RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 HIST1H2BCP62807 126 aa10.97□□□□□ -0.65
MDC1-206ENST00000489540 HIST2H2BEQ16778 126 aa10.97□□□□□ -0.65
MDC1-206ENST00000489540 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.97□□□□□ -0.65
MDC1-206ENST00000489540 UNQ6190/PRO20217Q6UXQ8 127 aa10.97□□□□□ -0.65
MDC1-206ENST00000489540 HIST1H2BHQ93079 126 aa10.97□□□□□ -0.65
MDC1-206ENST00000489540 CHCHD1Q96BP2 118 aaKnown RBP10.97□□□□□ -0.65
MDC1-206ENST00000489540 HIST1H2BNQ99877 126 aa10.97□□□□□ -0.65
MDC1-206ENST00000489540 HIST1H2BMQ99879 126 aa10.97□□□□□ -0.65
MDC1-206ENST00000489540 PDZD11Q5EBL8 140 aa10.96□□□□□ -0.65
MDC1-206ENST00000489540 LINC00469Q8N7U9 141 aa10.96□□□□□ -0.65
MDC1-206ENST00000489540 C12orf57Q99622 126 aa10.96□□□□□ -0.65
MDC1-206ENST00000489540 ATP5LO75964 103 aa10.95□□□□□ -0.66
MDC1-206ENST00000489540 S100A2P29034 98 aa10.95□□□□□ -0.66
MDC1-206ENST00000489540 NDUFA6P56556 154 aa10.95□□□□□ -0.66
MDC1-206ENST00000489540 PMCHL1Q16048 86 aa10.95□□□□□ -0.66
MDC1-206ENST00000489540 C6orf226Q5I0X4 101 aa10.95□□□□□ -0.66
MDC1-206ENST00000489540 C10orf25Q5T742 122 aa10.95□□□□□ -0.66
MDC1-206ENST00000489540 IGLV5-45A0A087WSX0 123 aa10.94□□□□□ -0.66
MDC1-206ENST00000489540 TRBV30A0A0K0K1B3 111 aa10.94□□□□□ -0.66
MDC1-206ENST00000489540 KRTAP10-4P60372 401 aaPredicted RBP10.94□□□□□ -0.66
MDC1-206ENST00000489540 RPL18AQ02543 176 aaKnown RBP10.94□□□□□ -0.66
MDC1-206ENST00000489540 Q8IZM0 81 aa10.94□□□□□ -0.66
MDC1-206ENST00000489540 C7orf33Q8WU49 177 aa10.94□□□□□ -0.66
MDC1-206ENST00000489540 TOMM7Q9P0U1 55 aa10.94□□□□□ -0.66
MDC1-206ENST00000489540 C6orf48Q9UBA6 75 aa10.94□□□□□ -0.66
MDC1-206ENST00000489540 TLX1NBP0CAT3 122 aa10.93□□□□□ -0.66
MDC1-206ENST00000489540 CKS1BP61024 79 aa10.93□□□□□ -0.66
MDC1-206ENST00000489540 S100A12P80511 92 aa10.93□□□□□ -0.66
MDC1-206ENST00000489540 C2orf82Q6UX34 121 aa10.92□□□□□ -0.66
MDC1-206ENST00000489540 BAGE3Q86Y29 109 aa10.92□□□□□ -0.66
MDC1-206ENST00000489540 SRRM2Q9UQ35 2752 aaKnown RBP10.91□□□□□ -0.66
MDC1-206ENST00000489540 SMIM1B2RUZ4 78 aa10.91□□□□□ -0.66
MDC1-206ENST00000489540 H3BRM9 83 aa10.91□□□□□ -0.66
MDC1-206ENST00000489540 COA6Q5JTJ3 125 aaKnown RBP10.91□□□□□ -0.66
MDC1-206ENST00000489540 IGLC3P0DOY3 106 aa10.9□□□□□ -0.66
MDC1-206ENST00000489540 CXCL5P42830 114 aa10.9□□□□□ -0.66
MDC1-206ENST00000489540 Q6ZRP5 223 aa10.9□□□□□ -0.66
MDC1-206ENST00000489540 HSBP1O75506 76 aa10.89□□□□□ -0.67
MDC1-206ENST00000489540 HIST3H2BBQ8N257 126 aa10.89□□□□□ -0.67
MDC1-206ENST00000489540 A0A1W2PNN7 141 aa10.88□□□□□ -0.67
MDC1-206ENST00000489540 NDUFC2-KCTD14E9PQ53 114 aa10.88□□□□□ -0.67
MDC1-206ENST00000489540 C9orf116Q5BN46 136 aaPredicted RBP10.88□□□□□ -0.67
MDC1-206ENST00000489540 F8VRH5 84 aa10.87□□□□□ -0.67
MDC1-206ENST00000489540 GAGE2EQ4V326 116 aa10.87□□□□□ -0.67
MDC1-206ENST00000489540 COX7B2Q8TF08 81 aa10.87□□□□□ -0.67
MDC1-206ENST00000489540 GAGE2DQ9UEU5 116 aa10.87□□□□□ -0.67
MDC1-206ENST00000489540 SPINK8P0C7L1 97 aa10.86□□□□□ -0.67
MDC1-206ENST00000489540 IFI27L1Q96BM0 104 aa10.86□□□□□ -0.67
MDC1-206ENST00000489540 FLG2Q5D862 2391 aaPredicted RBP10.86□□□□□ -0.67
MDC1-206ENST00000489540 TRAV12-1A0A0B4J245 112 aa10.84□□□□□ -0.67
MDC1-206ENST00000489540 FAM19A2Q8N3H0 131 aa10.84□□□□□ -0.67
MDC1-206ENST00000489540 SERF1AO75920 110 aa10.84□□□□□ -0.67
MDC1-206ENST00000489540 ZNF22P17026 224 aaPredicted RBP10.84□□□□□ -0.67
MDC1-206ENST00000489540 CHTOPQ9Y3Y2 248 aaKnown RBP10.84□□□□□ -0.67
MDC1-206ENST00000489540 IGLV5-39A0A0G2JS06 123 aa10.82□□□□□ -0.68
MDC1-206ENST00000489540 C11orf86A6NJI1 115 aa10.82□□□□□ -0.68
MDC1-206ENST00000489540 FABP4P15090 132 aa10.81□□□□□ -0.68
MDC1-206ENST00000489540 PRR3P79522 188 aaKnown RBP10.81□□□□□ -0.68
MDC1-206ENST00000489540 TMEM170BQ5T4T1 132 aa10.81□□□□□ -0.68
MDC1-206ENST00000489540 HIST1H2BLQ99880 126 aa10.81□□□□□ -0.68
MDC1-206ENST00000489540 PCP4L1A6NKN8 68 aa10.8□□□□□ -0.68
MDC1-206ENST00000489540 KRTAP29-1A8MX34 341 aaPredicted RBP10.8□□□□□ -0.68
MDC1-206ENST00000489540 LEPROTL1O95214 131 aa10.8□□□□□ -0.68
MDC1-206ENST00000489540 HNRNPA3P51991 378 aaKnown RBP10.8□□□□□ -0.68
MDC1-206ENST00000489540 LINC00310P59036 64 aa10.8□□□□□ -0.68
MDC1-206ENST00000489540 MYCBP2O75592 4640 aa10.79□□□□□ -0.68
MDC1-206ENST00000489540 FAM168BA1KXE4 195 aa10.79□□□□□ -0.68
MDC1-206ENST00000489540 C9orf129Q5T035 196 aaKnown RBP10.79□□□□□ -0.68
MDC1-206ENST00000489540 PHF5AQ7RTV0 110 aaKnown RBP10.78□□□□□ -0.68
MDC1-206ENST00000489540 HSPB8Q9UJY1 196 aa10.78□□□□□ -0.68
MDC1-206ENST00000489540 J3QL48 77 aa10.77□□□□□ -0.68
MDC1-206ENST00000489540 NUPR1O60356 82 aa10.77□□□□□ -0.68
MDC1-206ENST00000489540 OXTP01178 125 aa10.77□□□□□ -0.68
MDC1-206ENST00000489540 FAM19A5Q7Z5A7 132 aaPredicted RBP10.77□□□□□ -0.68
MDC1-206ENST00000489540 PYY3Q5JQD4 70 aa10.76□□□□□ -0.69
MDC1-206ENST00000489540 JOSD1Q15040 202 aaPredicted RBP10.75□□□□□ -0.69
MDC1-206ENST00000489540 SFTA2Q6UW10 78 aa10.75□□□□□ -0.69
MDC1-206ENST00000489540 XAGE1AQ9HD64 81 aa10.75□□□□□ -0.69
MDC1-206ENST00000489540 KRTAP7-1Q8IUC3 87 aa10.75□□□□□ -0.69
MDC1-206ENST00000489540 TMEM223A0PJW6 202 aa10.74□□□□□ -0.69
MDC1-206ENST00000489540 H0Y8G0 127 aa10.74□□□□□ -0.69
MDC1-206ENST00000489540 M0QXV9 152 aa10.74□□□□□ -0.69
MDC1-206ENST00000489540 ODF1Q14990 250 aa10.74□□□□□ -0.69
MDC1-206ENST00000489540 PSORS1C2Q9UIG4 136 aa10.73□□□□□ -0.69
MDC1-206ENST00000489540 DMBT1Q9UGM3 2413 aaPredicted RBP10.73□□□□□ -0.69
MDC1-206ENST00000489540 COX17Q14061 63 aa10.71□□□□□ -0.69
MDC1-206ENST00000489540 SPINK6Q6UWN8 80 aa10.71□□□□□ -0.69
MDC1-206ENST00000489540 TSTD3H0UI37 97 aa10.7□□□□□ -0.7
MDC1-206ENST00000489540 PFN2P35080 140 aa10.7□□□□□ -0.7
MDC1-206ENST00000489540 UBE2BP63146 152 aa10.7□□□□□ -0.7
MDC1-206ENST00000489540 SRSF9Q13242 221 aaKnown RBP eCLIP10.7□□□□□ -0.7
MDC1-206ENST00000489540 LBHQ53QV2 105 aaPredicted RBP10.7□□□□□ -0.7
MDC1-206ENST00000489540 SERTAD4-AS1Q5TG53 156 aa10.7□□□□□ -0.7
MDC1-206ENST00000489540 ERG28Q9UKR5 140 aa10.7□□□□□ -0.7
MDC1-206ENST00000489540 C22orf24Q9Y442 160 aa10.7□□□□□ -0.7
MDC1-206ENST00000489540 PKHD1L1Q86WI1 4243 aa10.7□□□□□ -0.7
MDC1-206ENST00000489540 PLNP26678 52 aa10.69□□□□□ -0.7
MDC1-206ENST00000489540 C1orf137Q5JT78 98 aa10.69□□□□□ -0.7
MDC1-206ENST00000489540 ZNF625Q96I27 306 aaPredicted RBP10.69□□□□□ -0.7
MDC1-206ENST00000489540 MAP1LC3CQ9BXW4 147 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms