RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 KLHL30-AS1Q8NEE0 82 aa3.64□□□□□ -1.83
CD44-218ENST00000525469 C11orf68Q9H3H3 251 aaKnown RBP3.64□□□□□ -1.83
CD44-218ENST00000525469 DAZ3Q9NR90 486 aaKnown RBP3.64□□□□□ -1.83
CD44-218ENST00000525469 UBE2D4Q9Y2X8 147 aa3.64□□□□□ -1.83
CD44-218ENST00000525469 TRAV13-2A0A0B4J235 113 aa3.63□□□□□ -1.83
CD44-218ENST00000525469 IGHV1-58A0A0C4DH39 117 aa3.63□□□□□ -1.83
CD44-218ENST00000525469 A6NDX4 124 aa3.63□□□□□ -1.83
CD44-218ENST00000525469 IGIPA6NJ69 53 aa3.63□□□□□ -1.83
CD44-218ENST00000525469 I3L3M4 83 aa3.63□□□□□ -1.83
CD44-218ENST00000525469 PRSS2P07478 247 aa3.63□□□□□ -1.83
CD44-218ENST00000525469 XCL1P47992 114 aa3.63□□□□□ -1.83
CD44-218ENST00000525469 Q8N9P0 234 aaPredicted RBP3.63□□□□□ -1.83
CD44-218ENST00000525469 AMELXQ99217 191 aa3.63□□□□□ -1.83
CD44-218ENST00000525469 CCL13Q99616 98 aa3.63□□□□□ -1.83
CD44-218ENST00000525469 TM2D3Q9BRN9 247 aa3.63□□□□□ -1.83
CD44-218ENST00000525469 UBL5Q9BZL1 73 aa3.63□□□□□ -1.83
CD44-218ENST00000525469 XCL2Q9UBD3 114 aa3.63□□□□□ -1.83
CD44-218ENST00000525469 KAAG1Q9UBP8 84 aa3.63□□□□□ -1.83
CD44-218ENST00000525469 MOB4Q9Y3A3 225 aa3.63□□□□□ -1.83
CD44-218ENST00000525469 TRAV21A0A0B4J279 112 aa3.62□□□□□ -1.83
CD44-218ENST00000525469 CCL24O00175 119 aa3.62□□□□□ -1.83
CD44-218ENST00000525469 PDE6GP18545 87 aa3.62□□□□□ -1.83
CD44-218ENST00000525469 RBM3P98179 157 aaKnown RBP3.62□□□□□ -1.83
CD44-218ENST00000525469 C17orf58Q2M2W7 97 aa3.62□□□□□ -1.83
CD44-218ENST00000525469 ZNF491Q8N8L2 437 aa3.62□□□□□ -1.83
CD44-218ENST00000525469 PHLDA3Q9Y5J5 127 aa3.62□□□□□ -1.83
CD44-218ENST00000525469 HECTD4Q9Y4D8 3996 aa3.62□□□□□ -1.83
CD44-218ENST00000525469 KIAA1109Q2LD37 5005 aa3.61□□□□□ -1.83
CD44-218ENST00000525469 TRBV27A0A0K0K1C4 114 aa3.61□□□□□ -1.83
CD44-218ENST00000525469 I3L2K1 104 aa3.61□□□□□ -1.83
CD44-218ENST00000525469 NDUFS5O43920 106 aa3.61□□□□□ -1.83
CD44-218ENST00000525469 IGKV1-16P04430 117 aa3.61□□□□□ -1.83
CD44-218ENST00000525469 S100A4P26447 101 aaKnown RBP3.61□□□□□ -1.83
CD44-218ENST00000525469 C10orf99Q6UWK7 81 aa3.61□□□□□ -1.83
CD44-218ENST00000525469 LYPD5Q6UWN5 251 aa3.61□□□□□ -1.83
CD44-218ENST00000525469 C9orf47Q6ZRZ4 202 aa3.61□□□□□ -1.83
CD44-218ENST00000525469 FAM19A1Q7Z5A9 133 aa3.61□□□□□ -1.83
CD44-218ENST00000525469 SMCR5Q8TEV8 140 aa3.61□□□□□ -1.83
CD44-218ENST00000525469 MRPL36Q9P0J6 103 aaKnown RBP3.61□□□□□ -1.83
CD44-218ENST00000525469 DSCAML1Q8TD84 2053 aa3.61□□□□□ -1.83
CD44-218ENST00000525469 IGKV1D-17A0A075B6S4 117 aa3.6□□□□□ -1.83
CD44-218ENST00000525469 H7BZZ5 65 aa3.6□□□□□ -1.83
CD44-218ENST00000525469 CCKP06307 115 aa3.6□□□□□ -1.83
CD44-218ENST00000525469 COX7A1P24310 79 aa3.6□□□□□ -1.83
CD44-218ENST00000525469 RPL28P46779 137 aaKnown RBP3.6□□□□□ -1.83
CD44-218ENST00000525469 HCP5Q6MZN7 132 aa3.6□□□□□ -1.83
CD44-218ENST00000525469 C20orf197Q8N268 126 aa3.6□□□□□ -1.83
CD44-218ENST00000525469 OBSCN-AS1Q96MR7 158 aa3.6□□□□□ -1.83
CD44-218ENST00000525469 NDUFA12Q9UI09 145 aa3.6□□□□□ -1.83
CD44-218ENST00000525469 HUWE1Q7Z6Z7 4374 aaKnown RBP3.6□□□□□ -1.83
CD44-218ENST00000525469 IGHV7-4-1A0A0J9YVY3 117 aa3.59□□□□□ -1.83
CD44-218ENST00000525469 IBA57-AS1B1ANH7 110 aa3.59□□□□□ -1.83
CD44-218ENST00000525469 NDUFA1O15239 70 aa3.59□□□□□ -1.83
CD44-218ENST00000525469 OXTP01178 125 aa3.59□□□□□ -1.83
CD44-218ENST00000525469 IGKV1-17P01599 117 aa3.59□□□□□ -1.83
CD44-218ENST00000525469 IGLV2-23P01705 113 aa3.59□□□□□ -1.83
CD44-218ENST00000525469 IGHV3-30-3P0DP02 117 aa3.59□□□□□ -1.83
CD44-218ENST00000525469 GATA1P15976 413 aaPredicted RBP3.59□□□□□ -1.83
CD44-218ENST00000525469 RNASE4P34096 147 aaKnown RBP3.59□□□□□ -1.83
CD44-218ENST00000525469 POLR2KP53803 58 aaKnown RBP3.59□□□□□ -1.83
CD44-218ENST00000525469 LINC00205P59089 165 aa3.59□□□□□ -1.83
CD44-218ENST00000525469 CXCL6P80162 114 aa3.59□□□□□ -1.83
CD44-218ENST00000525469 C18orf65Q6ZTR6 163 aa3.59□□□□□ -1.83
CD44-218ENST00000525469 MSRB1Q9NZV6 116 aa3.59□□□□□ -1.83
CD44-218ENST00000525469 IGKV2-40A0A087WW87 121 aaPredicted RBP3.58□□□□□ -1.84
CD44-218ENST00000525469 NUPR2A6NF83 97 aa3.58□□□□□ -1.84
CD44-218ENST00000525469 F6UB75 175 aa3.58□□□□□ -1.84
CD44-218ENST00000525469 TMEM256-PLSCR3K7ERE1 68 aa3.58□□□□□ -1.84
CD44-218ENST00000525469 IGKV2D-40P01614 121 aaPredicted RBP3.58□□□□□ -1.84
CD44-218ENST00000525469 CRPP02741 224 aa3.58□□□□□ -1.84
CD44-218ENST00000525469 IGHV4-30-4P0DP06 118 aa3.58□□□□□ -1.84
CD44-218ENST00000525469 ESRGQ1W209 222 aa3.58□□□□□ -1.84
CD44-218ENST00000525469 DEFB136Q30KP8 78 aa3.58□□□□□ -1.84
CD44-218ENST00000525469 LINC01561Q8N1V8 128 aa3.58□□□□□ -1.84
CD44-218ENST00000525469 CLEC2BQ92478 149 aa3.58□□□□□ -1.84
CD44-218ENST00000525469 EEF1AKMT3Q96AZ1 226 aa3.58□□□□□ -1.84
CD44-218ENST00000525469 LITAFQ99732 161 aa3.58□□□□□ -1.84
CD44-218ENST00000525469 Q9H8V8 135 aa3.58□□□□□ -1.84
CD44-218ENST00000525469 IGKV3D-20A0A0C4DH25 116 aa3.57□□□□□ -1.84
CD44-218ENST00000525469 IGHV1-3A0A0C4DH29 117 aa3.57□□□□□ -1.84
CD44-218ENST00000525469 UBE2L6O14933 153 aa3.57□□□□□ -1.84
CD44-218ENST00000525469 TRGV3P03979 118 aa3.57□□□□□ -1.84
CD44-218ENST00000525469 MGPP08493 103 aa3.57□□□□□ -1.84
CD44-218ENST00000525469 TSPEAR-AS2P59090 65 aa3.57□□□□□ -1.84
CD44-218ENST00000525469 UBE2BP63146 152 aa3.57□□□□□ -1.84
CD44-218ENST00000525469 C10orf25Q5T742 122 aa3.57□□□□□ -1.84
CD44-218ENST00000525469 C14orf178Q8N769 122 aaPredicted RBP3.57□□□□□ -1.84
CD44-218ENST00000525469 C20orf203Q8NBC4 194 aa3.57□□□□□ -1.84
CD44-218ENST00000525469 ORMDL1Q9P0S3 153 aa3.57□□□□□ -1.84
CD44-218ENST00000525469 ALMS1Q8TCU4 4167 aa3.57□□□□□ -1.84
CD44-218ENST00000525469 FAM223BA6NKX1 122 aa3.56□□□□□ -1.84
CD44-218ENST00000525469 KRTAP29-1A8MX34 341 aaPredicted RBP3.56□□□□□ -1.84
CD44-218ENST00000525469 MIFP14174 115 aa3.56□□□□□ -1.84
CD44-218ENST00000525469 DAD1P61803 113 aa3.56□□□□□ -1.84
CD44-218ENST00000525469 SNRPD3P62318 126 aaKnown RBP3.56□□□□□ -1.84
CD44-218ENST00000525469 Q1T7F1 81 aa3.56□□□□□ -1.84
CD44-218ENST00000525469 MINOS1Q5TGZ0 78 aa3.56□□□□□ -1.84
CD44-218ENST00000525469 FP248Q71RG6 208 aaPredicted RBP3.56□□□□□ -1.84
CD44-218ENST00000525469 ZNRF1Q8ND25 227 aa3.56□□□□□ -1.84
CD44-218ENST00000525469 MPLKIPQ8TAP9 179 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms