RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 HIGD2BQ4VC39 106 aa8.54□□□□□ -1.04
LIMCH1-220ENST00000514190 NTN5Q8WTR8 489 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-220ENST00000514190 C14orf144Q96I85 54 aa8.54□□□□□ -1.04
LIMCH1-220ENST00000514190 TTTY13Q9BZ97 58 aa8.54□□□□□ -1.04
LIMCH1-220ENST00000514190 NDUFA12Q9UI09 145 aa8.54□□□□□ -1.04
LIMCH1-220ENST00000514190 F8WDY8 70 aa8.53□□□□□ -1.04
LIMCH1-220ENST00000514190 NDUFA1O15239 70 aa8.53□□□□□ -1.04
LIMCH1-220ENST00000514190 DLEU1O43261 78 aa8.53□□□□□ -1.04
LIMCH1-220ENST00000514190 CXCL5P42830 114 aa8.53□□□□□ -1.04
LIMCH1-220ENST00000514190 CKS1BP61024 79 aa8.53□□□□□ -1.04
LIMCH1-220ENST00000514190 C14orf177Q52M58 125 aa8.53□□□□□ -1.04
LIMCH1-220ENST00000514190 BOD1L2Q8IYS8 172 aa8.53□□□□□ -1.04
LIMCH1-220ENST00000514190 LINC00526Q96FQ7 95 aa8.53□□□□□ -1.04
LIMCH1-220ENST00000514190 ZNF625Q96I27 306 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-220ENST00000514190 C2orf48Q96LS8 159 aa8.53□□□□□ -1.04
LIMCH1-220ENST00000514190 MYMXA0A1B0GTQ4 84 aa8.52□□□□□ -1.05
LIMCH1-220ENST00000514190 ZNF815PA8K554 130 aa8.52□□□□□ -1.05
LIMCH1-220ENST00000514190 RTL8CO15255 209 aa8.52□□□□□ -1.05
LIMCH1-220ENST00000514190 C2orf82Q6UX34 121 aa8.52□□□□□ -1.05
LIMCH1-220ENST00000514190 HERC2O95714 4834 aa8.52□□□□□ -1.05
LIMCH1-220ENST00000514190 A0A087WTM6 91 aa8.51□□□□□ -1.05
LIMCH1-220ENST00000514190 SLC25A34Q6PIV7 304 aa8.51□□□□□ -1.05
LIMCH1-220ENST00000514190 SFTA2Q6UW10 78 aa8.51□□□□□ -1.05
LIMCH1-220ENST00000514190 LINC00336Q6ZUF6 198 aa8.51□□□□□ -1.05
LIMCH1-220ENST00000514190 SLPIP03973 132 aa8.5□□□□□ -1.05
LIMCH1-220ENST00000514190 HERV-K104P63124 156 aa8.5□□□□□ -1.05
LIMCH1-220ENST00000514190 UNQ6190/PRO20217Q6UXQ8 127 aa8.5□□□□□ -1.05
LIMCH1-220ENST00000514190 CAMK2N2Q96S95 79 aa8.5□□□□□ -1.05
LIMCH1-220ENST00000514190 PRO1933Q9H354 126 aa8.5□□□□□ -1.05
LIMCH1-220ENST00000514190 KIAA1109Q2LD37 5005 aa8.49□□□□□ -1.05
LIMCH1-220ENST00000514190 SYCNQ0VAF6 134 aa8.49□□□□□ -1.05
LIMCH1-220ENST00000514190 C10orf25Q5T742 122 aa8.49□□□□□ -1.05
LIMCH1-220ENST00000514190 UQCR10Q9UDW1 63 aa8.49□□□□□ -1.05
LIMCH1-220ENST00000514190 A0A0J9YXY3 114 aa8.48□□□□□ -1.05
LIMCH1-220ENST00000514190 TNP2Q05952 138 aa8.48□□□□□ -1.05
LIMCH1-220ENST00000514190 Q6ZRU5 148 aa8.48□□□□□ -1.05
LIMCH1-220ENST00000514190 Q8N814 137 aa8.47□□□□□ -1.05
LIMCH1-220ENST00000514190 MIEN1Q9BRT3 115 aa8.47□□□□□ -1.05
LIMCH1-220ENST00000514190 TP73-AS1Q9UF72 201 aa8.47□□□□□ -1.05
LIMCH1-220ENST00000514190 TRBV30A0A0K0K1B3 111 aa8.46□□□□□ -1.06
LIMCH1-220ENST00000514190 LINC00587B1AMM8 73 aa8.46□□□□□ -1.06
LIMCH1-220ENST00000514190 TSTD3H0UI37 97 aa8.46□□□□□ -1.06
LIMCH1-220ENST00000514190 CNBPP62633 177 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-220ENST00000514190 RNF151Q2KHN1 245 aa8.46□□□□□ -1.06
LIMCH1-220ENST00000514190 SCGB1D4Q6XE38 83 aa8.46□□□□□ -1.06
LIMCH1-220ENST00000514190 C6orf48Q9UBA6 75 aa8.46□□□□□ -1.06
LIMCH1-220ENST00000514190 EREGO14944 169 aa8.45□□□□□ -1.06
LIMCH1-220ENST00000514190 TIMM17BO60830 172 aa8.45□□□□□ -1.06
LIMCH1-220ENST00000514190 CARD19Q96LW7 228 aa8.45□□□□□ -1.06
LIMCH1-220ENST00000514190 ERG28Q9UKR5 140 aa8.45□□□□□ -1.06
LIMCH1-220ENST00000514190 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-220ENST00000514190 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-220ENST00000514190 A0A1B0GVY2 172 aa8.44□□□□□ -1.06
LIMCH1-220ENST00000514190 CIRBPQ14011 172 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-220ENST00000514190 COX17Q14061 63 aa8.44□□□□□ -1.06
LIMCH1-220ENST00000514190 C9orf116Q5BN46 136 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-220ENST00000514190 MEIG1Q5JSS6 88 aa8.44□□□□□ -1.06
LIMCH1-220ENST00000514190 C2orf91Q6ZV80 131 aa8.44□□□□□ -1.06
LIMCH1-220ENST00000514190 HIGD1BQ9P298 99 aa8.44□□□□□ -1.06
LIMCH1-220ENST00000514190 SMIM13P0DJ93 91 aa8.43□□□□□ -1.06
LIMCH1-220ENST00000514190 ADAMTSL4-AS1Q5T5F5 129 aa8.43□□□□□ -1.06
LIMCH1-220ENST00000514190 LITAFQ99732 161 aa8.43□□□□□ -1.06
LIMCH1-220ENST00000514190 A0A0U1RRA0 63 aa8.42□□□□□ -1.06
LIMCH1-220ENST00000514190 PFN2P35080 140 aa8.42□□□□□ -1.06
LIMCH1-220ENST00000514190 LINC00158P58513 81 aa8.42□□□□□ -1.06
LIMCH1-220ENST00000514190 C9orf163Q8N9P6 203 aa8.41□□□□□ -1.06
LIMCH1-220ENST00000514190 TMEM238C9JI98 176 aa8.4□□□□□ -1.06
LIMCH1-220ENST00000514190 TLX1NBP0CAT3 122 aa8.4□□□□□ -1.06
LIMCH1-220ENST00000514190 HNRNPA3P51991 378 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-220ENST00000514190 SPANXB1Q9NS25 103 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-220ENST00000514190 LRP1BQ9NZR2 4599 aa8.39□□□□□ -1.07
LIMCH1-220ENST00000514190 RYR1P21817 5038 aa8.39□□□□□ -1.07
LIMCH1-220ENST00000514190 NDUFC2-KCTD14E9PQ53 114 aa8.39□□□□□ -1.07
LIMCH1-220ENST00000514190 SRSF9Q13242 221 aaKnown RBP eCLIP8.39□□□□□ -1.07
LIMCH1-220ENST00000514190 Q6ZVH6 145 aa8.39□□□□□ -1.07
LIMCH1-220ENST00000514190 MIR7-3HGQ8N6C7 128 aa8.39□□□□□ -1.07
LIMCH1-220ENST00000514190 SPANXDQ9BXN6 97 aa8.39□□□□□ -1.07
LIMCH1-220ENST00000514190 SPANXCQ9NY87 97 aa8.39□□□□□ -1.07
LIMCH1-220ENST00000514190 DDTP30046 118 aa8.38□□□□□ -1.07
LIMCH1-220ENST00000514190 DAND5Q8N907 189 aa8.38□□□□□ -1.07
LIMCH1-220ENST00000514190 PGPEP1Q9NXJ5 209 aa8.38□□□□□ -1.07
LIMCH1-220ENST00000514190 DNAH5Q8TE73 4624 aa8.38□□□□□ -1.07
LIMCH1-220ENST00000514190 IGLV5-52A0A0A0MRZ9 124 aa8.37□□□□□ -1.07
LIMCH1-220ENST00000514190 LOC107984640A0A0U1RRK4 108 aa8.37□□□□□ -1.07
LIMCH1-220ENST00000514190 PTTG1IPP53801 180 aa8.37□□□□□ -1.07
LIMCH1-220ENST00000514190 TAL2Q16559 108 aa8.37□□□□□ -1.07
LIMCH1-220ENST00000514190 Q6ZRP5 223 aa8.37□□□□□ -1.07
LIMCH1-220ENST00000514190 HIST1H4GQ99525 98 aa8.37□□□□□ -1.07
LIMCH1-220ENST00000514190 IFITM1P13164 125 aa8.36□□□□□ -1.07
LIMCH1-220ENST00000514190 FUSP35637 526 aaKnown RBP eCLIP8.36□□□□□ -1.07
LIMCH1-220ENST00000514190 KRTAP10-2P60368 255 aa8.36□□□□□ -1.07
LIMCH1-220ENST00000514190 SDIM1Q6ZPB5 146 aa8.36□□□□□ -1.07
LIMCH1-220ENST00000514190 SND1-IT1Q9HBX3 110 aa8.36□□□□□ -1.07
LIMCH1-220ENST00000514190 PKIGQ9Y2B9 76 aa8.36□□□□□ -1.07
LIMCH1-220ENST00000514190 LOC107984156A0A0G2JMH3 177 aa8.35□□□□□ -1.07
LIMCH1-220ENST00000514190 CTAG1AP78358 180 aa8.35□□□□□ -1.07
LIMCH1-220ENST00000514190 HSD52Q0P140 79 aa8.35□□□□□ -1.07
LIMCH1-220ENST00000514190 LINC01620Q4KN68 170 aa8.35□□□□□ -1.07
LIMCH1-220ENST00000514190 GAGE2EQ4V326 116 aa8.35□□□□□ -1.07
LIMCH1-220ENST00000514190 MUSTN1Q8IVN3 82 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms