RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 PTPRSQ13332 1948 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 NRXN3Q9Y4C0 1643 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 REV3LO60673 3130 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 RICTORQ6R327 1708 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 A0A0J9YY99 117 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 TRBV10-1A0A0K0K1A3 114 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 LINC01546A6NGU7 62 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 HIGD1CA8MV81 97 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 IL9P15248 144 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 KRTAP10-1P60331 282 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 CNBPP62633 177 aaKnown RBP1.81□□□□□ -2.12
CD44-229ENST00000528672 DEFB134Q4QY38 66 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 SPANXN5Q5MJ07 72 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 FDCSPQ8NFU4 85 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 OBSCN-AS1Q96MR7 158 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 LINC00846Q9NV44 126 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 ORMDL1Q9P0S3 153 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 LENEPQ9Y5L5 61 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 LHFPL6Q9Y693 200 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 MINOS1-NBL1R4GNA1 71 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 COL11A1P12107 1806 aaPredicted RBP1.81□□□□□ -2.12
CD44-229ENST00000528672 PCDH15Q96QU1 1955 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 ZFHX2Q9C0A1 2572 aaPredicted RBP1.81□□□□□ -2.12
CD44-229ENST00000528672 MPDZO75970 2070 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 HEATR5BQ9P2D3 2071 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 DIDO1Q9BTC0 2240 aaKnown RBP1.81□□□□□ -2.12
CD44-229ENST00000528672 DNHD1Q96M86 4753 aa1.81□□□□□ -2.12
CD44-229ENST00000528672 DDX60LQ5H9U9 1706 aaKnown RBP1.8□□□□□ -2.12
CD44-229ENST00000528672 HELZ2Q9BYK8 2649 aaKnown RBP1.8□□□□□ -2.12
CD44-229ENST00000528672 IGHV3-64A0A075B6Q5 118 aa1.8□□□□□ -2.12
CD44-229ENST00000528672 HRES1P13985 223 aa1.8□□□□□ -2.12
CD44-229ENST00000528672 FXYD6P3P58550 94 aa1.8□□□□□ -2.12
CD44-229ENST00000528672 C1orf137Q5JT78 98 aa1.8□□□□□ -2.12
CD44-229ENST00000528672 ZNF833PQ6ZTB9 187 aa1.8□□□□□ -2.12
CD44-229ENST00000528672 DEFB123Q8N688 67 aa1.8□□□□□ -2.12
CD44-229ENST00000528672 C9orf163Q8N9P6 203 aa1.8□□□□□ -2.12
CD44-229ENST00000528672 Q9BRP9 147 aa1.8□□□□□ -2.12
CD44-229ENST00000528672 HIGD2AQ9BW72 106 aa1.8□□□□□ -2.12
CD44-229ENST00000528672 LINC01558Q9Y6Z2 57 aa1.8□□□□□ -2.12
CD44-229ENST00000528672 BAZ2BQ9UIF8 2168 aaKnown RBP1.8□□□□□ -2.12
CD44-229ENST00000528672 PARP4Q9UKK3 1724 aaKnown RBP1.8□□□□□ -2.12
CD44-229ENST00000528672 HEATR1Q9H583 2144 aaKnown RBP1.79□□□□□ -2.12
CD44-229ENST00000528672 C2CD3Q4AC94 2353 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 BPTFQ12830 3046 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 TRAV12-1A0A0B4J245 112 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 LCE6AA0A183 80 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 PIN1P1O15428 100 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 SPINK4O60575 86 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 PPP1R17O96001 155 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 DNAL4O96015 105 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 COX6B1P14854 86 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 PLNP26678 52 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 SPAG11BQ08648 103 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 NREPQ16612 68 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 FAM74A4Q5TZK3 123 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 SPAG11AQ6PDA7 123 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 Q86TA4 180 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 TTTY12Q9BZ98 90 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 MRPL36Q9P0J6 103 aaKnown RBP1.79□□□□□ -2.12
CD44-229ENST00000528672 DEPDC5O75140 1603 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 SHPRHQ149N8 1683 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 DOT1LQ8TEK3 1739 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 MYO7AQ13402 2215 aa1.79□□□□□ -2.12
CD44-229ENST00000528672 ZFHX3Q15911 3703 aa1.78□□□□□ -2.12
CD44-229ENST00000528672 NCOA6Q14686 2063 aaPredicted RBP1.78□□□□□ -2.12
CD44-229ENST00000528672 ZNF831Q5JPB2 1677 aa1.78□□□□□ -2.12
CD44-229ENST00000528672 DUOX1Q9NRD9 1551 aa1.78□□□□□ -2.12
CD44-229ENST00000528672 A0A1B0GUT8 65 aa1.78□□□□□ -2.12
CD44-229ENST00000528672 NUPR2A6NF83 97 aa1.78□□□□□ -2.12
CD44-229ENST00000528672 IGKV1-17P01599 117 aa1.78□□□□□ -2.12
CD44-229ENST00000528672 IGLV3-19P01714 112 aa1.78□□□□□ -2.12
CD44-229ENST00000528672 ENHOQ6UWT2 76 aa1.78□□□□□ -2.12
CD44-229ENST00000528672 LYPD1Q8N2G4 141 aa1.78□□□□□ -2.12
CD44-229ENST00000528672 ZCCHC13Q8WW36 166 aaKnown RBP1.78□□□□□ -2.12
CD44-229ENST00000528672 MYO9AB2RTY4 2548 aa1.78□□□□□ -2.12
CD44-229ENST00000528672 TPRP12270 2363 aaKnown RBP1.78□□□□□ -2.12
CD44-229ENST00000528672 MALRD1Q5VYJ5 2156 aa1.78□□□□□ -2.13
CD44-229ENST00000528672 FREM3P0C091 2139 aa1.78□□□□□ -2.13
CD44-229ENST00000528672 MYO7BQ6PIF6 2116 aa1.78□□□□□ -2.13
CD44-229ENST00000528672 DNAH12Q6ZR08 3092 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 KALRNO60229 2985 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 FBN2P35556 2912 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 TIAM2Q8IVF5 1701 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 COL4A1P02462 1669 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 SCN7AQ01118 1682 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 SDK2Q58EX2 2172 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 IGKV3-7A0A075B6H7 116 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 TRAV21A0A0B4J279 112 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 IGKV2-24A0A0C4DH68 120 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 IGIPA6NJ69 53 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 M0R135 149 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 M0R3E3 92 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 IGLV6-57P01721 117 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 DMAC1Q96GE9 116 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 AMELXQ99217 191 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 DLEC1Q9Y238 1755 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 ACACBO00763 2458 aa1.77□□□□□ -2.13
CD44-229ENST00000528672 DDX60Q8IY21 1712 aaKnown RBP1.77□□□□□ -2.13
CD44-229ENST00000528672 BRCA2P51587 3418 aa1.76□□□□□ -2.13
CD44-229ENST00000528672 PRR14LQ5THK1 2151 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms