RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 TOMM7Q9P0U1 55 aa6.52□□□□□ -1.37
NUP54-203ENST00000504173 PLA2G2DQ9UNK4 145 aa6.52□□□□□ -1.37
NUP54-203ENST00000504173 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.51□□□□□ -1.37
NUP54-203ENST00000504173 SYS1-DBNDD2H3BUS1 97 aa6.51□□□□□ -1.37
NUP54-203ENST00000504173 PRSS2P07478 247 aa6.51□□□□□ -1.37
NUP54-203ENST00000504173 KRTDAPP60985 99 aa6.51□□□□□ -1.37
NUP54-203ENST00000504173 SNRPEP62304 92 aaKnown RBP6.51□□□□□ -1.37
NUP54-203ENST00000504173 CNBPP62633 177 aaKnown RBP6.51□□□□□ -1.37
NUP54-203ENST00000504173 C2orf48Q96LS8 159 aa6.51□□□□□ -1.37
NUP54-203ENST00000504173 KRTAP9-2Q9BYQ4 174 aa6.51□□□□□ -1.37
NUP54-203ENST00000504173 SMIM1B2RUZ4 78 aa6.5□□□□□ -1.37
NUP54-203ENST00000504173 SLPIP03973 132 aa6.5□□□□□ -1.37
NUP54-203ENST00000504173 C3orf79P0CE67 100 aa6.5□□□□□ -1.37
NUP54-203ENST00000504173 GCSHP23434 173 aa6.5□□□□□ -1.37
NUP54-203ENST00000504173 PLNP26678 52 aa6.5□□□□□ -1.37
NUP54-203ENST00000504173 PET117Q6UWS5 81 aa6.5□□□□□ -1.37
NUP54-203ENST00000504173 CARD19Q96LW7 228 aa6.5□□□□□ -1.37
NUP54-203ENST00000504173 CAMK2N2Q96S95 79 aa6.5□□□□□ -1.37
NUP54-203ENST00000504173 PMCHL2Q9BQD1 86 aa6.5□□□□□ -1.37
NUP54-203ENST00000504173 KRTAP29-1A8MX34 341 aaPredicted RBP6.49□□□□□ -1.37
NUP54-203ENST00000504173 F8WDY8 70 aa6.49□□□□□ -1.37
NUP54-203ENST00000504173 NDUFA1O15239 70 aa6.49□□□□□ -1.37
NUP54-203ENST00000504173 DPM2O94777 84 aa6.49□□□□□ -1.37
NUP54-203ENST00000504173 SYCNQ0VAF6 134 aa6.49□□□□□ -1.37
NUP54-203ENST00000504173 KIAA0087Q14695 138 aa6.49□□□□□ -1.37
NUP54-203ENST00000504173 LINC01620Q4KN68 170 aa6.49□□□□□ -1.37
NUP54-203ENST00000504173 LCE2AQ5TA79 106 aaPredicted RBP6.49□□□□□ -1.37
NUP54-203ENST00000504173 Q8IZM0 81 aa6.49□□□□□ -1.37
NUP54-203ENST00000504173 HIST1H2BLQ99880 126 aa6.49□□□□□ -1.37
NUP54-203ENST00000504173 TMA7Q9Y2S6 64 aaKnown RBP6.49□□□□□ -1.37
NUP54-203ENST00000504173 C5orf52A6NGY3 159 aa6.48□□□□□ -1.37
NUP54-203ENST00000504173 IGKCP01834 107 aa6.48□□□□□ -1.37
NUP54-203ENST00000504173 C6orf226Q5I0X4 101 aa6.48□□□□□ -1.37
NUP54-203ENST00000504173 Q6ZRU5 148 aa6.48□□□□□ -1.37
NUP54-203ENST00000504173 C9orf163Q8N9P6 203 aa6.48□□□□□ -1.37
NUP54-203ENST00000504173 COX7B2Q8TF08 81 aa6.48□□□□□ -1.37
NUP54-203ENST00000504173 TMEM223A0PJW6 202 aa6.47□□□□□ -1.37
NUP54-203ENST00000504173 C20orf202A1L168 122 aa6.47□□□□□ -1.37
NUP54-203ENST00000504173 KRTAP10-1P60331 282 aa6.47□□□□□ -1.37
NUP54-203ENST00000504173 CKS1BP61024 79 aa6.47□□□□□ -1.37
NUP54-203ENST00000504173 LINC01545Q5VT33 79 aa6.47□□□□□ -1.37
NUP54-203ENST00000504173 IGLV5-39A0A0G2JS06 123 aa6.46□□□□□ -1.38
NUP54-203ENST00000504173 CXCL5P42830 114 aa6.46□□□□□ -1.38
NUP54-203ENST00000504173 HERVK_113P61574 105 aa6.46□□□□□ -1.38
NUP54-203ENST00000504173 C10orf25Q5T742 122 aa6.46□□□□□ -1.38
NUP54-203ENST00000504173 C2orf82Q6UX34 121 aa6.46□□□□□ -1.38
NUP54-203ENST00000504173 UNQ6190/PRO20217Q6UXQ8 127 aa6.46□□□□□ -1.38
NUP54-203ENST00000504173 XGP55808 180 aa6.45□□□□□ -1.38
NUP54-203ENST00000504173 C6orf48Q9UBA6 75 aa6.45□□□□□ -1.38
NUP54-203ENST00000504173 PKIGQ9Y2B9 76 aa6.45□□□□□ -1.38
NUP54-203ENST00000504173 TRBV30A0A0K0K1B3 111 aa6.44□□□□□ -1.38
NUP54-203ENST00000504173 RNF151Q2KHN1 245 aa6.44□□□□□ -1.38
NUP54-203ENST00000504173 SDIM1Q6ZPB5 146 aa6.44□□□□□ -1.38
NUP54-203ENST00000504173 LOC107984640A0A0U1RRK4 108 aa6.43□□□□□ -1.38
NUP54-203ENST00000504173 AKR1D1P51857 326 aa6.43□□□□□ -1.38
NUP54-203ENST00000504173 PLEKHB2Q96CS7 222 aa6.43□□□□□ -1.38
NUP54-203ENST00000504173 LEPROTO15243 131 aa6.42□□□□□ -1.38
NUP54-203ENST00000504173 RPL18AQ02543 176 aaKnown RBP6.42□□□□□ -1.38
NUP54-203ENST00000504173 FAM30AQ9NZY2 134 aa6.42□□□□□ -1.38
NUP54-203ENST00000504173 DNAH8Q96JB1 4490 aa6.42□□□□□ -1.38
NUP54-203ENST00000504173 A0A096LNI7 61 aa6.41□□□□□ -1.38
NUP54-203ENST00000504173 IGKV2-24A0A0C4DH68 120 aa6.41□□□□□ -1.38
NUP54-203ENST00000504173 CHTF8P0CG12 524 aa6.41□□□□□ -1.38
NUP54-203ENST00000504173 GAGE2BQ13066 116 aa6.41□□□□□ -1.38
NUP54-203ENST00000504173 C9orf116Q5BN46 136 aaPredicted RBP6.41□□□□□ -1.38
NUP54-203ENST00000504173 SFTA2Q6UW10 78 aa6.41□□□□□ -1.38
NUP54-203ENST00000504173 ATOH7Q8N100 152 aa6.41□□□□□ -1.38
NUP54-203ENST00000504173 LRP2P98164 4655 aa6.4□□□□□ -1.38
NUP54-203ENST00000504173 E9PLD3 99 aa6.4□□□□□ -1.38
NUP54-203ENST00000504173 J3QQQ9 107 aa6.4□□□□□ -1.38
NUP54-203ENST00000504173 SCGB1D1O95968 90 aa6.4□□□□□ -1.38
NUP54-203ENST00000504173 TLX1NBP0CAT3 122 aa6.4□□□□□ -1.38
NUP54-203ENST00000504173 LGALS3P17931 250 aaKnown RBP6.4□□□□□ -1.38
NUP54-203ENST00000504173 PTTG1IPP53801 180 aa6.4□□□□□ -1.38
NUP54-203ENST00000504173 TSPEAR-AS2P59090 65 aa6.4□□□□□ -1.38
NUP54-203ENST00000504173 Q6ZSA8 131 aa6.4□□□□□ -1.38
NUP54-203ENST00000504173 STPG4Q8N801 248 aa6.4□□□□□ -1.38
NUP54-203ENST00000504173 DPH3Q96FX2 82 aa6.4□□□□□ -1.38
NUP54-203ENST00000504173 ZNF625Q96I27 306 aaPredicted RBP6.4□□□□□ -1.38
NUP54-203ENST00000504173 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.4□□□□□ -1.38
NUP54-203ENST00000504173 MYMXA0A1B0GTQ4 84 aa6.39□□□□□ -1.39
NUP54-203ENST00000504173 NDUFC2-KCTD14E9PQ53 114 aa6.39□□□□□ -1.39
NUP54-203ENST00000504173 PANO1I0J062 215 aa6.39□□□□□ -1.39
NUP54-203ENST00000504173 HAMPP81172 84 aa6.39□□□□□ -1.39
NUP54-203ENST00000504173 MAJINQ3KP22 176 aa6.39□□□□□ -1.39
NUP54-203ENST00000504173 GAGE2EQ4V326 116 aa6.39□□□□□ -1.39
NUP54-203ENST00000504173 LINC00474Q9P2X8 69 aa6.39□□□□□ -1.39
NUP54-203ENST00000504173 GAGE2DQ9UEU5 116 aa6.39□□□□□ -1.39
NUP54-203ENST00000504173 NDUFA12Q9UI09 145 aa6.39□□□□□ -1.39
NUP54-203ENST00000504173 FAM229AH3BQW9 127 aa6.38□□□□□ -1.39
NUP54-203ENST00000504173 HERV-K104P63124 156 aa6.38□□□□□ -1.39
NUP54-203ENST00000504173 LCE2CQ5TA81 110 aa6.38□□□□□ -1.39
NUP54-203ENST00000504173 Q6ZRP5 223 aa6.38□□□□□ -1.39
NUP54-203ENST00000504173 SPACA4Q8TDM5 124 aa6.38□□□□□ -1.39
NUP54-203ENST00000504173 ERG28Q9UKR5 140 aa6.38□□□□□ -1.39
NUP54-203ENST00000504173 LRP1Q07954 4544 aaKnown RBP6.38□□□□□ -1.39
NUP54-203ENST00000504173 HSBP1L1C9JCN9 74 aa6.37□□□□□ -1.39
NUP54-203ENST00000504173 PFN2P35080 140 aa6.37□□□□□ -1.39
NUP54-203ENST00000504173 NMUP48645 174 aa6.37□□□□□ -1.39
NUP54-203ENST00000504173 CIRBPQ14011 172 aaKnown RBP6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms