RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 LINC00470Q9BZP3 86 aa-1.06□□□□□ -2.58
VPS50-217ENST00000485140 CDC42SE2Q9NRR3 84 aa-1.06□□□□□ -2.58
VPS50-217ENST00000485140 DNAH3Q8TD57 4116 aa-1.06□□□□□ -2.58
VPS50-217ENST00000485140 HMGXB3Q12766 1538 aa-1.06□□□□□ -2.58
VPS50-217ENST00000485140 VPS13DQ5THJ4 4388 aa-1.07□□□□□ -2.58
VPS50-217ENST00000485140 PKHD1L1Q86WI1 4243 aa-1.08□□□□□ -2.58
VPS50-217ENST00000485140 A0A0G2JMZ2 1700 aa-1.08□□□□□ -2.58
VPS50-217ENST00000485140 FMN2Q9NZ56 1722 aa-1.08□□□□□ -2.58
VPS50-217ENST00000485140 FGF7P21781 194 aa-1.08□□□□□ -2.58
VPS50-217ENST00000485140 ZNF436-AS1Q8NC38 126 aaPredicted RBP-1.08□□□□□ -2.58
VPS50-217ENST00000485140 LAMA1P25391 3075 aa-1.08□□□□□ -2.58
VPS50-217ENST00000485140 TNRC18O15417 2968 aaPredicted RBP-1.09□□□□□ -2.58
VPS50-217ENST00000485140 A0A1B0GWA3 101 aa-1.09□□□□□ -2.58
VPS50-217ENST00000485140 GNG7O60262 68 aa-1.09□□□□□ -2.58
VPS50-217ENST00000485140 C9orf153Q5TBE3 101 aa-1.09□□□□□ -2.58
VPS50-217ENST00000485140 ARHGEF5Q12774 1597 aa-1.09□□□□□ -2.58
VPS50-217ENST00000485140 KTN1Q86UP2 1357 aaKnown RBP-1.09□□□□□ -2.58
VPS50-217ENST00000485140 TET3O43151 1660 aa-1.1□□□□□ -2.58
VPS50-217ENST00000485140 C1orf167Q5SNV9 1468 aa-1.1□□□□□ -2.59
VPS50-217ENST00000485140 UBE2L5PA0A1B0GUS4 154 aa-1.1□□□□□ -2.59
VPS50-217ENST00000485140 SEC11AP67812 179 aa-1.1□□□□□ -2.59
VPS50-217ENST00000485140 UBE2L3P68036 154 aaKnown RBP-1.1□□□□□ -2.59
VPS50-217ENST00000485140 LINC00474Q9P2X8 69 aa-1.1□□□□□ -2.59
VPS50-217ENST00000485140 SPG11Q96JI7 2443 aa-1.1□□□□□ -2.59
VPS50-217ENST00000485140 AKAP9Q99996 3911 aa-1.1□□□□□ -2.59
VPS50-217ENST00000485140 LOC105371267A0A1B0GV96 52 aa-1.11□□□□□ -2.59
VPS50-217ENST00000485140 F6UZH7 168 aa-1.11□□□□□ -2.59
VPS50-217ENST00000485140 COX6CP09669 75 aa-1.11□□□□□ -2.59
VPS50-217ENST00000485140 TRAPPC2P0DI81 140 aa-1.11□□□□□ -2.59
VPS50-217ENST00000485140 TRAPPC2BP0DI82 140 aa-1.11□□□□□ -2.59
VPS50-217ENST00000485140 GNG11P61952 73 aa-1.11□□□□□ -2.59
VPS50-217ENST00000485140 CCDC58Q4VC31 144 aa-1.11□□□□□ -2.59
VPS50-217ENST00000485140 C9orf62Q8N4C0 152 aa-1.11□□□□□ -2.59
VPS50-217ENST00000485140 CRIPTQ9P021 101 aa-1.11□□□□□ -2.59
VPS50-217ENST00000485140 EHBP1L1Q8N3D4 1523 aa-1.11□□□□□ -2.59
VPS50-217ENST00000485140 ATP5EP56381 51 aaPredicted RBP-1.12□□□□□ -2.59
VPS50-217ENST00000485140 DEFB112Q30KQ8 113 aa-1.12□□□□□ -2.59
VPS50-217ENST00000485140 MANBALQ9NQG1 85 aa-1.12□□□□□ -2.59
VPS50-217ENST00000485140 PAPPA2Q9BXP8 1791 aa-1.12□□□□□ -2.59
VPS50-217ENST00000485140 SHROOM2Q13796 1616 aa-1.12□□□□□ -2.59
VPS50-217ENST00000485140 PRRC2CQ9Y520 2896 aaKnown RBP-1.12□□□□□ -2.59
VPS50-217ENST00000485140 PKD1P98161 4303 aa-1.12□□□□□ -2.59
VPS50-217ENST00000485140 XRN1Q8IZH2 1706 aaKnown RBP-1.12□□□□□ -2.59
VPS50-217ENST00000485140 ANKRD11Q6UB99 2663 aaPredicted RBP-1.13□□□□□ -2.59
VPS50-217ENST00000485140 LOC100130705A0A1B0GUX0 176 aa-1.13□□□□□ -2.59
VPS50-217ENST00000485140 I3L3M4 83 aa-1.13□□□□□ -2.59
VPS50-217ENST00000485140 MGAM2Q2M2H8 2515 aa-1.13□□□□□ -2.59
VPS50-217ENST00000485140 DNAH2Q9P225 4427 aa-1.13□□□□□ -2.59
VPS50-217ENST00000485140 PHLPP1O60346 1717 aa-1.14□□□□□ -2.59
VPS50-217ENST00000485140 FAM24AA6NFZ4 105 aa-1.14□□□□□ -2.59
VPS50-217ENST00000485140 AKAIN1P0CW23 69 aa-1.14□□□□□ -2.59
VPS50-217ENST00000485140 H1FX-AS1Q4G0G2 97 aa-1.14□□□□□ -2.59
VPS50-217ENST00000485140 LCN9Q8WX39 176 aa-1.14□□□□□ -2.59
VPS50-217ENST00000485140 SPRR2FQ96RM1 72 aa-1.14□□□□□ -2.59
VPS50-217ENST00000485140 C12orf57Q99622 126 aa-1.14□□□□□ -2.59
VPS50-217ENST00000485140 MBD5Q9P267 1494 aa-1.14□□□□□ -2.59
VPS50-217ENST00000485140 QRICH2Q9H0J4 1663 aa-1.14□□□□□ -2.59
VPS50-217ENST00000485140 CUBNO60494 3623 aa-1.14□□□□□ -2.59
VPS50-217ENST00000485140 FOCADQ5VW36 1801 aa-1.15□□□□□ -2.59
VPS50-217ENST00000485140 OOSP1A8MZH6 123 aa-1.15□□□□□ -2.59
VPS50-217ENST00000485140 SAA2P0DJI9 122 aaPredicted RBP-1.15□□□□□ -2.59
VPS50-217ENST00000485140 LINC00846Q9NV44 126 aa-1.15□□□□□ -2.59
VPS50-217ENST00000485140 PRO1854Q9UHT4 67 aa-1.15□□□□□ -2.59
VPS50-217ENST00000485140 DNAH9Q9NYC9 4486 aa-1.15□□□□□ -2.59
VPS50-217ENST00000485140 NBASA2RRP1 2371 aa-1.15□□□□□ -2.59
VPS50-217ENST00000485140 ITPR2Q14571 2701 aa-1.16□□□□□ -2.59
VPS50-217ENST00000485140 ROBO1Q9Y6N7 1651 aa-1.16□□□□□ -2.59
VPS50-217ENST00000485140 ADGRL2O95490 1459 aa-1.16□□□□□ -2.59
VPS50-217ENST00000485140 AKAP13Q12802 2813 aa-1.16□□□□□ -2.6
VPS50-217ENST00000485140 FAM223BA6NKX1 122 aa-1.16□□□□□ -2.6
VPS50-217ENST00000485140 Q0VG73 95 aa-1.16□□□□□ -2.6
VPS50-217ENST00000485140 TSC22D3Q99576 134 aa-1.16□□□□□ -2.6
VPS50-217ENST00000485140 UNC13AQ9UPW8 1703 aa-1.16□□□□□ -2.6
VPS50-217ENST00000485140 GCN1Q92616 2671 aaKnown RBP-1.16□□□□□ -2.6
VPS50-217ENST00000485140 CCDC168Q8NDH2 2452 aa-1.16□□□□□ -2.6
VPS50-217ENST00000485140 DIP2CQ9Y2E4 1556 aa-1.17□□□□□ -2.6
VPS50-217ENST00000485140 NKTRP30414 1462 aaKnown RBP-1.17□□□□□ -2.6
VPS50-217ENST00000485140 PLEKHH2Q8IVE3 1493 aa-1.17□□□□□ -2.6
VPS50-217ENST00000485140 A0A1B0GU69 56 aa-1.17□□□□□ -2.6
VPS50-217ENST00000485140 NAP1L6A6NFF2 107 aa-1.17□□□□□ -2.6
VPS50-217ENST00000485140 UBE2D3P61077 147 aa-1.17□□□□□ -2.6
VPS50-217ENST00000485140 UBE2D2P62837 147 aa-1.17□□□□□ -2.6
VPS50-217ENST00000485140 SFTA2Q6UW10 78 aa-1.17□□□□□ -2.6
VPS50-217ENST00000485140 C1orf54Q8WWF1 131 aa-1.17□□□□□ -2.6
VPS50-217ENST00000485140 DPH3P1Q9H4G8 78 aa-1.17□□□□□ -2.6
VPS50-217ENST00000485140 NUP188Q5SRE5 1749 aa-1.18□□□□□ -2.6
VPS50-217ENST00000485140 A2ML1A8K2U0 1454 aa-1.18□□□□□ -2.6
VPS50-217ENST00000485140 KNL1Q8NG31 2342 aa-1.18□□□□□ -2.6
VPS50-217ENST00000485140 SCN7AQ01118 1682 aa-1.18□□□□□ -2.6
VPS50-217ENST00000485140 H0YGG7 62 aa-1.18□□□□□ -2.6
VPS50-217ENST00000485140 SNCAP37840 140 aa-1.18□□□□□ -2.6
VPS50-217ENST00000485140 PP6455Q8WZ26 134 aa-1.18□□□□□ -2.6
VPS50-217ENST00000485140 NLRP1Q9C000 1473 aa-1.18□□□□□ -2.6
VPS50-217ENST00000485140 NDUFA2O43678 99 aa-1.19□□□□□ -2.6
VPS50-217ENST00000485140 ITPR1Q14643 2758 aa-1.19□□□□□ -2.6
VPS50-217ENST00000485140 SCAPERQ9BY12 1400 aa-1.19□□□□□ -2.6
VPS50-217ENST00000485140 MRC2Q9UBG0 1479 aa-1.19□□□□□ -2.6
VPS50-217ENST00000485140 TRANK1O15050 2925 aa-1.19□□□□□ -2.6
VPS50-217ENST00000485140 REV3LO60673 3130 aa-1.2□□□□□ -2.6
VPS50-217ENST00000485140 CCL22O00626 93 aa-1.2□□□□□ -2.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms