RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 COX7A2LO14548 114 aa4.9□□□□□ -1.63
CD44-228ENST00000528455 APOMO95445 188 aa4.9□□□□□ -1.63
CD44-228ENST00000528455 ZNF22P17026 224 aaPredicted RBP4.9□□□□□ -1.63
CD44-228ENST00000528455 TMEM170BQ5T4T1 132 aa4.9□□□□□ -1.63
CD44-228ENST00000528455 C1orf134Q5TEV5 83 aa4.9□□□□□ -1.63
CD44-228ENST00000528455 CFAP161Q6P656 301 aa4.9□□□□□ -1.63
CD44-228ENST00000528455 C5orf38Q86SI9 138 aa4.9□□□□□ -1.63
CD44-228ENST00000528455 C6orf223Q8N319 242 aa4.9□□□□□ -1.63
CD44-228ENST00000528455 LINC00469Q8N7U9 141 aa4.9□□□□□ -1.63
CD44-228ENST00000528455 PMCHL2Q9BQD1 86 aa4.9□□□□□ -1.63
CD44-228ENST00000528455 CHAC1Q9BUX1 264 aa4.9□□□□□ -1.63
CD44-228ENST00000528455 HECTD4Q9Y4D8 3996 aa4.9□□□□□ -1.63
CD44-228ENST00000528455 DNAH2Q9P225 4427 aa4.89□□□□□ -1.63
CD44-228ENST00000528455 TMEM223A0PJW6 202 aa4.89□□□□□ -1.63
CD44-228ENST00000528455 MAPKAPK5-AS1Q8N8E1 139 aa4.89□□□□□ -1.63
CD44-228ENST00000528455 DNAH17Q9UFH2 4485 aa4.89□□□□□ -1.63
CD44-228ENST00000528455 IGHV3-64A0A075B6Q5 118 aa4.88□□□□□ -1.63
CD44-228ENST00000528455 IGHV1-58A0A0C4DH39 117 aa4.88□□□□□ -1.63
CD44-228ENST00000528455 IGLV5-39A0A0G2JS06 123 aa4.88□□□□□ -1.63
CD44-228ENST00000528455 F8WDY8 70 aa4.88□□□□□ -1.63
CD44-228ENST00000528455 PSCAO43653 123 aa4.88□□□□□ -1.63
CD44-228ENST00000528455 HERVK_113P61574 105 aa4.88□□□□□ -1.63
CD44-228ENST00000528455 PYY3Q5JQD4 70 aa4.88□□□□□ -1.63
CD44-228ENST00000528455 Q6ZRN7 208 aaPredicted RBP4.88□□□□□ -1.63
CD44-228ENST00000528455 STPG4Q8N801 248 aa4.88□□□□□ -1.63
CD44-228ENST00000528455 SMIM1B2RUZ4 78 aa4.87□□□□□ -1.63
CD44-228ENST00000528455 HSBP1L1C9JCN9 74 aa4.87□□□□□ -1.63
CD44-228ENST00000528455 E9PLD3 99 aa4.87□□□□□ -1.63
CD44-228ENST00000528455 LEPROTO15243 131 aa4.87□□□□□ -1.63
CD44-228ENST00000528455 C6orf226Q5I0X4 101 aa4.87□□□□□ -1.63
CD44-228ENST00000528455 FAT2Q9NYQ8 4349 aa4.86□□□□□ -1.63
CD44-228ENST00000528455 LRCOL1A6NCL2 159 aa4.86□□□□□ -1.63
CD44-228ENST00000528455 RTL8CO15255 209 aa4.86□□□□□ -1.63
CD44-228ENST00000528455 SPINK8P0C7L1 97 aa4.86□□□□□ -1.63
CD44-228ENST00000528455 PCP4P48539 62 aa4.86□□□□□ -1.63
CD44-228ENST00000528455 S100A12P80511 92 aa4.86□□□□□ -1.63
CD44-228ENST00000528455 KIAA0087Q14695 138 aa4.86□□□□□ -1.63
CD44-228ENST00000528455 C14orf177Q52M58 125 aa4.86□□□□□ -1.63
CD44-228ENST00000528455 SFTA2Q6UW10 78 aa4.86□□□□□ -1.63
CD44-228ENST00000528455 Q8IZM0 81 aa4.86□□□□□ -1.63
CD44-228ENST00000528455 ATOH7Q8N100 152 aa4.86□□□□□ -1.63
CD44-228ENST00000528455 PLEKHB2Q96CS7 222 aa4.86□□□□□ -1.63
CD44-228ENST00000528455 GVQW2A0A096LPI5 108 aaPredicted RBP4.85□□□□□ -1.63
CD44-228ENST00000528455 hDV102S1A0JD36 115 aa4.85□□□□□ -1.63
CD44-228ENST00000528455 PRSS2P07478 247 aa4.85□□□□□ -1.63
CD44-228ENST00000528455 SMIM6P0DI80 62 aa4.85□□□□□ -1.63
CD44-228ENST00000528455 COX7B2Q8TF08 81 aa4.85□□□□□ -1.63
CD44-228ENST00000528455 C2orf48Q96LS8 159 aa4.85□□□□□ -1.63
CD44-228ENST00000528455 VAMP8Q9BV40 100 aa4.85□□□□□ -1.63
CD44-228ENST00000528455 KIAA1109Q2LD37 5005 aa4.84□□□□□ -1.63
CD44-228ENST00000528455 PKD1P98161 4303 aa4.84□□□□□ -1.63
CD44-228ENST00000528455 A0A1B0GVY2 172 aa4.84□□□□□ -1.63
CD44-228ENST00000528455 USP17L23D6RBM5 183 aa4.84□□□□□ -1.63
CD44-228ENST00000528455 J3QQQ9 107 aa4.84□□□□□ -1.63
CD44-228ENST00000528455 CXCL5P42830 114 aa4.84□□□□□ -1.63
CD44-228ENST00000528455 NMUP48645 174 aa4.84□□□□□ -1.63
CD44-228ENST00000528455 C15orf56Q8N910 161 aa4.84□□□□□ -1.63
CD44-228ENST00000528455 ORAOV1Q8WV07 137 aa4.84□□□□□ -1.63
CD44-228ENST00000528455 PKHD1P08F94 4074 aa4.83□□□□□ -1.64
CD44-228ENST00000528455 A0A087WTM6 91 aa4.83□□□□□ -1.64
CD44-228ENST00000528455 LINC00587B1AMM8 73 aa4.83□□□□□ -1.64
CD44-228ENST00000528455 DLEU1O43261 78 aa4.83□□□□□ -1.64
CD44-228ENST00000528455 CKS1BP61024 79 aa4.83□□□□□ -1.64
CD44-228ENST00000528455 HERV-K104P63124 156 aa4.83□□□□□ -1.64
CD44-228ENST00000528455 MAJINQ3KP22 176 aa4.83□□□□□ -1.64
CD44-228ENST00000528455 C10orf25Q5T742 122 aa4.83□□□□□ -1.64
CD44-228ENST00000528455 TOMM7Q9P0U1 55 aa4.83□□□□□ -1.64
CD44-228ENST00000528455 HERC2O95714 4834 aa4.82□□□□□ -1.64
CD44-228ENST00000528455 IGKV2D-26A0A0A0MRZ7 120 aa4.82□□□□□ -1.64
CD44-228ENST00000528455 MYMXA0A1B0GTQ4 84 aa4.82□□□□□ -1.64
CD44-228ENST00000528455 LGALS3P17931 250 aaKnown RBP4.82□□□□□ -1.64
CD44-228ENST00000528455 SPAG11BQ08648 103 aa4.82□□□□□ -1.64
CD44-228ENST00000528455 COX17Q14061 63 aa4.82□□□□□ -1.64
CD44-228ENST00000528455 SPATA45Q537H7 98 aa4.82□□□□□ -1.64
CD44-228ENST00000528455 LINC00518Q8N0U6 118 aa4.82□□□□□ -1.64
CD44-228ENST00000528455 Q8N814 137 aa4.82□□□□□ -1.64
CD44-228ENST00000528455 ZNF625Q96I27 306 aaPredicted RBP4.82□□□□□ -1.64
CD44-228ENST00000528455 PAM16Q9Y3D7 125 aa4.82□□□□□ -1.64
CD44-228ENST00000528455 PCLOQ9Y6V0 5065 aa4.81□□□□□ -1.64
CD44-228ENST00000528455 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.81□□□□□ -1.64
CD44-228ENST00000528455 TRBV30A0A0K0K1B3 111 aa4.81□□□□□ -1.64
CD44-228ENST00000528455 NDUFA1O15239 70 aa4.81□□□□□ -1.64
CD44-228ENST00000528455 COX8AP10176 69 aa4.81□□□□□ -1.64
CD44-228ENST00000528455 CNBPP62633 177 aaKnown RBP4.81□□□□□ -1.64
CD44-228ENST00000528455 SYCNQ0VAF6 134 aa4.81□□□□□ -1.64
CD44-228ENST00000528455 UNQ6190/PRO20217Q6UXQ8 127 aa4.81□□□□□ -1.64
CD44-228ENST00000528455 BOD1L2Q8IYS8 172 aa4.81□□□□□ -1.64
CD44-228ENST00000528455 CAMK2N2Q96S95 79 aa4.81□□□□□ -1.64
CD44-228ENST00000528455 C12orf57Q99622 126 aa4.81□□□□□ -1.64
CD44-228ENST00000528455 NDUFA12Q9UI09 145 aa4.81□□□□□ -1.64
CD44-228ENST00000528455 LECT2O14960 151 aa4.8□□□□□ -1.64
CD44-228ENST00000528455 TSPEAR-AS2P59090 65 aa4.8□□□□□ -1.64
CD44-228ENST00000528455 CIRBPQ14011 172 aaKnown RBP4.8□□□□□ -1.64
CD44-228ENST00000528455 WFDC2Q14508 124 aa4.8□□□□□ -1.64
CD44-228ENST00000528455 HIGD2BQ4VC39 106 aa4.8□□□□□ -1.64
CD44-228ENST00000528455 C2orf82Q6UX34 121 aa4.8□□□□□ -1.64
CD44-228ENST00000528455 PCP2Q8IVA1 136 aa4.8□□□□□ -1.64
CD44-228ENST00000528455 C9orf163Q8N9P6 203 aa4.8□□□□□ -1.64
CD44-228ENST00000528455 LINC00526Q96FQ7 95 aa4.8□□□□□ -1.64
CD44-228ENST00000528455 ZNF815PA8K554 130 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms