RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 EFNA4P52798 201 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 PLGLAQ15195 96 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 C4orf26Q17RF5 130 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 FAM201AQ5SY85 155 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 TMEM170BQ5T4T1 132 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 PRR9Q5T870 116 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 SDIM1Q6ZPB5 146 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 FAM19A5Q7Z5A7 132 aaPredicted RBP4.07□□□□□ -1.76
LSM1-202ENST00000520286 OR13C6PQ8NH95 151 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 TMEM263Q8WUH6 116 aaKnown RBP4.07□□□□□ -1.76
LSM1-202ENST00000520286 UBE2WQ96B02 151 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 TOMM6Q96B49 74 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 PRO1854Q9UHT4 67 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 RPUSD1Q9UJJ7 312 aaKnown RBP4.07□□□□□ -1.76
LSM1-202ENST00000520286 AKAP6Q13023 2319 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 FREM1Q5H8C1 2179 aa4.07□□□□□ -1.76
LSM1-202ENST00000520286 TMSB15BA0A087X1C1 80 aa4.06□□□□□ -1.76
LSM1-202ENST00000520286 NDUFA3O95167 84 aa4.06□□□□□ -1.76
LSM1-202ENST00000520286 CRYGAP11844 174 aa4.06□□□□□ -1.76
LSM1-202ENST00000520286 HERVK_113P63121 156 aa4.06□□□□□ -1.76
LSM1-202ENST00000520286 ATXN8Q156A1 80 aa4.06□□□□□ -1.76
LSM1-202ENST00000520286 AMELXQ99217 191 aa4.06□□□□□ -1.76
LSM1-202ENST00000520286 HEATR1Q9H583 2144 aaKnown RBP4.06□□□□□ -1.76
LSM1-202ENST00000520286 TRBV30A0A0K0K1B3 111 aa4.05□□□□□ -1.76
LSM1-202ENST00000520286 H3BQ85 93 aa4.05□□□□□ -1.76
LSM1-202ENST00000520286 H3BVH4 76 aa4.05□□□□□ -1.76
LSM1-202ENST00000520286 GLRXP35754 106 aa4.05□□□□□ -1.76
LSM1-202ENST00000520286 HIST1H4AP62805 103 aaKnown RBP4.05□□□□□ -1.76
LSM1-202ENST00000520286 C10orf55Q5SWW7 151 aa4.05□□□□□ -1.76
LSM1-202ENST00000520286 C9orf153Q5TBE3 101 aa4.05□□□□□ -1.76
LSM1-202ENST00000520286 LINC00311Q8N616 119 aa4.05□□□□□ -1.76
LSM1-202ENST00000520286 C1orf64Q8NEQ6 169 aa4.05□□□□□ -1.76
LSM1-202ENST00000520286 LEAP2Q969E1 77 aa4.05□□□□□ -1.76
LSM1-202ENST00000520286 SMIM2Q9BVW6 85 aa4.05□□□□□ -1.76
LSM1-202ENST00000520286 TP53TG1Q9Y2A0 90 aa4.05□□□□□ -1.76
LSM1-202ENST00000520286 PRR14LQ5THK1 2151 aa4.04□□□□□ -1.76
LSM1-202ENST00000520286 A0A0J9YX75 114 aa4.04□□□□□ -1.76
LSM1-202ENST00000520286 LOC107984640A0A0U1RRK4 108 aa4.04□□□□□ -1.76
LSM1-202ENST00000520286 I3L2K1 104 aa4.04□□□□□ -1.76
LSM1-202ENST00000520286 IGKV1-17P01599 117 aa4.04□□□□□ -1.76
LSM1-202ENST00000520286 ACYP1P07311 99 aa4.04□□□□□ -1.76
LSM1-202ENST00000520286 CRYGDP07320 174 aa4.04□□□□□ -1.76
LSM1-202ENST00000520286 COX7CP15954 63 aa4.04□□□□□ -1.76
LSM1-202ENST00000520286 ZNF80P51504 273 aaPredicted RBP4.04□□□□□ -1.76
LSM1-202ENST00000520286 TMEM155Q4W5P6 130 aa4.04□□□□□ -1.76
LSM1-202ENST00000520286 C5orf38Q86SI9 138 aa4.04□□□□□ -1.76
LSM1-202ENST00000520286 AGPAT4-IT1Q9H0P7 198 aa4.04□□□□□ -1.76
LSM1-202ENST00000520286 DOCK10Q96BY6 2186 aa4.04□□□□□ -1.76
LSM1-202ENST00000520286 TNCP24821 2201 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 MEGF8Q7Z7M0 2845 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.03□□□□□ -1.76
LSM1-202ENST00000520286 TEX49A0A1B0GTD5 131 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 FAM236AA0A1B0GUQ0 79 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 FAM236BA0A1B0GV22 79 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 RBAKDNA6NC62 111 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 C11orf86A6NJI1 115 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 OOSP1A8MZH6 123 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 F5H768 121 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 M0R381 172 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 M0R3E3 92 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 INAFM2P0DMQ5 153 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 VMA21Q3ZAQ7 101 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 SFTA2Q6UW10 78 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 SCGB1D4Q6XE38 83 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 ADM2Q7Z4H4 148 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 GAFA1Q96PS6 74 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 SCGB3A1Q96QR1 104 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 B9D2Q9BPU9 175 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 DSCAMO60469 2012 aa4.03□□□□□ -1.76
LSM1-202ENST00000520286 VPS13CQ709C8 3753 aa4.02□□□□□ -1.77
LSM1-202ENST00000520286 INTS1Q8N201 2190 aaKnown RBP4.02□□□□□ -1.77
LSM1-202ENST00000520286 SPRR5A0A1B0GTR4 108 aa4.02□□□□□ -1.77
LSM1-202ENST00000520286 OVOL1O14753 267 aa4.02□□□□□ -1.77
LSM1-202ENST00000520286 RPL27AP46776 148 aaKnown RBP4.02□□□□□ -1.77
LSM1-202ENST00000520286 TSPEAR-AS2P59090 65 aa4.02□□□□□ -1.77
LSM1-202ENST00000520286 TMEM258P61165 79 aa4.02□□□□□ -1.77
LSM1-202ENST00000520286 Q5XG85 94 aa4.02□□□□□ -1.77
LSM1-202ENST00000520286 LINC00643Q86TS7 51 aa4.02□□□□□ -1.77
LSM1-202ENST00000520286 C3orf56Q8N813 242 aa4.02□□□□□ -1.77
LSM1-202ENST00000520286 CCL19Q99731 98 aa4.02□□□□□ -1.77
LSM1-202ENST00000520286 SLC50A1Q9BRV3 221 aa4.02□□□□□ -1.77
LSM1-202ENST00000520286 TTTY12Q9BZ98 90 aa4.02□□□□□ -1.77
LSM1-202ENST00000520286 TLN2Q9Y4G6 2542 aa4.01□□□□□ -1.77
LSM1-202ENST00000520286 IGKV2-40A0A087WW87 121 aaPredicted RBP4.01□□□□□ -1.77
LSM1-202ENST00000520286 TRGV5A0A0B4J1U4 118 aa4.01□□□□□ -1.77
LSM1-202ENST00000520286 TINCRA0A1B0GVN0 87 aa4.01□□□□□ -1.77
LSM1-202ENST00000520286 A6NED7 52 aa4.01□□□□□ -1.77
LSM1-202ENST00000520286 SDHAF1A6NFY7 115 aa4.01□□□□□ -1.77
LSM1-202ENST00000520286 RTL8CO15255 209 aa4.01□□□□□ -1.77
LSM1-202ENST00000520286 IGKV2D-40P01614 121 aaPredicted RBP4.01□□□□□ -1.77
LSM1-202ENST00000520286 ZNF56Q15929 161 aa4.01□□□□□ -1.77
LSM1-202ENST00000520286 C2orf82Q6UX34 121 aa4.01□□□□□ -1.77
LSM1-202ENST00000520286 FAM216BQ8N7L0 139 aa4.01□□□□□ -1.77
LSM1-202ENST00000520286 SONP18583 2426 aaKnown RBP4.01□□□□□ -1.77
LSM1-202ENST00000520286 ZANQ9Y493 2812 aa4□□□□□ -1.77
LSM1-202ENST00000520286 K7EIM0 57 aa4□□□□□ -1.77
LSM1-202ENST00000520286 LST1O00453 97 aa4□□□□□ -1.77
LSM1-202ENST00000520286 LEPROTO15243 131 aa4□□□□□ -1.77
LSM1-202ENST00000520286 IGHV3-53P01767 116 aa4□□□□□ -1.77
LSM1-202ENST00000520286 HCP5Q6MZN7 132 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms