RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 A0A1B0GW15 77 aa6.51□□□□□ -1.37
LIMCH1-221ENST00000515785 SERF1AO75920 110 aa6.51□□□□□ -1.37
LIMCH1-221ENST00000515785 S100A6P06703 90 aa6.51□□□□□ -1.37
LIMCH1-221ENST00000515785 ZNF25P17030 456 aaPredicted RBP6.51□□□□□ -1.37
LIMCH1-221ENST00000515785 C5orf38Q86SI9 138 aa6.51□□□□□ -1.37
LIMCH1-221ENST00000515785 KRTAP9-7A8MTY7 169 aa6.5□□□□□ -1.37
LIMCH1-221ENST00000515785 D6R8Y8 96 aa6.5□□□□□ -1.37
LIMCH1-221ENST00000515785 NPYP01303 97 aa6.5□□□□□ -1.37
LIMCH1-221ENST00000515785 PMCHP20382 165 aa6.5□□□□□ -1.37
LIMCH1-221ENST00000515785 GAGE2EQ4V326 116 aa6.5□□□□□ -1.37
LIMCH1-221ENST00000515785 TYMSOSQ8TAI1 123 aa6.5□□□□□ -1.37
LIMCH1-221ENST00000515785 BORCS7Q96B45 105 aa6.5□□□□□ -1.37
LIMCH1-221ENST00000515785 C2orf48Q96LS8 159 aa6.5□□□□□ -1.37
LIMCH1-221ENST00000515785 CDC42SE2Q9NRR3 84 aa6.5□□□□□ -1.37
LIMCH1-221ENST00000515785 GAGE2DQ9UEU5 116 aa6.5□□□□□ -1.37
LIMCH1-221ENST00000515785 IGLV7-46A0A075B6I9 117 aa6.49□□□□□ -1.37
LIMCH1-221ENST00000515785 A0A087X002 238 aa6.49□□□□□ -1.37
LIMCH1-221ENST00000515785 SDHAF1A6NFY7 115 aa6.49□□□□□ -1.37
LIMCH1-221ENST00000515785 ESDP10768 282 aa6.49□□□□□ -1.37
LIMCH1-221ENST00000515785 KRTAP7-1Q8IUC3 87 aa6.49□□□□□ -1.37
LIMCH1-221ENST00000515785 NRACQ8N912 160 aa6.49□□□□□ -1.37
LIMCH1-221ENST00000515785 HIST1H2BLQ99880 126 aa6.49□□□□□ -1.37
LIMCH1-221ENST00000515785 I3L3M4 83 aa6.48□□□□□ -1.37
LIMCH1-221ENST00000515785 M0QXV9 152 aa6.48□□□□□ -1.37
LIMCH1-221ENST00000515785 S100A8P05109 93 aa6.48□□□□□ -1.37
LIMCH1-221ENST00000515785 SPAG11BQ08648 103 aa6.48□□□□□ -1.37
LIMCH1-221ENST00000515785 RNF151Q2KHN1 245 aa6.48□□□□□ -1.37
LIMCH1-221ENST00000515785 RNASE13Q5GAN3 156 aaKnown RBP6.48□□□□□ -1.37
LIMCH1-221ENST00000515785 ZNF861PO60384 105 aa6.47□□□□□ -1.37
LIMCH1-221ENST00000515785 TPRXLQ17RH7 258 aa6.47□□□□□ -1.37
LIMCH1-221ENST00000515785 C10orf25Q5T742 122 aa6.47□□□□□ -1.37
LIMCH1-221ENST00000515785 BAGE3Q86Y29 109 aa6.47□□□□□ -1.37
LIMCH1-221ENST00000515785 FAM19A2Q8N3H0 131 aa6.47□□□□□ -1.37
LIMCH1-221ENST00000515785 PRELID3AQ96N28 172 aa6.47□□□□□ -1.37
LIMCH1-221ENST00000515785 ANAPC11Q9NYG5 84 aa6.47□□□□□ -1.37
LIMCH1-221ENST00000515785 A0A096LNJ9 63 aa6.46□□□□□ -1.38
LIMCH1-221ENST00000515785 TRAV13-1A0A0B4J241 112 aa6.46□□□□□ -1.38
LIMCH1-221ENST00000515785 LOC389332A0A1B0GUA5 103 aa6.46□□□□□ -1.38
LIMCH1-221ENST00000515785 TNFRSF6BO95407 300 aa6.46□□□□□ -1.38
LIMCH1-221ENST00000515785 CRYGAP11844 174 aa6.46□□□□□ -1.38
LIMCH1-221ENST00000515785 FABP4P15090 132 aa6.46□□□□□ -1.38
LIMCH1-221ENST00000515785 CKS2P33552 79 aa6.46□□□□□ -1.38
LIMCH1-221ENST00000515785 IFI27P40305 119 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-221ENST00000515785 PMCHL1Q16048 86 aa6.46□□□□□ -1.38
LIMCH1-221ENST00000515785 ORMDL3Q8N138 153 aa6.46□□□□□ -1.38
LIMCH1-221ENST00000515785 OR10D4PQ8NGN7 298 aa6.46□□□□□ -1.38
LIMCH1-221ENST00000515785 MRAP2Q96G30 205 aa6.46□□□□□ -1.38
LIMCH1-221ENST00000515785 TSHBP01222 138 aa6.45□□□□□ -1.38
LIMCH1-221ENST00000515785 UNQ6190/PRO20217Q6UXQ8 127 aa6.45□□□□□ -1.38
LIMCH1-221ENST00000515785 LINC00173Q6ZV60 143 aa6.45□□□□□ -1.38
LIMCH1-221ENST00000515785 PRSS47A8MTI9 375 aa6.44□□□□□ -1.38
LIMCH1-221ENST00000515785 AKR1D1P51857 326 aa6.44□□□□□ -1.38
LIMCH1-221ENST00000515785 PYY3Q5JQD4 70 aa6.44□□□□□ -1.38
LIMCH1-221ENST00000515785 MRPL52Q86TS9 123 aaKnown RBP6.44□□□□□ -1.38
LIMCH1-221ENST00000515785 ORAOV1Q8WV07 137 aa6.44□□□□□ -1.38
LIMCH1-221ENST00000515785 MRPL35Q9NZE8 188 aaKnown RBP6.44□□□□□ -1.38
LIMCH1-221ENST00000515785 LINC01546A6NGU7 62 aa6.43□□□□□ -1.38
LIMCH1-221ENST00000515785 NDUFA1O15239 70 aa6.43□□□□□ -1.38
LIMCH1-221ENST00000515785 LINC00614P0C842 121 aa6.43□□□□□ -1.38
LIMCH1-221ENST00000515785 KRTAP4-1Q9BYQ7 146 aa6.43□□□□□ -1.38
LIMCH1-221ENST00000515785 C6orf48Q9UBA6 75 aa6.43□□□□□ -1.38
LIMCH1-221ENST00000515785 PPBPP02775 128 aa6.42□□□□□ -1.38
LIMCH1-221ENST00000515785 LINC00518Q8N0U6 118 aa6.42□□□□□ -1.38
LIMCH1-221ENST00000515785 PACRGQ96M98 296 aaPredicted RBP6.42□□□□□ -1.38
LIMCH1-221ENST00000515785 PPDPFQ9H3Y8 114 aa6.42□□□□□ -1.38
LIMCH1-221ENST00000515785 ST20Q9HBF5 79 aa6.42□□□□□ -1.38
LIMCH1-221ENST00000515785 TLX1NBP0CAT3 122 aa6.41□□□□□ -1.38
LIMCH1-221ENST00000515785 S100A2P29034 98 aa6.41□□□□□ -1.38
LIMCH1-221ENST00000515785 POLR2KP53803 58 aaKnown RBP6.41□□□□□ -1.38
LIMCH1-221ENST00000515785 KRTAP13-2Q52LG2 175 aa6.41□□□□□ -1.38
LIMCH1-221ENST00000515785 SMIM15Q7Z3B0 74 aa6.41□□□□□ -1.38
LIMCH1-221ENST00000515785 Q8N8P6 123 aa6.41□□□□□ -1.38
LIMCH1-221ENST00000515785 LINC00304Q8N9R0 145 aa6.41□□□□□ -1.38
LIMCH1-221ENST00000515785 TMEM18Q96B42 140 aa6.41□□□□□ -1.38
LIMCH1-221ENST00000515785 CHCHD1Q96BP2 118 aaKnown RBP6.41□□□□□ -1.38
LIMCH1-221ENST00000515785 TCAPO15273 167 aa6.4□□□□□ -1.38
LIMCH1-221ENST00000515785 KRTAP19-4Q3LI73 84 aa6.4□□□□□ -1.38
LIMCH1-221ENST00000515785 C9orf129Q5T035 196 aaKnown RBP6.4□□□□□ -1.38
LIMCH1-221ENST00000515785 SMIM2Q9BVW6 85 aa6.4□□□□□ -1.38
LIMCH1-221ENST00000515785 MAP1LC3AQ9H492 121 aa6.4□□□□□ -1.38
LIMCH1-221ENST00000515785 LAMTOR2Q9Y2Q5 125 aa6.4□□□□□ -1.38
LIMCH1-221ENST00000515785 TRBV6-5A0A0K0K1A5 114 aa6.39□□□□□ -1.39
LIMCH1-221ENST00000515785 HSBP1O75506 76 aa6.39□□□□□ -1.39
LIMCH1-221ENST00000515785 C3orf79P0CE67 100 aa6.39□□□□□ -1.39
LIMCH1-221ENST00000515785 SUMO2P61956 95 aaKnown RBP6.39□□□□□ -1.39
LIMCH1-221ENST00000515785 JOSD1Q15040 202 aaPredicted RBP6.39□□□□□ -1.39
LIMCH1-221ENST00000515785 LINC00337Q8N6G1 96 aa6.39□□□□□ -1.39
LIMCH1-221ENST00000515785 F8WDY8 70 aa6.38□□□□□ -1.39
LIMCH1-221ENST00000515785 RPL28P46779 137 aaKnown RBP6.38□□□□□ -1.39
LIMCH1-221ENST00000515785 Q6ZUT4 128 aa6.38□□□□□ -1.39
LIMCH1-221ENST00000515785 FA2HQ7L5A8 372 aa6.38□□□□□ -1.39
LIMCH1-221ENST00000515785 C20orf78Q9BR46 151 aa6.38□□□□□ -1.39
LIMCH1-221ENST00000515785 UBE2D4Q9Y2X8 147 aa6.38□□□□□ -1.39
LIMCH1-221ENST00000515785 FCER1GP30273 86 aa6.37□□□□□ -1.39
LIMCH1-221ENST00000515785 RPL32P62910 135 aaKnown RBP6.37□□□□□ -1.39
LIMCH1-221ENST00000515785 LINC00242Q5T6M2 205 aa6.37□□□□□ -1.39
LIMCH1-221ENST00000515785 C12orf57Q99622 126 aa6.37□□□□□ -1.39
LIMCH1-221ENST00000515785 C22orf24Q9Y442 160 aa6.37□□□□□ -1.39
LIMCH1-221ENST00000515785 ASB16-AS1Q495Z4 193 aa6.36□□□□□ -1.39
LIMCH1-221ENST00000515785 LINC00469Q8N7U9 141 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms