RNA–Protein interactions for RNA: ENST00000512234.1

SQSTM1-214, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 1,722 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-214ENST00000512234 UNQ6190/PRO20217Q6UXQ8 127 aa9.82□□□□□ -0.84
SQSTM1-214ENST00000512234 CARD19Q96LW7 228 aa9.82□□□□□ -0.84
SQSTM1-214ENST00000512234 IGKV2-24A0A0C4DH68 120 aa9.82□□□□□ -0.84
SQSTM1-214ENST00000512234 SPINK8P0C7L1 97 aa9.81□□□□□ -0.84
SQSTM1-214ENST00000512234 HERVK_113P63121 156 aa9.81□□□□□ -0.84
SQSTM1-214ENST00000512234 CIRBP-AS1Q8TBR5 109 aa9.81□□□□□ -0.84
SQSTM1-214ENST00000512234 TINCRA0A1B0GVN0 87 aa9.8□□□□□ -0.84
SQSTM1-214ENST00000512234 LINC01549A6NIU2 74 aa9.8□□□□□ -0.84
SQSTM1-214ENST00000512234 ATP5LO75964 103 aa9.8□□□□□ -0.84
SQSTM1-214ENST00000512234 ANKRD39Q53RE8 183 aa9.8□□□□□ -0.84
SQSTM1-214ENST00000512234 ABCA13Q86UQ4 5058 aa9.8□□□□□ -0.84
SQSTM1-214ENST00000512234 IFI27L1Q96BM0 104 aa9.8□□□□□ -0.84
SQSTM1-214ENST00000512234 MIEN1Q9BRT3 115 aa9.8□□□□□ -0.84
SQSTM1-214ENST00000512234 VAMP8Q9BV40 100 aa9.8□□□□□ -0.84
SQSTM1-214ENST00000512234 A0A096LNI7 61 aa9.79□□□□□ -0.84
SQSTM1-214ENST00000512234 M0R143 59 aa9.79□□□□□ -0.84
SQSTM1-214ENST00000512234 CHAC1Q9BUX1 264 aa9.79□□□□□ -0.84
SQSTM1-214ENST00000512234 C11orf86A6NJI1 115 aa9.79□□□□□ -0.84
SQSTM1-214ENST00000512234 C9orf116Q5BN46 136 aaPredicted RBP9.79□□□□□ -0.84
SQSTM1-214ENST00000512234 DPH3Q96FX2 82 aa9.79□□□□□ -0.84
SQSTM1-214ENST00000512234 C20orf202A1L168 122 aa9.78□□□□□ -0.84
SQSTM1-214ENST00000512234 SMIM1B2RUZ4 78 aa9.78□□□□□ -0.84
SQSTM1-214ENST00000512234 C2orf48Q96LS8 159 aa9.78□□□□□ -0.84
SQSTM1-214ENST00000512234 C6orf48Q9UBA6 75 aa9.78□□□□□ -0.84
SQSTM1-214ENST00000512234 LEPROTL1O95214 131 aa9.77□□□□□ -0.85
SQSTM1-214ENST00000512234 IGLC3P0DOY3 106 aa9.77□□□□□ -0.85
SQSTM1-214ENST00000512234 ZNF22P17026 224 aaPredicted RBP9.77□□□□□ -0.85
SQSTM1-214ENST00000512234 SEC11AP67812 179 aa9.77□□□□□ -0.85
SQSTM1-214ENST00000512234 CHTOPQ9Y3Y2 248 aaKnown RBP9.77□□□□□ -0.85
SQSTM1-214ENST00000512234 IGLV5-45A0A087WSX0 123 aa9.76□□□□□ -0.85
SQSTM1-214ENST00000512234 GAGE2BQ13066 116 aa9.76□□□□□ -0.85
SQSTM1-214ENST00000512234 PMCHL2Q9BQD1 86 aa9.76□□□□□ -0.85
SQSTM1-214ENST00000512234 MRPL35Q9NZE8 188 aaKnown RBP9.76□□□□□ -0.85
SQSTM1-214ENST00000512234 MAJINQ3KP22 176 aa9.76□□□□□ -0.85
SQSTM1-214ENST00000512234 SRRM2Q9UQ35 2752 aaKnown RBP9.75□□□□□ -0.85
SQSTM1-214ENST00000512234 A0A1B0GV90 55 aa9.75□□□□□ -0.85
SQSTM1-214ENST00000512234 NDUFA1O15239 70 aa9.75□□□□□ -0.85
SQSTM1-214ENST00000512234 C6orf226Q5I0X4 101 aa9.75□□□□□ -0.85
SQSTM1-214ENST00000512234 Q8N1X5 172 aa9.75□□□□□ -0.85
SQSTM1-214ENST00000512234 SNHG12Q9BXW3 62 aa9.75□□□□□ -0.85
SQSTM1-214ENST00000512234 A0A087WYN8 130 aa9.74□□□□□ -0.85
SQSTM1-214ENST00000512234 PRSS2P07478 247 aa9.74□□□□□ -0.85
SQSTM1-214ENST00000512234 KRTDAPP60985 99 aa9.74□□□□□ -0.85
SQSTM1-214ENST00000512234 RPL18AQ02543 176 aaKnown RBP9.74□□□□□ -0.85
SQSTM1-214ENST00000512234 TMEM170BQ5T4T1 132 aa9.74□□□□□ -0.85
SQSTM1-214ENST00000512234 SPACA4Q8TDM5 124 aa9.74□□□□□ -0.85
SQSTM1-214ENST00000512234 PCLOQ9Y6V0 5065 aa9.74□□□□□ -0.85
SQSTM1-214ENST00000512234 C3orf79P0CE67 100 aa9.73□□□□□ -0.85
SQSTM1-214ENST00000512234 LINC01561Q8N1V8 128 aa9.73□□□□□ -0.85
SQSTM1-214ENST00000512234 UQCR10Q9UDW1 63 aa9.73□□□□□ -0.85
SQSTM1-214ENST00000512234 TRAV12-1A0A0B4J245 112 aa9.72□□□□□ -0.85
SQSTM1-214ENST00000512234 CKS1BP61024 79 aa9.72□□□□□ -0.85
SQSTM1-214ENST00000512234 CIRBPQ14011 172 aaKnown RBP9.72□□□□□ -0.85
SQSTM1-214ENST00000512234 ODF1Q14990 250 aa9.72□□□□□ -0.85
SQSTM1-214ENST00000512234 Q5VSD8 79 aa9.72□□□□□ -0.85
SQSTM1-214ENST00000512234 Q8IZM0 81 aa9.72□□□□□ -0.85
SQSTM1-214ENST00000512234 COX7B2Q8TF08 81 aa9.72□□□□□ -0.85
SQSTM1-214ENST00000512234 LOC107984640A0A0U1RRK4 108 aa9.71□□□□□ -0.85
SQSTM1-214ENST00000512234 GAGE2EQ4V326 116 aa9.71□□□□□ -0.85
SQSTM1-214ENST00000512234 Q6ZRP5 223 aa9.71□□□□□ -0.85
SQSTM1-214ENST00000512234 LINC00528Q8N1L1 170 aa9.71□□□□□ -0.85
SQSTM1-214ENST00000512234 STPG4Q8N801 248 aa9.71□□□□□ -0.85
SQSTM1-214ENST00000512234 GAGE2DQ9UEU5 116 aa9.71□□□□□ -0.85
SQSTM1-214ENST00000512234 PAM16Q9Y3D7 125 aa9.71□□□□□ -0.85
SQSTM1-214ENST00000512234 PTTG1IPP53801 180 aa9.7□□□□□ -0.86
SQSTM1-214ENST00000512234 F8VRH5 84 aa9.7□□□□□ -0.86
SQSTM1-214ENST00000512234 H3BRM9 83 aa9.7□□□□□ -0.86
SQSTM1-214ENST00000512234 SPATA45Q537H7 98 aa9.7□□□□□ -0.86
SQSTM1-214ENST00000512234 HSPB8Q9UJY1 196 aa9.7□□□□□ -0.86
SQSTM1-214ENST00000512234 CBY1Q9Y3M2 126 aa9.7□□□□□ -0.86
SQSTM1-214ENST00000512234 A0A1W2PNN7 141 aa9.69□□□□□ -0.86
SQSTM1-214ENST00000512234 VPS13BQ7Z7G8 4022 aa9.68□□□□□ -0.86
SQSTM1-214ENST00000512234 FAM168BA1KXE4 195 aa9.68□□□□□ -0.86
SQSTM1-214ENST00000512234 EPM2AB3EWF7 344 aa9.68□□□□□ -0.86
SQSTM1-214ENST00000512234 IGLV5-39A0A0G2JS06 123 aa9.68□□□□□ -0.86
SQSTM1-214ENST00000512234 RNF151Q2KHN1 245 aa9.68□□□□□ -0.86
SQSTM1-214ENST00000512234 ZNF625Q96I27 306 aaPredicted RBP9.68□□□□□ -0.86
SQSTM1-214ENST00000512234 TMEM223A0PJW6 202 aa9.67□□□□□ -0.86
SQSTM1-214ENST00000512234 COL5A1-AS1Q5SY13 56 aa9.66□□□□□ -0.86
SQSTM1-214ENST00000512234 PLAC8Q9NZF1 115 aa9.66□□□□□ -0.86
SQSTM1-214ENST00000512234 TRBV30A0A0K0K1B3 111 aa9.65□□□□□ -0.86
SQSTM1-214ENST00000512234 F8WDY8 70 aa9.65□□□□□ -0.86
SQSTM1-214ENST00000512234 PET117Q6UWS5 81 aa9.65□□□□□ -0.86
SQSTM1-214ENST00000512234 MAP1LC3CQ9BXW4 147 aa9.65□□□□□ -0.86
SQSTM1-214ENST00000512234 FAM229AH3BQW9 127 aa9.65□□□□□ -0.87
SQSTM1-214ENST00000512234 XAGE1AQ9HD64 81 aa9.65□□□□□ -0.87
SQSTM1-214ENST00000512234 SYS1-DBNDD2H3BUS1 97 aa9.64□□□□□ -0.87
SQSTM1-214ENST00000512234 C9orf129Q5T035 196 aaKnown RBP9.64□□□□□ -0.87
SQSTM1-214ENST00000512234 KRTAP7-1Q8IUC3 87 aa9.64□□□□□ -0.87
SQSTM1-214ENST00000512234 NDUFC2-KCTD14E9PQ53 114 aa9.63□□□□□ -0.87
SQSTM1-214ENST00000512234 TLX1NBP0CAT3 122 aa9.63□□□□□ -0.87
SQSTM1-214ENST00000512234 HNRNPA3P51991 378 aaKnown RBP9.63□□□□□ -0.87
SQSTM1-214ENST00000512234 DPM2O94777 84 aa9.62□□□□□ -0.87
SQSTM1-214ENST00000512234 FAM19A5Q7Z5A7 132 aaPredicted RBP9.62□□□□□ -0.87
SQSTM1-214ENST00000512234 PFN2P35080 140 aa9.62□□□□□ -0.87
SQSTM1-214ENST00000512234 TSPEAR-AS2P59090 65 aa9.62□□□□□ -0.87
SQSTM1-214ENST00000512234 KRTAP10-4P60372 401 aaPredicted RBP9.62□□□□□ -0.87
SQSTM1-214ENST00000512234 PHF5AQ7RTV0 110 aaKnown RBP9.62□□□□□ -0.87
SQSTM1-214ENST00000512234 A0A0U1RRA0 63 aa9.61□□□□□ -0.87
SQSTM1-214ENST00000512234 IGKCP01834 107 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms