RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 MAJINQ3KP22 176 aa10.55□□□□□ -0.72
LSM1-204ENST00000522515 PGPEP1Q9NXJ5 209 aa10.55□□□□□ -0.72
LSM1-204ENST00000522515 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.54□□□□□ -0.72
LSM1-204ENST00000522515 NDUFA1O15239 70 aa10.54□□□□□ -0.72
LSM1-204ENST00000522515 TSPEAR-AS2P59090 65 aa10.54□□□□□ -0.72
LSM1-204ENST00000522515 PYY3Q5JQD4 70 aa10.54□□□□□ -0.72
LSM1-204ENST00000522515 CARD19Q96LW7 228 aa10.54□□□□□ -0.72
LSM1-204ENST00000522515 F8WDY8 70 aa10.53□□□□□ -0.72
LSM1-204ENST00000522515 LINC01620Q4KN68 170 aa10.53□□□□□ -0.72
LSM1-204ENST00000522515 ANKRD39Q53RE8 183 aa10.53□□□□□ -0.72
LSM1-204ENST00000522515 IGKV2D-26A0A0A0MRZ7 120 aa10.52□□□□□ -0.72
LSM1-204ENST00000522515 J3QQQ9 107 aa10.52□□□□□ -0.72
LSM1-204ENST00000522515 CXCL5P42830 114 aa10.52□□□□□ -0.72
LSM1-204ENST00000522515 C9orf163Q8N9P6 203 aa10.52□□□□□ -0.72
LSM1-204ENST00000522515 PLEKHB2Q96CS7 222 aa10.52□□□□□ -0.72
LSM1-204ENST00000522515 CDPF1Q6NVV7 123 aa10.52□□□□□ -0.73
LSM1-204ENST00000522515 C6orf48Q9UBA6 75 aa10.52□□□□□ -0.73
LSM1-204ENST00000522515 ZNF625Q96I27 306 aaPredicted RBP10.51□□□□□ -0.73
LSM1-204ENST00000522515 NDUFA12Q9UI09 145 aa10.5□□□□□ -0.73
LSM1-204ENST00000522515 HECTD4Q9Y4D8 3996 aa10.5□□□□□ -0.73
LSM1-204ENST00000522515 TRBV30A0A0K0K1B3 111 aa10.49□□□□□ -0.73
LSM1-204ENST00000522515 LGALS3P17931 250 aaKnown RBP10.49□□□□□ -0.73
LSM1-204ENST00000522515 C9orf116Q5BN46 136 aaPredicted RBP10.49□□□□□ -0.73
LSM1-204ENST00000522515 DNAH5Q8TE73 4624 aa10.49□□□□□ -0.73
LSM1-204ENST00000522515 HSBP1L1C9JCN9 74 aa10.48□□□□□ -0.73
LSM1-204ENST00000522515 RNF151Q2KHN1 245 aa10.48□□□□□ -0.73
LSM1-204ENST00000522515 SMIM6P0DI80 62 aa10.48□□□□□ -0.73
LSM1-204ENST00000522515 GCSHP23434 173 aa10.48□□□□□ -0.73
LSM1-204ENST00000522515 NMUP48645 174 aa10.48□□□□□ -0.73
LSM1-204ENST00000522515 TTTY13Q9BZ97 58 aa10.48□□□□□ -0.73
LSM1-204ENST00000522515 SFTA2Q6UW10 78 aa10.47□□□□□ -0.73
LSM1-204ENST00000522515 LINC00518Q8N0U6 118 aa10.47□□□□□ -0.73
LSM1-204ENST00000522515 MYMXA0A1B0GTQ4 84 aa10.46□□□□□ -0.74
LSM1-204ENST00000522515 SDIM1Q6ZPB5 146 aa10.46□□□□□ -0.74
LSM1-204ENST00000522515 PKHD1P08F94 4074 aa10.45□□□□□ -0.74
LSM1-204ENST00000522515 C16orf90A8MZG2 172 aa10.45□□□□□ -0.74
LSM1-204ENST00000522515 VAMP8Q9BV40 100 aa10.45□□□□□ -0.74
LSM1-204ENST00000522515 KRTAP10-1P60331 282 aa10.44□□□□□ -0.74
LSM1-204ENST00000522515 PCP2Q8IVA1 136 aa10.44□□□□□ -0.74
LSM1-204ENST00000522515 C12orf57Q99622 126 aa10.44□□□□□ -0.74
LSM1-204ENST00000522515 PAM16Q9Y3D7 125 aa10.44□□□□□ -0.74
LSM1-204ENST00000522515 HERV-K104P63124 156 aa10.43□□□□□ -0.74
LSM1-204ENST00000522515 LOC107984640A0A0U1RRK4 108 aa10.43□□□□□ -0.74
LSM1-204ENST00000522515 ZNF815PA8K554 130 aa10.43□□□□□ -0.74
LSM1-204ENST00000522515 TLX1NBP0CAT3 122 aa10.43□□□□□ -0.74
LSM1-204ENST00000522515 PFN2P35080 140 aa10.43□□□□□ -0.74
LSM1-204ENST00000522515 RPL18AQ02543 176 aaKnown RBP10.43□□□□□ -0.74
LSM1-204ENST00000522515 SPATA45Q537H7 98 aa10.43□□□□□ -0.74
LSM1-204ENST00000522515 ERG28Q9UKR5 140 aa10.43□□□□□ -0.74
LSM1-204ENST00000522515 NDUFC2-KCTD14E9PQ53 114 aa10.42□□□□□ -0.74
LSM1-204ENST00000522515 Q6ZRP5 223 aa10.42□□□□□ -0.74
LSM1-204ENST00000522515 A0A096LNI7 61 aa10.41□□□□□ -0.74
LSM1-204ENST00000522515 A0A0J9YXY3 114 aa10.41□□□□□ -0.74
LSM1-204ENST00000522515 EPPK1P58107 5090 aaKnown RBP10.41□□□□□ -0.74
LSM1-204ENST00000522515 A0A0U1RRA0 63 aa10.4□□□□□ -0.74
LSM1-204ENST00000522515 GAGE2BQ13066 116 aa10.4□□□□□ -0.74
LSM1-204ENST00000522515 MEIG1Q5JSS6 88 aa10.4□□□□□ -0.74
LSM1-204ENST00000522515 IGKV2-24A0A0C4DH68 120 aa10.39□□□□□ -0.75
LSM1-204ENST00000522515 PANO1I0J062 215 aa10.39□□□□□ -0.75
LSM1-204ENST00000522515 CHTF8P0CG12 524 aa10.39□□□□□ -0.75
LSM1-204ENST00000522515 SMIM13P0DJ93 91 aa10.39□□□□□ -0.75
LSM1-204ENST00000522515 GAGE2EQ4V326 116 aa10.39□□□□□ -0.75
LSM1-204ENST00000522515 FAM30AQ9NZY2 134 aa10.39□□□□□ -0.75
LSM1-204ENST00000522515 GAGE2DQ9UEU5 116 aa10.39□□□□□ -0.75
LSM1-204ENST00000522515 PKIGQ9Y2B9 76 aa10.39□□□□□ -0.75
LSM1-204ENST00000522515 PTTG1IPP53801 180 aa10.39□□□□□ -0.75
LSM1-204ENST00000522515 LINC00158P58513 81 aa10.39□□□□□ -0.75
LSM1-204ENST00000522515 COX17Q14061 63 aa10.39□□□□□ -0.75
LSM1-204ENST00000522515 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.39□□□□□ -0.75
LSM1-204ENST00000522515 DYNC1H1Q14204 4646 aaKnown RBP10.39□□□□□ -0.75
LSM1-204ENST00000522515 TP73-AS1Q9UF72 201 aa10.38□□□□□ -0.75
LSM1-204ENST00000522515 LRP1BQ9NZR2 4599 aa10.38□□□□□ -0.75
LSM1-204ENST00000522515 C14orf144Q96I85 54 aa10.37□□□□□ -0.75
LSM1-204ENST00000522515 LINC00587B1AMM8 73 aa10.36□□□□□ -0.75
LSM1-204ENST00000522515 COX8AP10176 69 aa10.36□□□□□ -0.75
LSM1-204ENST00000522515 XAGE1AQ9HD64 81 aa10.36□□□□□ -0.75
LSM1-204ENST00000522515 S100A12P80511 92 aa10.35□□□□□ -0.75
LSM1-204ENST00000522515 SCGB1D4Q6XE38 83 aa10.35□□□□□ -0.75
LSM1-204ENST00000522515 Q6ZSA8 131 aa10.35□□□□□ -0.75
LSM1-204ENST00000522515 BOD1L2Q8IYS8 172 aa10.35□□□□□ -0.75
LSM1-204ENST00000522515 CIRBPQ14011 172 aaKnown RBP10.35□□□□□ -0.75
LSM1-204ENST00000522515 C9orf129Q5T035 196 aaKnown RBP10.35□□□□□ -0.75
LSM1-204ENST00000522515 ADAMTSL4-AS1Q5T5F5 129 aa10.35□□□□□ -0.75
LSM1-204ENST00000522515 MIR7-3HGQ8N6C7 128 aa10.35□□□□□ -0.75
LSM1-204ENST00000522515 DAND5Q8N907 189 aa10.35□□□□□ -0.75
LSM1-204ENST00000522515 SPACA4Q8TDM5 124 aa10.35□□□□□ -0.75
LSM1-204ENST00000522515 LITAFQ99732 161 aa10.35□□□□□ -0.75
LSM1-204ENST00000522515 SND1-IT1Q9HBX3 110 aa10.34□□□□□ -0.75
LSM1-204ENST00000522515 LINC00474Q9P2X8 69 aa10.34□□□□□ -0.75
LSM1-204ENST00000522515 DPH3Q96FX2 82 aa10.33□□□□□ -0.76
LSM1-204ENST00000522515 DNAH8Q96JB1 4490 aa10.32□□□□□ -0.76
LSM1-204ENST00000522515 DLEU1O43261 78 aa10.32□□□□□ -0.76
LSM1-204ENST00000522515 TIMM17BO60830 172 aa10.32□□□□□ -0.76
LSM1-204ENST00000522515 HAMPP81172 84 aa10.31□□□□□ -0.76
LSM1-204ENST00000522515 FAM168BA1KXE4 195 aa10.31□□□□□ -0.76
LSM1-204ENST00000522515 SLC25A34Q6PIV7 304 aa10.31□□□□□ -0.76
LSM1-204ENST00000522515 A0A087WYN8 130 aa10.3□□□□□ -0.76
LSM1-204ENST00000522515 A0A1W2PNN7 141 aa10.3□□□□□ -0.76
LSM1-204ENST00000522515 TMEM238C9JI98 176 aa10.29□□□□□ -0.76
LSM1-204ENST00000522515 NPC2P61916 151 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms