RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 UBE2WQ96B02 151 aa8.6□□□□□ -1.03
HMGN1-220ENST00000492280 LINC00526Q96FQ7 95 aa8.6□□□□□ -1.03
HMGN1-220ENST00000492280 DAD1P61803 113 aa8.6□□□□□ -1.03
HMGN1-220ENST00000492280 Q9HAA7 133 aa8.6□□□□□ -1.03
HMGN1-220ENST00000492280 SND1-IT1Q9HBX3 110 aa8.6□□□□□ -1.03
HMGN1-220ENST00000492280 RETNQ9HD89 108 aa8.6□□□□□ -1.03
HMGN1-220ENST00000492280 A0A087WZ39 114 aa8.59□□□□□ -1.03
HMGN1-220ENST00000492280 TRAV8-4A0A0B4J246 113 aa8.59□□□□□ -1.03
HMGN1-220ENST00000492280 ANGP03950 147 aaKnown RBP8.59□□□□□ -1.03
HMGN1-220ENST00000492280 CCL18P55774 89 aa8.59□□□□□ -1.03
HMGN1-220ENST00000492280 HERV-K104P63124 156 aa8.59□□□□□ -1.03
HMGN1-220ENST00000492280 C6orf226Q5I0X4 101 aa8.59□□□□□ -1.03
HMGN1-220ENST00000492280 A0A1B0GV72 72 aa8.58□□□□□ -1.04
HMGN1-220ENST00000492280 OXLD1Q5BKU9 147 aa8.58□□□□□ -1.04
HMGN1-220ENST00000492280 C9orf116Q5BN46 136 aaPredicted RBP8.58□□□□□ -1.04
HMGN1-220ENST00000492280 CRPP02741 224 aa8.57□□□□□ -1.04
HMGN1-220ENST00000492280 IGHV4-30-4P0DP06 118 aa8.57□□□□□ -1.04
HMGN1-220ENST00000492280 PRR3P79522 188 aaKnown RBP8.57□□□□□ -1.04
HMGN1-220ENST00000492280 COX7A2LO14548 114 aa8.57□□□□□ -1.04
HMGN1-220ENST00000492280 Q8NAQ8 132 aa8.57□□□□□ -1.04
HMGN1-220ENST00000492280 CITED1Q99966 193 aa8.57□□□□□ -1.04
HMGN1-220ENST00000492280 SHISA2Q6UWI4 295 aa8.56□□□□□ -1.04
HMGN1-220ENST00000492280 RNF183Q96D59 192 aa8.56□□□□□ -1.04
HMGN1-220ENST00000492280 TTC32Q5I0X7 151 aa8.55□□□□□ -1.04
HMGN1-220ENST00000492280 OR13C6PQ8NH95 151 aa8.55□□□□□ -1.04
HMGN1-220ENST00000492280 ATP5G1P05496 136 aa8.55□□□□□ -1.04
HMGN1-220ENST00000492280 SS18Q15532 418 aa8.55□□□□□ -1.04
HMGN1-220ENST00000492280 A0A087WYN8 130 aa8.54□□□□□ -1.04
HMGN1-220ENST00000492280 LYRM9A8MSI8 78 aa8.54□□□□□ -1.04
HMGN1-220ENST00000492280 APOC4P55056 127 aa8.54□□□□□ -1.04
HMGN1-220ENST00000492280 CHCHD10Q8WYQ3 142 aaPredicted RBP8.54□□□□□ -1.04
HMGN1-220ENST00000492280 SMIM9A6NGZ8 99 aa8.53□□□□□ -1.04
HMGN1-220ENST00000492280 SMIM11BQ8TCY0 68 aa8.53□□□□□ -1.04
HMGN1-220ENST00000492280 H3BT86 120 aa8.53□□□□□ -1.04
HMGN1-220ENST00000492280 REG3AQ06141 175 aa8.53□□□□□ -1.04
HMGN1-220ENST00000492280 C6orf223Q8N319 242 aa8.53□□□□□ -1.04
HMGN1-220ENST00000492280 MGAM2Q2M2H8 2515 aa8.52□□□□□ -1.05
HMGN1-220ENST00000492280 CYSRT1A8MQ03 144 aa8.52□□□□□ -1.05
HMGN1-220ENST00000492280 A0A1B0GUV1 79 aa8.52□□□□□ -1.05
HMGN1-220ENST00000492280 SLPIP03973 132 aa8.51□□□□□ -1.05
HMGN1-220ENST00000492280 C9orf129Q5T035 196 aaKnown RBP8.51□□□□□ -1.05
HMGN1-220ENST00000492280 IBA57-AS1B1ANH7 110 aa8.51□□□□□ -1.05
HMGN1-220ENST00000492280 M0QXV9 152 aa8.51□□□□□ -1.05
HMGN1-220ENST00000492280 CKS1BP61024 79 aa8.51□□□□□ -1.05
HMGN1-220ENST00000492280 COPS9Q8WXC6 57 aa8.51□□□□□ -1.05
HMGN1-220ENST00000492280 KLK12Q9UKR0 248 aa8.51□□□□□ -1.05
HMGN1-220ENST00000492280 MALP21145 153 aa8.5□□□□□ -1.05
HMGN1-220ENST00000492280 C22orf24Q9Y442 160 aa8.5□□□□□ -1.05
HMGN1-220ENST00000492280 TRAV13-2A0A0B4J235 113 aa8.5□□□□□ -1.05
HMGN1-220ENST00000492280 BAALC-AS2P0C853 105 aa8.5□□□□□ -1.05
HMGN1-220ENST00000492280 C10orf25Q5T742 122 aa8.5□□□□□ -1.05
HMGN1-220ENST00000492280 C15orf53Q8NAA6 179 aa8.5□□□□□ -1.05
HMGN1-220ENST00000492280 Q8NDZ9 215 aa8.5□□□□□ -1.05
HMGN1-220ENST00000492280 KRTAP10-11P60412 298 aa8.49□□□□□ -1.05
HMGN1-220ENST00000492280 KIAA0087Q14695 138 aa8.49□□□□□ -1.05
HMGN1-220ENST00000492280 SPART-AS1P0CW21 52 aa8.48□□□□□ -1.05
HMGN1-220ENST00000492280 Q8IZM0 81 aa8.48□□□□□ -1.05
HMGN1-220ENST00000492280 LECT2O14960 151 aa8.48□□□□□ -1.05
HMGN1-220ENST00000492280 SCGB1A1P11684 91 aa8.48□□□□□ -1.05
HMGN1-220ENST00000492280 SNCGO76070 127 aa8.47□□□□□ -1.05
HMGN1-220ENST00000492280 MIFP14174 115 aa8.47□□□□□ -1.05
HMGN1-220ENST00000492280 RPL28P46779 137 aaKnown RBP8.47□□□□□ -1.05
HMGN1-220ENST00000492280 CFAP161Q6P656 301 aa8.47□□□□□ -1.05
HMGN1-220ENST00000492280 CD164L2Q6UWJ8 174 aa8.47□□□□□ -1.05
HMGN1-220ENST00000492280 WFDC9Q8NEX5 89 aa8.47□□□□□ -1.05
HMGN1-220ENST00000492280 NCR3O14931 201 aa8.47□□□□□ -1.05
HMGN1-220ENST00000492280 PRB2P02812 416 aaPredicted RBP8.46□□□□□ -1.05
HMGN1-220ENST00000492280 UNQ6190/PRO20217Q6UXQ8 127 aa8.46□□□□□ -1.05
HMGN1-220ENST00000492280 LYSTQ99698 3801 aa8.46□□□□□ -1.05
HMGN1-220ENST00000492280 WFDC10BQ8IUB3 73 aa8.45□□□□□ -1.06
HMGN1-220ENST00000492280 MRPL23Q16540 153 aaKnown RBP8.45□□□□□ -1.06
HMGN1-220ENST00000492280 Q6ZTC4 211 aa8.45□□□□□ -1.06
HMGN1-220ENST00000492280 TRACP01848 142 aa8.45□□□□□ -1.06
HMGN1-220ENST00000492280 KRTAP24-1Q3LI83 254 aa8.45□□□□□ -1.06
HMGN1-220ENST00000492280 LINC01600Q96MT4 127 aa8.45□□□□□ -1.06
HMGN1-220ENST00000492280 DNAL4O96015 105 aa8.44□□□□□ -1.06
HMGN1-220ENST00000492280 SMCR5Q8TEV8 140 aa8.44□□□□□ -1.06
HMGN1-220ENST00000492280 SPAG11BQ08648 103 aa8.44□□□□□ -1.06
HMGN1-220ENST00000492280 NANOS2P60321 138 aaKnown RBP8.43□□□□□ -1.06
HMGN1-220ENST00000492280 ENHOQ6UWT2 76 aa8.43□□□□□ -1.06
HMGN1-220ENST00000492280 C3orf56Q8N813 242 aa8.43□□□□□ -1.06
HMGN1-220ENST00000492280 C14orf132Q9NPU4 83 aa8.43□□□□□ -1.06
HMGN1-220ENST00000492280 STAB2Q8WWQ8 2551 aa8.42□□□□□ -1.06
HMGN1-220ENST00000492280 GAGE2BQ13066 116 aa8.42□□□□□ -1.06
HMGN1-220ENST00000492280 GAGE2EQ4V326 116 aa8.42□□□□□ -1.06
HMGN1-220ENST00000492280 HIGD2BQ4VC39 106 aa8.42□□□□□ -1.06
HMGN1-220ENST00000492280 LELP1Q5T871 98 aa8.42□□□□□ -1.06
HMGN1-220ENST00000492280 GAGE2AQ6NT46 116 aa8.42□□□□□ -1.06
HMGN1-220ENST00000492280 GAGE2DQ9UEU5 116 aa8.42□□□□□ -1.06
HMGN1-220ENST00000492280 LYPD5Q6UWN5 251 aa8.41□□□□□ -1.06
HMGN1-220ENST00000492280 XAGE1AQ9HD64 81 aa8.41□□□□□ -1.06
HMGN1-220ENST00000492280 DNAH3Q8TD57 4116 aa8.41□□□□□ -1.06
HMGN1-220ENST00000492280 KPRPQ5T749 579 aaPredicted RBP8.41□□□□□ -1.06
HMGN1-220ENST00000492280 ANAPC13Q9BS18 74 aa8.4□□□□□ -1.06
HMGN1-220ENST00000492280 DEFB121Q5J5C9 76 aa8.4□□□□□ -1.06
HMGN1-220ENST00000492280 TENM2Q9NT68 2774 aa8.39□□□□□ -1.07
HMGN1-220ENST00000492280 CSMD3Q7Z407 3707 aa8.39□□□□□ -1.07
HMGN1-220ENST00000492280 A0A0J9YWU9 116 aa8.38□□□□□ -1.07
HMGN1-220ENST00000492280 RPL18AQ02543 176 aaKnown RBP8.38□□□□□ -1.07
HMGN1-220ENST00000492280 NHLRC4P0CG21 123 aaPredicted RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms