RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 SCAPERQ9BY12 1400 aa-0.51□□□□□ -2.49
LSM6-205ENST00000507449 DNAH2Q9P225 4427 aa-0.51□□□□□ -2.49
LSM6-205ENST00000507449 WDR7Q9Y4E6 1490 aa-0.51□□□□□ -2.49
LSM6-205ENST00000507449 CHD8Q9HCK8 2581 aa-0.51□□□□□ -2.49
LSM6-205ENST00000507449 PCNX1Q96RV3 2341 aa-0.52□□□□□ -2.49
LSM6-205ENST00000507449 URB1O60287 2271 aaKnown RBP-0.52□□□□□ -2.49
LSM6-205ENST00000507449 TNRC18O15417 2968 aaPredicted RBP-0.52□□□□□ -2.49
LSM6-205ENST00000507449 LINC00959A0A1B0GUT2 108 aa-0.52□□□□□ -2.49
LSM6-205ENST00000507449 CORTO00230 105 aa-0.52□□□□□ -2.49
LSM6-205ENST00000507449 ATP5EP56381 51 aaPredicted RBP-0.52□□□□□ -2.49
LSM6-205ENST00000507449 UBE2D3P61077 147 aa-0.52□□□□□ -2.49
LSM6-205ENST00000507449 UBE2D2P62837 147 aa-0.52□□□□□ -2.49
LSM6-205ENST00000507449 Q0VG73 95 aa-0.52□□□□□ -2.49
LSM6-205ENST00000507449 SFTA2Q6UW10 78 aa-0.52□□□□□ -2.49
LSM6-205ENST00000507449 FAIMQ9NVQ4 179 aa-0.52□□□□□ -2.49
LSM6-205ENST00000507449 MAP1BP46821 2468 aaKnown RBP-0.52□□□□□ -2.49
LSM6-205ENST00000507449 AKAP13Q12802 2813 aa-0.52□□□□□ -2.49
LSM6-205ENST00000507449 BTAF1O14981 1849 aa-0.52□□□□□ -2.49
LSM6-205ENST00000507449 EHBP1L1Q8N3D4 1523 aa-0.53□□□□□ -2.49
LSM6-205ENST00000507449 NBPF19A0A087WUL8 3843 aa-0.53□□□□□ -2.49
LSM6-205ENST00000507449 SPRR2BP35325 72 aa-0.53□□□□□ -2.49
LSM6-205ENST00000507449 UBA52P62987 128 aaKnown RBP-0.53□□□□□ -2.49
LSM6-205ENST00000507449 MANBALQ9NQG1 85 aa-0.53□□□□□ -2.49
LSM6-205ENST00000507449 ANK3Q12955 4377 aaKnown RBP-0.53□□□□□ -2.49
LSM6-205ENST00000507449 WNK1Q9H4A3 2382 aa-0.53□□□□□ -2.49
LSM6-205ENST00000507449 GAPVD1Q14C86 1478 aa-0.54□□□□□ -2.5
LSM6-205ENST00000507449 MAGI1Q96QZ7 1491 aaPredicted RBP-0.54□□□□□ -2.5
LSM6-205ENST00000507449 F6UZH7 168 aa-0.54□□□□□ -2.5
LSM6-205ENST00000507449 GNG4P50150 75 aa-0.54□□□□□ -2.5
LSM6-205ENST00000507449 PPP3R1P63098 170 aa-0.54□□□□□ -2.5
LSM6-205ENST00000507449 WHAMMP3Q1A5X7 153 aa-0.54□□□□□ -2.5
LSM6-205ENST00000507449 LCN9Q8WX39 176 aa-0.54□□□□□ -2.5
LSM6-205ENST00000507449 LINC01600Q96MT4 127 aa-0.54□□□□□ -2.5
LSM6-205ENST00000507449 CCDC168Q8NDH2 2452 aa-0.54□□□□□ -2.5
LSM6-205ENST00000507449 SVEP1Q4LDE5 3571 aa-0.54□□□□□ -2.5
LSM6-205ENST00000507449 CSPG4Q6UVK1 2322 aa-0.55□□□□□ -2.5
LSM6-205ENST00000507449 TRBV7-4A0A0J9YYF1 115 aa-0.55□□□□□ -2.5
LSM6-205ENST00000507449 LINC00587B1AMM8 73 aa-0.55□□□□□ -2.5
LSM6-205ENST00000507449 LOC730098B7Z3J9 87 aa-0.55□□□□□ -2.5
LSM6-205ENST00000507449 C2orf88Q9BSF0 95 aa-0.55□□□□□ -2.5
LSM6-205ENST00000507449 LAMA3Q16787 3333 aa-0.55□□□□□ -2.5
LSM6-205ENST00000507449 DNAH6Q9C0G6 4158 aa-0.55□□□□□ -2.5
LSM6-205ENST00000507449 ADGRL2O95490 1459 aa-0.55□□□□□ -2.5
LSM6-205ENST00000507449 VPS13DQ5THJ4 4388 aa-0.55□□□□□ -2.5
LSM6-205ENST00000507449 LAMA1P25391 3075 aa-0.56□□□□□ -2.5
LSM6-205ENST00000507449 GOLGA4Q13439 2230 aaKnown RBP-0.56□□□□□ -2.5
LSM6-205ENST00000507449 DNAH3Q8TD57 4116 aa-0.56□□□□□ -2.5
LSM6-205ENST00000507449 FAM223BA6NKX1 122 aa-0.56□□□□□ -2.5
LSM6-205ENST00000507449 SVBPQ8N300 66 aa-0.56□□□□□ -2.5
LSM6-205ENST00000507449 CNOT1A5YKK6 2376 aaKnown RBP-0.56□□□□□ -2.5
LSM6-205ENST00000507449 TSC2P49815 1807 aa-0.57□□□□□ -2.5
LSM6-205ENST00000507449 GCN1Q92616 2671 aaKnown RBP-0.57□□□□□ -2.5
LSM6-205ENST00000507449 S100A1P23297 94 aa-0.57□□□□□ -2.5
LSM6-205ENST00000507449 ANKRD11Q6UB99 2663 aaPredicted RBP-0.57□□□□□ -2.5
LSM6-205ENST00000507449 SRCAPQ6ZRS2 3230 aa-0.57□□□□□ -2.5
LSM6-205ENST00000507449 CUBNO60494 3623 aa-0.57□□□□□ -2.5
LSM6-205ENST00000507449 ITPR2Q14571 2701 aa-0.58□□□□□ -2.5
LSM6-205ENST00000507449 PZPP20742 1482 aa-0.58□□□□□ -2.5
LSM6-205ENST00000507449 C1orf167Q5SNV9 1468 aa-0.58□□□□□ -2.5
LSM6-205ENST00000507449 APOBP04114 4563 aaKnown RBP-0.58□□□□□ -2.5
LSM6-205ENST00000507449 KLK9Q2XQG4 91 aa-0.58□□□□□ -2.5
LSM6-205ENST00000507449 FDCSPQ8NFU4 85 aa-0.58□□□□□ -2.5
LSM6-205ENST00000507449 PRO1854Q9UHT4 67 aa-0.58□□□□□ -2.5
LSM6-205ENST00000507449 PKHD1P08F94 4074 aa-0.58□□□□□ -2.5
LSM6-205ENST00000507449 DYNC1H1Q14204 4646 aaKnown RBP-0.58□□□□□ -2.5
LSM6-205ENST00000507449 PKHD1L1Q86WI1 4243 aa-0.59□□□□□ -2.5
LSM6-205ENST00000507449 NAP1L6A6NFF2 107 aa-0.59□□□□□ -2.5
LSM6-205ENST00000507449 COX6CP09669 75 aa-0.59□□□□□ -2.5
LSM6-205ENST00000507449 TRAPPC2P0DI81 140 aa-0.59□□□□□ -2.5
LSM6-205ENST00000507449 TRAPPC2BP0DI82 140 aa-0.59□□□□□ -2.5
LSM6-205ENST00000507449 KRTAP19-6Q3LI70 58 aa-0.59□□□□□ -2.5
LSM6-205ENST00000507449 LYSTQ99698 3801 aa-0.59□□□□□ -2.5
LSM6-205ENST00000507449 MTORP42345 2549 aa-0.59□□□□□ -2.5
LSM6-205ENST00000507449 ITPR1Q14643 2758 aa-0.59□□□□□ -2.5
LSM6-205ENST00000507449 SCN7AQ01118 1682 aa-0.59□□□□□ -2.5
LSM6-205ENST00000507449 DIP2CQ9Y2E4 1556 aa-0.6□□□□□ -2.51
LSM6-205ENST00000507449 SARNPP82979 210 aaKnown RBP-0.6□□□□□ -2.51
LSM6-205ENST00000507449 FXYD6Q9H0Q3 95 aa-0.6□□□□□ -2.51
LSM6-205ENST00000507449 GNG8Q9UK08 70 aa-0.6□□□□□ -2.51
LSM6-205ENST00000507449 ARHGAP5Q13017 1502 aa-0.6□□□□□ -2.51
LSM6-205ENST00000507449 PKD1L2Q7Z442 2459 aa-0.6□□□□□ -2.51
LSM6-205ENST00000507449 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.6□□□□□ -2.51
LSM6-205ENST00000507449 SACSQ9NZJ4 4579 aa-0.6□□□□□ -2.51
LSM6-205ENST00000507449 A0A0C4DFX4 3053 aa-0.61□□□□□ -2.51
LSM6-205ENST00000507449 TACC2O95359 2948 aa-0.61□□□□□ -2.51
LSM6-205ENST00000507449 NRKQ7Z2Y5 1582 aa-0.61□□□□□ -2.51
LSM6-205ENST00000507449 SPTA1P02549 2419 aa-0.61□□□□□ -2.51
LSM6-205ENST00000507449 A0A1B0GWA3 101 aa-0.61□□□□□ -2.51
LSM6-205ENST00000507449 H3BQ15 152 aa-0.61□□□□□ -2.51
LSM6-205ENST00000507449 SPINK4O60575 86 aa-0.61□□□□□ -2.51
LSM6-205ENST00000507449 SNCAP37840 140 aa-0.61□□□□□ -2.51
LSM6-205ENST00000507449 PRO1933Q9H354 126 aa-0.61□□□□□ -2.51
LSM6-205ENST00000507449 LRRK2Q5S007 2527 aa-0.61□□□□□ -2.51
LSM6-205ENST00000507449 MRC2Q9UBG0 1479 aa-0.61□□□□□ -2.51
LSM6-205ENST00000507449 ACACAQ13085 2346 aa-0.61□□□□□ -2.51
LSM6-205ENST00000507449 FAM186AA6NE01 2351 aa-0.62□□□□□ -2.51
LSM6-205ENST00000507449 KIAA0556O60303 1618 aa-0.62□□□□□ -2.51
LSM6-205ENST00000507449 DEFA5Q01523 94 aa-0.62□□□□□ -2.51
LSM6-205ENST00000507449 DEFB105AQ8NG35 78 aa-0.62□□□□□ -2.51
LSM6-205ENST00000507449 TMEM203Q969S6 136 aa-0.62□□□□□ -2.51
Retrieved 100 of 20,778 RNA–protein pairs in 125.5 ms