RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 LINC00575Q6W349 94 aa5.21□□□□□ -1.57
SYNE1-228ENST00000490135 ATP11AUNQ6ZP68 121 aa5.21□□□□□ -1.58
SYNE1-228ENST00000490135 TRAV22A0A0B4J277 110 aa5.21□□□□□ -1.58
SYNE1-228ENST00000490135 LMO4P61968 165 aa5.2□□□□□ -1.58
SYNE1-228ENST00000490135 FBXL19-AS1Q494R0 122 aa5.2□□□□□ -1.58
SYNE1-228ENST00000490135 C1orf64Q8NEQ6 169 aa5.2□□□□□ -1.58
SYNE1-228ENST00000490135 CHCHD7Q9BUK0 85 aa5.2□□□□□ -1.58
SYNE1-228ENST00000490135 COX8CQ7Z4L0 72 aa5.2□□□□□ -1.58
SYNE1-228ENST00000490135 PRM2P04554 102 aa5.19□□□□□ -1.58
SYNE1-228ENST00000490135 UNQ6190/PRO20217Q6UXQ8 127 aa5.19□□□□□ -1.58
SYNE1-228ENST00000490135 PCNX2A6NKB5 2137 aa5.19□□□□□ -1.58
SYNE1-228ENST00000490135 DEFB116Q30KQ4 102 aa5.19□□□□□ -1.58
SYNE1-228ENST00000490135 PRR9Q5T870 116 aa5.19□□□□□ -1.58
SYNE1-228ENST00000490135 SPTAN1Q13813 2472 aaKnown RBP5.19□□□□□ -1.58
SYNE1-228ENST00000490135 LINC01600Q96MT4 127 aa5.19□□□□□ -1.58
SYNE1-228ENST00000490135 ERC2-IT1O76042 136 aa5.19□□□□□ -1.58
SYNE1-228ENST00000490135 WNK2Q9Y3S1 2297 aa5.19□□□□□ -1.58
SYNE1-228ENST00000490135 SHANK1Q9Y566 2161 aa5.19□□□□□ -1.58
SYNE1-228ENST00000490135 CPAMD8Q8IZJ3 1885 aa5.18□□□□□ -1.58
SYNE1-228ENST00000490135 DSCAML1Q8TD84 2053 aa5.18□□□□□ -1.58
SYNE1-228ENST00000490135 LYPD5Q6UWN5 251 aa5.18□□□□□ -1.58
SYNE1-228ENST00000490135 C8orf87E5RJ46 101 aa5.18□□□□□ -1.58
SYNE1-228ENST00000490135 Q6ZTC4 211 aa5.18□□□□□ -1.58
SYNE1-228ENST00000490135 CYP4F30PQ9H0H9 118 aa5.18□□□□□ -1.58
SYNE1-228ENST00000490135 GVINP1Q7Z2Y8 2422 aa5.18□□□□□ -1.58
SYNE1-228ENST00000490135 Q6ZRU5 148 aa5.18□□□□□ -1.58
SYNE1-228ENST00000490135 CDC42SE2Q9NRR3 84 aa5.17□□□□□ -1.58
SYNE1-228ENST00000490135 CEP192Q8TEP8 1941 aa5.17□□□□□ -1.58
SYNE1-228ENST00000490135 LINC01006Q8NI28 216 aa5.17□□□□□ -1.58
SYNE1-228ENST00000490135 TNCP24821 2201 aa5.17□□□□□ -1.58
SYNE1-228ENST00000490135 Q1T7F1 81 aa5.17□□□□□ -1.58
SYNE1-228ENST00000490135 FAM229BQ4G0N7 80 aa5.17□□□□□ -1.58
SYNE1-228ENST00000490135 SPACA4Q8TDM5 124 aa5.17□□□□□ -1.58
SYNE1-228ENST00000490135 PKDREJQ9NTG1 2253 aa5.17□□□□□ -1.58
SYNE1-228ENST00000490135 COX6A2Q02221 97 aa5.17□□□□□ -1.58
SYNE1-228ENST00000490135 AMELXQ99217 191 aa5.17□□□□□ -1.58
SYNE1-228ENST00000490135 ACACAQ13085 2346 aa5.16□□□□□ -1.58
SYNE1-228ENST00000490135 SMIM29Q86T20 159 aa5.16□□□□□ -1.58
SYNE1-228ENST00000490135 MED12Q93074 2177 aa5.16□□□□□ -1.58
SYNE1-228ENST00000490135 C9orf116Q5BN46 136 aaPredicted RBP5.16□□□□□ -1.58
SYNE1-228ENST00000490135 C6orf48Q9UBA6 75 aa5.16□□□□□ -1.58
SYNE1-228ENST00000490135 C19orf84I3L1E1 186 aa5.16□□□□□ -1.58
SYNE1-228ENST00000490135 SSBP3-AS1Q7Z2R9 100 aa5.15□□□□□ -1.58
SYNE1-228ENST00000490135 LITAFQ99732 161 aa5.15□□□□□ -1.58
SYNE1-228ENST00000490135 TP53AIP1Q9HCN2 124 aa5.15□□□□□ -1.58
SYNE1-228ENST00000490135 MKI67P46013 3256 aaKnown RBP5.15□□□□□ -1.59
SYNE1-228ENST00000490135 C10orf99Q6UWK7 81 aa5.15□□□□□ -1.59
SYNE1-228ENST00000490135 FAM229AH3BQW9 127 aa5.14□□□□□ -1.59
SYNE1-228ENST00000490135 EIF4EBP3O60516 100 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-228ENST00000490135 SMIM1B2RUZ4 78 aa5.14□□□□□ -1.59
SYNE1-228ENST00000490135 ATRXP46100 2492 aa5.14□□□□□ -1.59
SYNE1-228ENST00000490135 COX6B2Q6YFQ2 88 aa5.14□□□□□ -1.59
SYNE1-228ENST00000490135 ZGRF1Q86YA3 2104 aa5.14□□□□□ -1.59
SYNE1-228ENST00000490135 LINC00574Q9H8X3 128 aa5.14□□□□□ -1.59
SYNE1-228ENST00000490135 MALRD1Q5VYJ5 2156 aa5.14□□□□□ -1.59
SYNE1-228ENST00000490135 ROS1P08922 2347 aa5.14□□□□□ -1.59
SYNE1-228ENST00000490135 Q6ZQT0 140 aa5.14□□□□□ -1.59
SYNE1-228ENST00000490135 CRIPTQ9P021 101 aa5.13□□□□□ -1.59
SYNE1-228ENST00000490135 AGRNO00468 2067 aa5.12□□□□□ -1.59
SYNE1-228ENST00000490135 PRR3P79522 188 aaKnown RBP5.12□□□□□ -1.59
SYNE1-228ENST00000490135 C18orf65Q6ZTR6 163 aa5.12□□□□□ -1.59
SYNE1-228ENST00000490135 C11orf72Q8NBR9 251 aa5.12□□□□□ -1.59
SYNE1-228ENST00000490135 LOC110117498A0A087WWA1 95 aa5.12□□□□□ -1.59
SYNE1-228ENST00000490135 KLLNB2CW77 178 aa5.12□□□□□ -1.59
SYNE1-228ENST00000490135 LINC00242Q5T6M2 205 aa5.12□□□□□ -1.59
SYNE1-228ENST00000490135 COL4A6Q14031 1691 aa5.12□□□□□ -1.59
SYNE1-228ENST00000490135 IGLV8-61A0A075B6I0 122 aa5.12□□□□□ -1.59
SYNE1-228ENST00000490135 J3QL48 77 aa5.12□□□□□ -1.59
SYNE1-228ENST00000490135 CNOT1A5YKK6 2376 aaKnown RBP5.11□□□□□ -1.59
SYNE1-228ENST00000490135 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.11□□□□□ -1.59
SYNE1-228ENST00000490135 WISP2O76076 250 aa5.11□□□□□ -1.59
SYNE1-228ENST00000490135 Q8NA96 180 aa5.11□□□□□ -1.59
SYNE1-228ENST00000490135 C16orf95Q9H693 158 aa5.1□□□□□ -1.59
SYNE1-228ENST00000490135 PCSK5Q92824 1860 aa5.1□□□□□ -1.59
SYNE1-228ENST00000490135 CREBBPQ92793 2442 aa5.1□□□□□ -1.59
SYNE1-228ENST00000490135 MOBPQ13875 183 aa5.1□□□□□ -1.59
SYNE1-228ENST00000490135 SPATA3Q8NHX4 192 aa5.1□□□□□ -1.59
SYNE1-228ENST00000490135 CDC42SE1Q9NRR8 79 aa5.1□□□□□ -1.59
SYNE1-228ENST00000490135 APLNQ9ULZ1 77 aa5.09□□□□□ -1.59
SYNE1-228ENST00000490135 KIF25-AS1Q9Y6Z4 181 aa5.09□□□□□ -1.59
SYNE1-228ENST00000490135 ADAMTS20P59510 1910 aa5.09□□□□□ -1.6
SYNE1-228ENST00000490135 LINC00313P59037 77 aa5.09□□□□□ -1.6
SYNE1-228ENST00000490135 C22orf24Q9Y442 160 aa5.08□□□□□ -1.6
SYNE1-228ENST00000490135 HIVEP2P31629 2446 aa5.08□□□□□ -1.6
SYNE1-228ENST00000490135 AVPP01185 164 aa5.08□□□□□ -1.6
SYNE1-228ENST00000490135 LINC00588Q9Y4M8 146 aa5.08□□□□□ -1.6
SYNE1-228ENST00000490135 PRRC2AP48634 2157 aaKnown RBP5.08□□□□□ -1.6
SYNE1-228ENST00000490135 IGLV4-60A0A075B6I1 120 aa5.08□□□□□ -1.6
SYNE1-228ENST00000490135 LINC01554Q52M75 96 aa5.08□□□□□ -1.6
SYNE1-228ENST00000490135 PCNX1Q96RV3 2341 aa5.08□□□□□ -1.6
SYNE1-228ENST00000490135 TYMSOSQ8TAI1 123 aa5.07□□□□□ -1.6
SYNE1-228ENST00000490135 HTTP42858 3142 aa5.07□□□□□ -1.6
SYNE1-228ENST00000490135 LOC101927531A0A1B0GV80 90 aa5.07□□□□□ -1.6
SYNE1-228ENST00000490135 IGLV1-40P01703 118 aa5.07□□□□□ -1.6
SYNE1-228ENST00000490135 PTPRBP23467 1997 aa5.07□□□□□ -1.6
SYNE1-228ENST00000490135 LAMA2P24043 3122 aaKnown RBP5.06□□□□□ -1.6
SYNE1-228ENST00000490135 H3BPC8 53 aa5.06□□□□□ -1.6
SYNE1-228ENST00000490135 MED13Q9UHV7 2174 aa5.06□□□□□ -1.6
SYNE1-228ENST00000490135 IGLV5-39A0A0G2JS06 123 aa5.06□□□□□ -1.6
SYNE1-228ENST00000490135 TRBV7-4A0A0J9YYF1 115 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms