RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 SCXQ7RTU7 201 aa7.33□□□□□ -1.24
LIMCH1-210ENST00000509454 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-210ENST00000509454 LOC107984640A0A0U1RRK4 108 aa7.32□□□□□ -1.24
LIMCH1-210ENST00000509454 F8WDY8 70 aa7.32□□□□□ -1.24
LIMCH1-210ENST00000509454 RPL18AQ02543 176 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-210ENST00000509454 GAGE2BQ13066 116 aa7.32□□□□□ -1.24
LIMCH1-210ENST00000509454 TMEM170BQ5T4T1 132 aa7.32□□□□□ -1.24
LIMCH1-210ENST00000509454 C2orf82Q6UX34 121 aa7.32□□□□□ -1.24
LIMCH1-210ENST00000509454 IGLV5-45A0A087WSX0 123 aa7.32□□□□□ -1.24
LIMCH1-210ENST00000509454 TRAV12-1A0A0B4J245 112 aa7.32□□□□□ -1.24
LIMCH1-210ENST00000509454 C11orf86A6NJI1 115 aa7.32□□□□□ -1.24
LIMCH1-210ENST00000509454 SMIM1B2RUZ4 78 aa7.32□□□□□ -1.24
LIMCH1-210ENST00000509454 KIAA0087Q14695 138 aa7.32□□□□□ -1.24
LIMCH1-210ENST00000509454 C10orf25Q5T742 122 aa7.32□□□□□ -1.24
LIMCH1-210ENST00000509454 CIRBP-AS1Q8TBR5 109 aa7.32□□□□□ -1.24
LIMCH1-210ENST00000509454 COX7B2Q8TF08 81 aa7.32□□□□□ -1.24
LIMCH1-210ENST00000509454 A0A096LNI7 61 aa7.31□□□□□ -1.24
LIMCH1-210ENST00000509454 PANO1I0J062 215 aa7.31□□□□□ -1.24
LIMCH1-210ENST00000509454 ZNF22P17026 224 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-210ENST00000509454 Q8IZM0 81 aa7.31□□□□□ -1.24
LIMCH1-210ENST00000509454 MRPL35Q9NZE8 188 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-210ENST00000509454 RYR1P21817 5038 aa7.3□□□□□ -1.24
LIMCH1-210ENST00000509454 C6orf48Q9UBA6 75 aa7.3□□□□□ -1.24
LIMCH1-210ENST00000509454 F8VRH5 84 aa7.29□□□□□ -1.24
LIMCH1-210ENST00000509454 RNF151Q2KHN1 245 aa7.29□□□□□ -1.24
LIMCH1-210ENST00000509454 Q8N1X5 172 aa7.29□□□□□ -1.24
LIMCH1-210ENST00000509454 SPACA4Q8TDM5 124 aa7.29□□□□□ -1.24
LIMCH1-210ENST00000509454 MAP1LC3CQ9BXW4 147 aa7.29□□□□□ -1.24
LIMCH1-210ENST00000509454 LINC00474Q9P2X8 69 aa7.29□□□□□ -1.24
LIMCH1-210ENST00000509454 TRBV30A0A0K0K1B3 111 aa7.28□□□□□ -1.24
LIMCH1-210ENST00000509454 EPM2AB3EWF7 344 aa7.28□□□□□ -1.24
LIMCH1-210ENST00000509454 FAM229AH3BQW9 127 aa7.28□□□□□ -1.24
LIMCH1-210ENST00000509454 CXCL5P42830 114 aa7.28□□□□□ -1.24
LIMCH1-210ENST00000509454 PTTG1IPP53801 180 aa7.28□□□□□ -1.24
LIMCH1-210ENST00000509454 GAGE2EQ4V326 116 aa7.28□□□□□ -1.24
LIMCH1-210ENST00000509454 STPG4Q8N801 248 aa7.28□□□□□ -1.24
LIMCH1-210ENST00000509454 GAGE2DQ9UEU5 116 aa7.28□□□□□ -1.24
LIMCH1-210ENST00000509454 APOBP04114 4563 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-210ENST00000509454 A0A087WYN8 130 aa7.27□□□□□ -1.25
LIMCH1-210ENST00000509454 C9orf116Q5BN46 136 aaPredicted RBP7.27□□□□□ -1.25
LIMCH1-210ENST00000509454 Q5VSD8 79 aa7.27□□□□□ -1.25
LIMCH1-210ENST00000509454 PMCHL2Q9BQD1 86 aa7.27□□□□□ -1.25
LIMCH1-210ENST00000509454 HERC2O95714 4834 aa7.27□□□□□ -1.25
LIMCH1-210ENST00000509454 ODF1Q14990 250 aa7.27□□□□□ -1.25
LIMCH1-210ENST00000509454 CIRBPQ14011 172 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-210ENST00000509454 DPM2O94777 84 aa7.25□□□□□ -1.25
LIMCH1-210ENST00000509454 PLNP26678 52 aa7.25□□□□□ -1.25
LIMCH1-210ENST00000509454 IGLV5-39A0A0G2JS06 123 aa7.24□□□□□ -1.25
LIMCH1-210ENST00000509454 TMEM223A0PJW6 202 aa7.24□□□□□ -1.25
LIMCH1-210ENST00000509454 PLA2G1BP04054 148 aaKnown RBP7.24□□□□□ -1.25
LIMCH1-210ENST00000509454 S100A6P06703 90 aa7.24□□□□□ -1.25
LIMCH1-210ENST00000509454 COA6Q5JTJ3 125 aaKnown RBP7.24□□□□□ -1.25
LIMCH1-210ENST00000509454 Q6ZRP5 223 aa7.24□□□□□ -1.25
LIMCH1-210ENST00000509454 KRTAP17-1Q9BYP8 105 aa7.24□□□□□ -1.25
LIMCH1-210ENST00000509454 HSPG2P98160 4391 aa7.24□□□□□ -1.25
LIMCH1-210ENST00000509454 NDUFC2-KCTD14E9PQ53 114 aa7.23□□□□□ -1.25
LIMCH1-210ENST00000509454 SYS1-DBNDD2H3BUS1 97 aa7.23□□□□□ -1.25
LIMCH1-210ENST00000509454 IGKCP01834 107 aa7.23□□□□□ -1.25
LIMCH1-210ENST00000509454 TLX1NBP0CAT3 122 aa7.23□□□□□ -1.25
LIMCH1-210ENST00000509454 KRTDAPP60985 99 aa7.23□□□□□ -1.25
LIMCH1-210ENST00000509454 C7orf33Q8WU49 177 aa7.23□□□□□ -1.25
LIMCH1-210ENST00000509454 PLAC8Q9NZF1 115 aa7.23□□□□□ -1.25
LIMCH1-210ENST00000509454 S100A2P29034 98 aa7.22□□□□□ -1.25
LIMCH1-210ENST00000509454 HERVK_113P61574 105 aa7.22□□□□□ -1.25
LIMCH1-210ENST00000509454 ZNF625Q96I27 306 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-210ENST00000509454 KRTAP4-5Q9BYR2 181 aa7.22□□□□□ -1.25
LIMCH1-210ENST00000509454 DNAH8Q96JB1 4490 aa7.22□□□□□ -1.25
LIMCH1-210ENST00000509454 PFN2P35080 140 aa7.22□□□□□ -1.25
LIMCH1-210ENST00000509454 RPL37AP61513 92 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-210ENST00000509454 FAM19A5Q7Z5A7 132 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-210ENST00000509454 PET117Q6UWS5 81 aa7.21□□□□□ -1.26
LIMCH1-210ENST00000509454 XAGE1AQ9HD64 81 aa7.21□□□□□ -1.26
LIMCH1-210ENST00000509454 A0A1W2PNN7 141 aa7.2□□□□□ -1.26
LIMCH1-210ENST00000509454 FAM168BA1KXE4 195 aa7.2□□□□□ -1.26
LIMCH1-210ENST00000509454 C3orf79P0CE67 100 aa7.2□□□□□ -1.26
LIMCH1-210ENST00000509454 C20orf202A1L168 122 aa7.19□□□□□ -1.26
LIMCH1-210ENST00000509454 SFTA2Q6UW10 78 aa7.19□□□□□ -1.26
LIMCH1-210ENST00000509454 PLEKHB2Q96CS7 222 aa7.19□□□□□ -1.26
LIMCH1-210ENST00000509454 ERG28Q9UKR5 140 aa7.19□□□□□ -1.26
LIMCH1-210ENST00000509454 LEPROTO15243 131 aa7.18□□□□□ -1.26
LIMCH1-210ENST00000509454 LGALS3P17931 250 aaKnown RBP7.18□□□□□ -1.26
LIMCH1-210ENST00000509454 C9orf129Q5T035 196 aaKnown RBP7.18□□□□□ -1.26
LIMCH1-210ENST00000509454 A0A0U1RRA0 63 aa7.17□□□□□ -1.26
LIMCH1-210ENST00000509454 INAFM2P0DMQ5 153 aa7.17□□□□□ -1.26
LIMCH1-210ENST00000509454 LINC00158P58513 81 aa7.17□□□□□ -1.26
LIMCH1-210ENST00000509454 MEIG1Q5JSS6 88 aa7.17□□□□□ -1.26
LIMCH1-210ENST00000509454 LINC01545Q5VT33 79 aa7.17□□□□□ -1.26
LIMCH1-210ENST00000509454 PHF5AQ7RTV0 110 aaKnown RBP7.17□□□□□ -1.26
LIMCH1-210ENST00000509454 HIST3H2BBQ8N257 126 aa7.17□□□□□ -1.26
LIMCH1-210ENST00000509454 NDUFA12Q9UI09 145 aa7.17□□□□□ -1.26
LIMCH1-210ENST00000509454 MYMXA0A1B0GTQ4 84 aa7.17□□□□□ -1.26
LIMCH1-210ENST00000509454 M0QXV9 152 aa7.17□□□□□ -1.26
LIMCH1-210ENST00000509454 SNRPEP62304 92 aaKnown RBP7.17□□□□□ -1.26
LIMCH1-210ENST00000509454 J3QQQ9 107 aa7.16□□□□□ -1.26
LIMCH1-210ENST00000509454 TSPEAR-AS2P59090 65 aa7.15□□□□□ -1.27
LIMCH1-210ENST00000509454 HERV-K104P63124 156 aa7.15□□□□□ -1.27
LIMCH1-210ENST00000509454 UBE2BP63146 152 aa7.15□□□□□ -1.27
LIMCH1-210ENST00000509454 COX17Q14061 63 aa7.15□□□□□ -1.27
LIMCH1-210ENST00000509454 HIST1H2BLQ99880 126 aa7.15□□□□□ -1.27
LIMCH1-210ENST00000509454 SMIM13P0DJ93 91 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms