RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 COX17Q14061 63 aa6.42□□□□□ -1.38
USP54-214ENST00000492357 KIAA0087Q14695 138 aa6.42□□□□□ -1.38
USP54-214ENST00000492357 TAL2Q16559 108 aa6.42□□□□□ -1.38
USP54-214ENST00000492357 COPS9Q8WXC6 57 aa6.42□□□□□ -1.38
USP54-214ENST00000492357 KRTAP1-5Q9BYS1 174 aa6.42□□□□□ -1.38
USP54-214ENST00000492357 Q9HAA7 133 aa6.42□□□□□ -1.38
USP54-214ENST00000492357 SPANXB1Q9NS25 103 aaPredicted RBP6.42□□□□□ -1.38
USP54-214ENST00000492357 PKIGQ9Y2B9 76 aa6.42□□□□□ -1.38
USP54-214ENST00000492357 TENM2Q9NT68 2774 aa6.42□□□□□ -1.38
USP54-214ENST00000492357 TRBV30A0A0K0K1B3 111 aa6.41□□□□□ -1.38
USP54-214ENST00000492357 TMEM238C9JI98 176 aa6.41□□□□□ -1.38
USP54-214ENST00000492357 ZNF561-AS1K7EIQ3 104 aa6.41□□□□□ -1.38
USP54-214ENST00000492357 CKS1BP61024 79 aa6.41□□□□□ -1.38
USP54-214ENST00000492357 SPAG11BQ08648 103 aa6.41□□□□□ -1.38
USP54-214ENST00000492357 RNF151Q2KHN1 245 aa6.41□□□□□ -1.38
USP54-214ENST00000492357 PCP2Q8IVA1 136 aa6.41□□□□□ -1.38
USP54-214ENST00000492357 C14orf144Q96I85 54 aa6.41□□□□□ -1.38
USP54-214ENST00000492357 PSCAO43653 123 aa6.4□□□□□ -1.38
USP54-214ENST00000492357 HNRNPA3P51991 378 aaKnown RBP6.4□□□□□ -1.38
USP54-214ENST00000492357 PTTG1IPP53801 180 aa6.4□□□□□ -1.38
USP54-214ENST00000492357 TSPEAR-AS2P59090 65 aa6.4□□□□□ -1.38
USP54-214ENST00000492357 SCGB1D4Q6XE38 83 aa6.4□□□□□ -1.38
USP54-214ENST00000492357 C6orf223Q8N319 242 aa6.4□□□□□ -1.38
USP54-214ENST00000492357 C15orf56Q8N910 161 aa6.4□□□□□ -1.38
USP54-214ENST00000492357 NTN5Q8WTR8 489 aaPredicted RBP6.4□□□□□ -1.38
USP54-214ENST00000492357 LY6G6CO95867 125 aa6.39□□□□□ -1.39
USP54-214ENST00000492357 Q6ZRN7 208 aaPredicted RBP6.39□□□□□ -1.39
USP54-214ENST00000492357 TOMM7Q9P0U1 55 aa6.39□□□□□ -1.39
USP54-214ENST00000492357 TP73-AS1Q9UF72 201 aa6.39□□□□□ -1.39
USP54-214ENST00000492357 STARD9Q9P2P6 4700 aa6.39□□□□□ -1.39
USP54-214ENST00000492357 USP17L23D6RBM5 183 aa6.38□□□□□ -1.39
USP54-214ENST00000492357 IFITM1P13164 125 aa6.38□□□□□ -1.39
USP54-214ENST00000492357 C1orf134Q5TEV5 83 aa6.38□□□□□ -1.39
USP54-214ENST00000492357 C2orf91Q6ZV80 131 aa6.38□□□□□ -1.39
USP54-214ENST00000492357 MAPKAPK5-AS1Q8N8E1 139 aa6.38□□□□□ -1.39
USP54-214ENST00000492357 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.37□□□□□ -1.39
USP54-214ENST00000492357 LCE6AA0A183 80 aa6.37□□□□□ -1.39
USP54-214ENST00000492357 M0R143 59 aa6.37□□□□□ -1.39
USP54-214ENST00000492357 CNBPP62633 177 aaKnown RBP6.37□□□□□ -1.39
USP54-214ENST00000492357 HSD52Q0P140 79 aa6.37□□□□□ -1.39
USP54-214ENST00000492357 LBHQ53QV2 105 aaPredicted RBP6.37□□□□□ -1.39
USP54-214ENST00000492357 SPANXDQ9BXN6 97 aa6.37□□□□□ -1.39
USP54-214ENST00000492357 SPANXCQ9NY87 97 aa6.37□□□□□ -1.39
USP54-214ENST00000492357 PLECQ15149 4684 aaKnown RBP6.36□□□□□ -1.39
USP54-214ENST00000492357 SYCNQ0VAF6 134 aa6.36□□□□□ -1.39
USP54-214ENST00000492357 CAMK2N2Q96S95 79 aa6.36□□□□□ -1.39
USP54-214ENST00000492357 TTTY13Q9BZ97 58 aa6.36□□□□□ -1.39
USP54-214ENST00000492357 ERG28Q9UKR5 140 aa6.36□□□□□ -1.39
USP54-214ENST00000492357 LOC107984156A0A0G2JMH3 177 aa6.35□□□□□ -1.39
USP54-214ENST00000492357 LRCOL1A6NCL2 159 aa6.35□□□□□ -1.39
USP54-214ENST00000492357 TLX1NBP0CAT3 122 aa6.35□□□□□ -1.39
USP54-214ENST00000492357 MEIG1Q5JSS6 88 aa6.35□□□□□ -1.39
USP54-214ENST00000492357 ARL17AQ8IVW1 177 aa6.35□□□□□ -1.39
USP54-214ENST00000492357 SRSF9Q13242 221 aaKnown RBP eCLIP6.34□□□□□ -1.39
USP54-214ENST00000492357 LITAFQ99732 161 aa6.34□□□□□ -1.39
USP54-214ENST00000492357 VPS13DQ5THJ4 4388 aa6.34□□□□□ -1.4
USP54-214ENST00000492357 CTAG1AP78358 180 aa6.33□□□□□ -1.4
USP54-214ENST00000492357 RPL24P83731 157 aaKnown RBP6.33□□□□□ -1.4
USP54-214ENST00000492357 CARD19Q96LW7 228 aa6.33□□□□□ -1.4
USP54-214ENST00000492357 HIST1H4GQ99525 98 aa6.33□□□□□ -1.4
USP54-214ENST00000492357 SNHG12Q9BXW3 62 aa6.33□□□□□ -1.4
USP54-214ENST00000492357 ALMS1Q8TCU4 4167 aa6.33□□□□□ -1.4
USP54-214ENST00000492357 NDUFC2-KCTD14E9PQ53 114 aa6.32□□□□□ -1.4
USP54-214ENST00000492357 HIGD2BQ4VC39 106 aa6.32□□□□□ -1.4
USP54-214ENST00000492357 C2orf82Q6UX34 121 aa6.32□□□□□ -1.4
USP54-214ENST00000492357 UNQ6190/PRO20217Q6UXQ8 127 aa6.32□□□□□ -1.4
USP54-214ENST00000492357 C6orf48Q9UBA6 75 aa6.32□□□□□ -1.4
USP54-214ENST00000492357 A0A087WTM6 91 aa6.31□□□□□ -1.4
USP54-214ENST00000492357 M0R2N4 97 aa6.31□□□□□ -1.4
USP54-214ENST00000492357 SMIM13P0DJ93 91 aa6.31□□□□□ -1.4
USP54-214ENST00000492357 LINC00158P58513 81 aa6.31□□□□□ -1.4
USP54-214ENST00000492357 Q6ZRU5 148 aa6.31□□□□□ -1.4
USP54-214ENST00000492357 LINC00336Q6ZUF6 198 aa6.31□□□□□ -1.4
USP54-214ENST00000492357 CEND1Q8N111 149 aa6.31□□□□□ -1.4
USP54-214ENST00000492357 Q8N814 137 aa6.31□□□□□ -1.4
USP54-214ENST00000492357 DNAH6Q9C0G6 4158 aa6.3□□□□□ -1.4
USP54-214ENST00000492357 A6NDN8 102 aa6.3□□□□□ -1.4
USP54-214ENST00000492357 NDUFC2O95298 119 aa6.3□□□□□ -1.4
USP54-214ENST00000492357 MIR7-3HGQ8N6C7 128 aa6.3□□□□□ -1.4
USP54-214ENST00000492357 C9orf163Q8N9P6 203 aa6.3□□□□□ -1.4
USP54-214ENST00000492357 LINC00308Q8TCZ7 52 aa6.3□□□□□ -1.4
USP54-214ENST00000492357 LOC107984640A0A0U1RRK4 108 aa6.29□□□□□ -1.4
USP54-214ENST00000492357 ADAMTSL4-AS1Q5T5F5 129 aa6.29□□□□□ -1.4
USP54-214ENST00000492357 C10orf25Q5T742 122 aa6.29□□□□□ -1.4
USP54-214ENST00000492357 DNAH1Q9P2D7 4330 aa6.29□□□□□ -1.4
USP54-214ENST00000492357 A0A1B0GWB2 263 aa6.28□□□□□ -1.4
USP54-214ENST00000492357 PFN2P35080 140 aa6.28□□□□□ -1.4
USP54-214ENST00000492357 BVES-AS1Q5T3Y7 98 aa6.28□□□□□ -1.4
USP54-214ENST00000492357 LINC00474Q9P2X8 69 aa6.28□□□□□ -1.4
USP54-214ENST00000492357 PLA2G2DQ9UNK4 145 aa6.28□□□□□ -1.4
USP54-214ENST00000492357 A0A0B4J2C4 111 aa6.27□□□□□ -1.41
USP54-214ENST00000492357 SLPIP03973 132 aa6.27□□□□□ -1.41
USP54-214ENST00000492357 WFDC2Q14508 124 aa6.27□□□□□ -1.41
USP54-214ENST00000492357 MUSTN1Q8IVN3 82 aa6.27□□□□□ -1.41
USP54-214ENST00000492357 LINC00526Q96FQ7 95 aa6.27□□□□□ -1.41
USP54-214ENST00000492357 TRBV10-2A0A0K0K1G8 114 aa6.26□□□□□ -1.41
USP54-214ENST00000492357 RTL8CO15255 209 aa6.26□□□□□ -1.41
USP54-214ENST00000492357 COL5A1-AS1Q5SY13 56 aa6.26□□□□□ -1.41
USP54-214ENST00000492357 SND1-IT1Q9HBX3 110 aa6.26□□□□□ -1.41
USP54-214ENST00000492357 CBY1Q9Y3M2 126 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms