RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 SNCGO76070 127 aa1.79□□□□□ -2.12
VPS13A-212ENST00000493341 COPS9Q8WXC6 57 aa1.79□□□□□ -2.12
VPS13A-212ENST00000493341 DPY30Q9C005 99 aa1.79□□□□□ -2.12
VPS13A-212ENST00000493341 NDUFA12Q9UI09 145 aa1.79□□□□□ -2.12
VPS13A-212ENST00000493341 CELSR1Q9NYQ6 3014 aa1.78□□□□□ -2.12
VPS13A-212ENST00000493341 HMGN4O00479 90 aa1.78□□□□□ -2.12
VPS13A-212ENST00000493341 IFNGP01579 166 aa1.78□□□□□ -2.12
VPS13A-212ENST00000493341 S100A3P33764 101 aa1.78□□□□□ -2.12
VPS13A-212ENST00000493341 FXYD4P59646 89 aa1.78□□□□□ -2.12
VPS13A-212ENST00000493341 SPTSSAQ969W0 71 aa1.78□□□□□ -2.12
VPS13A-212ENST00000493341 FAIMQ9NVQ4 179 aa1.78□□□□□ -2.12
VPS13A-212ENST00000493341 COA4Q9NYJ1 87 aa1.78□□□□□ -2.12
VPS13A-212ENST00000493341 CREBBPQ92793 2442 aa1.78□□□□□ -2.12
VPS13A-212ENST00000493341 ITPR3Q14573 2671 aa1.78□□□□□ -2.12
VPS13A-212ENST00000493341 F8P00451 2351 aa1.78□□□□□ -2.12
VPS13A-212ENST00000493341 TRBV10-1A0A0K0K1A3 114 aa1.78□□□□□ -2.13
VPS13A-212ENST00000493341 AKAIN1P0CW23 69 aa1.78□□□□□ -2.13
VPS13A-212ENST00000493341 NCMAPQ5T1S8 102 aa1.78□□□□□ -2.13
VPS13A-212ENST00000493341 SPANXN1Q5VSR9 72 aa1.78□□□□□ -2.13
VPS13A-212ENST00000493341 ODF3Q96PU9 254 aa1.78□□□□□ -2.13
VPS13A-212ENST00000493341 C22orf24Q9Y442 160 aa1.78□□□□□ -2.13
VPS13A-212ENST00000493341 ABCA4P78363 2273 aa1.77□□□□□ -2.13
VPS13A-212ENST00000493341 POLQO75417 2590 aa1.77□□□□□ -2.13
VPS13A-212ENST00000493341 F6UZH7 168 aa1.77□□□□□ -2.13
VPS13A-212ENST00000493341 CCDC179H3BU77 68 aa1.77□□□□□ -2.13
VPS13A-212ENST00000493341 LYNX1P0DP58 116 aa1.77□□□□□ -2.13
VPS13A-212ENST00000493341 FGF7P21781 194 aa1.77□□□□□ -2.13
VPS13A-212ENST00000493341 SCN3BQ9NY72 215 aa1.77□□□□□ -2.13
VPS13A-212ENST00000493341 ZNF469Q96JG9 3925 aaPredicted RBP1.77□□□□□ -2.13
VPS13A-212ENST00000493341 A0A096LNT2 108 aa1.76□□□□□ -2.13
VPS13A-212ENST00000493341 PIPP12273 146 aaPredicted RBP1.76□□□□□ -2.13
VPS13A-212ENST00000493341 GNG2P59768 71 aa1.76□□□□□ -2.13
VPS13A-212ENST00000493341 NF1P21359 2839 aa1.76□□□□□ -2.13
VPS13A-212ENST00000493341 NSD1Q96L73 2696 aaPredicted RBP1.76□□□□□ -2.13
VPS13A-212ENST00000493341 FLNAP21333 2647 aaKnown RBP1.76□□□□□ -2.13
VPS13A-212ENST00000493341 PLCE1Q9P212 2302 aa1.76□□□□□ -2.13
VPS13A-212ENST00000493341 A0A1B0GWA3 101 aa1.76□□□□□ -2.13
VPS13A-212ENST00000493341 HIGD1CA8MV81 97 aa1.76□□□□□ -2.13
VPS13A-212ENST00000493341 FXYD1O00168 92 aa1.76□□□□□ -2.13
VPS13A-212ENST00000493341 SNAPC5O75971 98 aa1.76□□□□□ -2.13
VPS13A-212ENST00000493341 CCKP06307 115 aa1.76□□□□□ -2.13
VPS13A-212ENST00000493341 S100A7L2Q5SY68 101 aa1.76□□□□□ -2.13
VPS13A-212ENST00000493341 SBSPONQ8IVN8 264 aa1.76□□□□□ -2.13
VPS13A-212ENST00000493341 PP6455Q8WZ26 134 aa1.76□□□□□ -2.13
VPS13A-212ENST00000493341 CCL19Q99731 98 aa1.76□□□□□ -2.13
VPS13A-212ENST00000493341 AGPAT4-IT1Q9H0P7 198 aa1.76□□□□□ -2.13
VPS13A-212ENST00000493341 CSMD1Q96PZ7 3565 aa1.76□□□□□ -2.13
VPS13A-212ENST00000493341 CSMD2Q7Z408 3487 aa1.76□□□□□ -2.13
VPS13A-212ENST00000493341 CCDC168Q8NDH2 2452 aa1.75□□□□□ -2.13
VPS13A-212ENST00000493341 SPG11Q96JI7 2443 aa1.75□□□□□ -2.13
VPS13A-212ENST00000493341 CADP27708 2225 aa1.75□□□□□ -2.13
VPS13A-212ENST00000493341 VPS13CQ709C8 3753 aa1.75□□□□□ -2.13
VPS13A-212ENST00000493341 LOC101927531A0A1B0GV80 90 aa1.75□□□□□ -2.13
VPS13A-212ENST00000493341 NCR3O14931 201 aa1.75□□□□□ -2.13
VPS13A-212ENST00000493341 MRPL33O75394 65 aaKnown RBP1.75□□□□□ -2.13
VPS13A-212ENST00000493341 NDUFB6O95139 128 aa1.75□□□□□ -2.13
VPS13A-212ENST00000493341 RPL7L1Q6DKI1 246 aaKnown RBP1.75□□□□□ -2.13
VPS13A-212ENST00000493341 Q6ZSA8 131 aa1.75□□□□□ -2.13
VPS13A-212ENST00000493341 RERGLQ9H628 205 aa1.75□□□□□ -2.13
VPS13A-212ENST00000493341 TEP1Q99973 2627 aaKnown RBP1.75□□□□□ -2.13
VPS13A-212ENST00000493341 C2CD3Q4AC94 2353 aa1.75□□□□□ -2.13
VPS13A-212ENST00000493341 AKAP6Q13023 2319 aa1.75□□□□□ -2.13
VPS13A-212ENST00000493341 ANK3Q12955 4377 aaKnown RBP1.75□□□□□ -2.13
VPS13A-212ENST00000493341 S100PP25815 95 aa1.74□□□□□ -2.13
VPS13A-212ENST00000493341 C10orf128Q5T292 105 aa1.74□□□□□ -2.13
VPS13A-212ENST00000493341 C10orf82Q8WW14 230 aa1.74□□□□□ -2.13
VPS13A-212ENST00000493341 C14orf144Q96I85 54 aa1.74□□□□□ -2.13
VPS13A-212ENST00000493341 NAA60Q9H7X0 242 aa1.74□□□□□ -2.13
VPS13A-212ENST00000493341 ZANQ9Y493 2812 aa1.74□□□□□ -2.13
VPS13A-212ENST00000493341 ABCA2Q9BZC7 2435 aa1.74□□□□□ -2.13
VPS13A-212ENST00000493341 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.74□□□□□ -2.13
VPS13A-212ENST00000493341 NIPBLQ6KC79 2804 aaeCLIP1.74□□□□□ -2.13
VPS13A-212ENST00000493341 A6NIN4 97 aa1.74□□□□□ -2.13
VPS13A-212ENST00000493341 EFNA4P52798 201 aa1.74□□□□□ -2.13
VPS13A-212ENST00000493341 WFDC6Q9BQY6 131 aa1.74□□□□□ -2.13
VPS13A-212ENST00000493341 MRPL35Q9NZE8 188 aaKnown RBP1.74□□□□□ -2.13
VPS13A-212ENST00000493341 ACANP16112 2415 aa1.73□□□□□ -2.13
VPS13A-212ENST00000493341 MAP1AP78559 2803 aaPredicted RBP1.73□□□□□ -2.13
VPS13A-212ENST00000493341 ROS1P08922 2347 aa1.73□□□□□ -2.13
VPS13A-212ENST00000493341 ANK2Q01484 3957 aa1.73□□□□□ -2.13
VPS13A-212ENST00000493341 CORTO00230 105 aa1.73□□□□□ -2.13
VPS13A-212ENST00000493341 KRTAP12-4P60329 112 aa1.73□□□□□ -2.13
VPS13A-212ENST00000493341 IFI27L1Q96BM0 104 aa1.73□□□□□ -2.13
VPS13A-212ENST00000493341 TMEM141Q96I45 108 aa1.73□□□□□ -2.13
VPS13A-212ENST00000493341 USF3Q68DE3 2245 aa1.73□□□□□ -2.13
VPS13A-212ENST00000493341 SETD2Q9BYW2 2564 aaPredicted RBP1.73□□□□□ -2.13
VPS13A-212ENST00000493341 ABCA1O95477 2261 aa1.73□□□□□ -2.13
VPS13A-212ENST00000493341 A0A0G2JND7 137 aa1.73□□□□□ -2.13
VPS13A-212ENST00000493341 UBE2G1P62253 170 aa1.73□□□□□ -2.13
VPS13A-212ENST00000493341 C6orf52Q5T4I8 152 aa1.73□□□□□ -2.13
VPS13A-212ENST00000493341 Q86TA4 180 aa1.73□□□□□ -2.13
VPS13A-212ENST00000493341 AMELYQ99218 206 aa1.73□□□□□ -2.13
VPS13A-212ENST00000493341 SMR3AQ99954 134 aa1.73□□□□□ -2.13
VPS13A-212ENST00000493341 CPSF4LA6NMK7 179 aaKnown RBP1.72□□□□□ -2.13
VPS13A-212ENST00000493341 SMIM6P0DI80 62 aa1.72□□□□□ -2.13
VPS13A-212ENST00000493341 MRPS10P82664 201 aaKnown RBP1.72□□□□□ -2.13
VPS13A-212ENST00000493341 Q6ZQY7 126 aa1.72□□□□□ -2.13
VPS13A-212ENST00000493341 LSM10Q969L4 123 aaKnown RBP1.72□□□□□ -2.13
VPS13A-212ENST00000493341 SERP1Q9Y6X1 66 aa1.72□□□□□ -2.13
VPS13A-212ENST00000493341 NAV3Q8IVL0 2385 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 108.1 ms