24
CTNND1-238	ENST00000534647	IGHV3-64	A0A075B6Q5	118 aa		7.32	□□□□□ -1.24
CTNND1-238	ENST00000534647	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	7.32	□□□□□ -1.24
CTNND1-238	ENST00000534647	TINCR	A0A1B0GVN0	87 aa		7.32	□□□□□ -1.24
CTNND1-238	ENST00000534647		E9PLD3	99 aa		7.32	□□□□□ -1.24
CTNND1-238	ENST00000534647	DLEU1	O43261	78 aa		7.32	□□□□□ -1.24
CTNND1-238	ENST00000534647	CTAG1A	P78358	180 aa		7.32	□□□□□ -1.24
CTNND1-238	ENST00000534647		A0A087WYN8	130 aa		7.31	□□□□□ -1.24
CTNND1-238	ENST00000534647		H3BRM9	83 aa		7.31	□□□□□ -1.24
CTNND1-238	ENST00000534647		M0R143	59 aa		7.31	□□□□□ -1.24
CTNND1-238	ENST00000534647	SLPI	P03973	132 aa		7.31	□□□□□ -1.24
CTNND1-238	ENST00000534647	ZNF22	P17026	224 aa	Predicted RBP	7.31	□□□□□ -1.24
CTNND1-238	ENST00000534647	CLPSL2	Q6UWE3	100 aa		7.31	□□□□□ -1.24
CTNND1-238	ENST00000534647	BOD1L2	Q8IYS8	172 aa		7.31	□□□□□ -1.24
CTNND1-238	ENST00000534647	SPACA4	Q8TDM5	124 aa		7.31	□□□□□ -1.24
CTNND1-238	ENST00000534647	CDC42SE2	Q9NRR3	84 aa		7.31	□□□□□ -1.24
CTNND1-238	ENST00000534647	PLAC8	Q9NZF1	115 aa		7.31	□□□□□ -1.24
CTNND1-238	ENST00000534647	IGKV2D-26	A0A0A0MRZ7	120 aa		7.3	□□□□□ -1.24
CTNND1-238	ENST00000534647	UBE2D1	P51668	147 aa		7.3	□□□□□ -1.24
CTNND1-238	ENST00000534647	HERVK_113	P63121	156 aa		7.3	□□□□□ -1.24
CTNND1-238	ENST00000534647	PCP2	Q8IVA1	136 aa		7.3	□□□□□ -1.24
CTNND1-238	ENST00000534647	LINC00469	Q8N7U9	141 aa		7.3	□□□□□ -1.24
CTNND1-238	ENST00000534647	FAM104A	Q969W3	186 aa		7.3	□□□□□ -1.24
CTNND1-238	ENST00000534647	DPH3	Q96FX2	82 aa		7.3	□□□□□ -1.24
CTNND1-238	ENST00000534647	IGLV10-54	A0A075B6I4	117 aa		7.29	□□□□□ -1.24
CTNND1-238	ENST00000534647	TRAV13-1	A0A0B4J241	112 aa		7.29	□□□□□ -1.24
CTNND1-238	ENST00000534647	TMEM223	A0PJW6	202 aa		7.29	□□□□□ -1.24
CTNND1-238	ENST00000534647	LGALS3	P17931	250 aa	Known RBP	7.29	□□□□□ -1.24
CTNND1-238	ENST00000534647	PLEKHB2	Q96CS7	222 aa		7.29	□□□□□ -1.24
CTNND1-238	ENST00000534647	IGLV4-60	A0A075B6I1	120 aa		7.28	□□□□□ -1.24
CTNND1-238	ENST00000534647	MYMX	A0A1B0GTQ4	84 aa		7.28	□□□□□ -1.24

Retrieved 100 of 20,778 RNA–protein pairs in 134.1 ms