RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 DEFB130BP0DP73 79 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 DEFB130AP0DP74 79 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 HTN3P15516 51 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 CCL18P55774 89 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 LINC00158P58513 81 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 WT1-ASQ06250 92 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 Q0VG73 95 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 DEFB114Q30KQ6 69 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 MEIG1Q5JSS6 88 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 TMEM170BQ5T4T1 132 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 Q6AWC8 147 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 CSAG1Q6PB30 78 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 GTF2H5Q6ZYL4 71 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 Q86TA4 180 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 UBE2DNLQ8IWF7 75 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 C5orf56Q8N8D9 126 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 Q8N8P6 123 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 DEFB104AQ8WTQ1 72 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 TMEM141Q96I45 108 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 C14orf144Q96I85 54 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 C20orf78Q9BR46 151 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 C2orf88Q9BSF0 95 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 VAMP8Q9BV40 100 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 PRO1933Q9H354 126 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 NOP10Q9NPE3 64 aaKnown RBP0.44□□□□□ -2.34
VPS50-219ENST00000495039 NXT2Q9NPJ8 142 aaKnown RBP0.44□□□□□ -2.34
VPS50-219ENST00000495039 TMEM14BQ9NUH8 114 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 MRPL35Q9NZE8 188 aaKnown RBP0.44□□□□□ -2.34
VPS50-219ENST00000495039 TOMM7Q9P0U1 55 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 UQCR10Q9UDW1 63 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 LENEPQ9Y5L5 61 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 PAPPAQ13219 1627 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 RGPD8O14715 1765 aaPredicted RBP0.44□□□□□ -2.34
VPS50-219ENST00000495039 SCN11AQ9UI33 1791 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 TJP1Q07157 1748 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 DDX60LQ5H9U9 1706 aaKnown RBP0.44□□□□□ -2.34
VPS50-219ENST00000495039 PKD1L3Q7Z443 1732 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 TIAM2Q8IVF5 1701 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 TNS1Q9HBL0 1735 aaKnown RBP0.44□□□□□ -2.34
VPS50-219ENST00000495039 NWD2Q9ULI1 1742 aa0.44□□□□□ -2.34
VPS50-219ENST00000495039 NUP210Q8TEM1 1887 aaPredicted RBP0.44□□□□□ -2.34
VPS50-219ENST00000495039 SCN7AQ01118 1682 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 TOPAZ1Q8N9V7 1692 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 TNRC6CQ9HCJ0 1690 aaKnown RBP0.43□□□□□ -2.34
VPS50-219ENST00000495039 BTAF1O14981 1849 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 SIP14410 1827 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 PHIPQ8WWQ0 1821 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 LTN1O94822 1766 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 RGPD2P0DJD1 1756 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 ARFGEF2Q9Y6D5 1785 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 MYH1P12882 1939 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 AKAP11Q9UKA4 1901 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 MYH13Q9UKX3 1938 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 TRBV7-3A0A075B6L6 115 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 TRBV25-1A0A075B6N4 114 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 A0A096LPF7 62 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 TRBV6-1A0A0K0K1D8 114 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 TEX49A0A1B0GTD5 131 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 SMIM27A0A1W2PRY6 76 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 IGLC7A0M8Q6 106 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 D6R8Y8 96 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 H0YGX0 51 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 SYS1-DBNDD2H3BUS1 97 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 K7EIM0 57 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 K7EMI3 77 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 DEFB4AO15263 64 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 CCKP06307 115 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 C3orf79P0CE67 100 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 LINC00694P0DN24 101 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 CRIP1P50238 77 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 SPINK13Q1W4C9 94 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 PYY3Q5JQD4 70 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 COL5A1-AS1Q5SY13 56 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 S100A7L2Q5SY68 101 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 LINC01545Q5VT33 79 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 C5orf38Q86SI9 138 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 NDUFA11Q86Y39 141 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 MUSTN1Q8IVN3 82 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 IFI27L1Q96BM0 104 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 FAM167A-AS1Q96KT0 104 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 SMR3AQ99954 134 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 SNHG12Q9BXW3 62 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 PRO0255Q9UI72 69 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 V9GYV3 84 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 NUP188Q5SRE5 1749 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 NRAPQ86VF7 1730 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 DDX60Q8IY21 1712 aaKnown RBP0.43□□□□□ -2.34
VPS50-219ENST00000495039 DOT1LQ8TEK3 1739 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 ANKRD26Q9UPS8 1709 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 NUP210LQ5VU65 1888 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 PLCH1Q4KWH8 1693 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 KIF13AQ9H1H9 1805 aa0.43□□□□□ -2.34
VPS50-219ENST00000495039 HEATR1Q9H583 2144 aaKnown RBP0.43□□□□□ -2.34
VPS50-219ENST00000495039 ASCC3Q8N3C0 2202 aaKnown RBP0.42□□□□□ -2.34
VPS50-219ENST00000495039 UNC13CQ8NB66 2214 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 MYLKQ15746 1914 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 ANKRD36CQ5JPF3 1778 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 BCORQ6W2J9 1755 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 RGPD5Q99666 1765 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 COL24A1Q17RW2 1714 aa0.42□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms